Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G29900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071327: cellular response to trehalose stimulus0.00E+00
2GO:0000169: activation of MAPK activity involved in osmosensory signaling pathway0.00E+00
3GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
4GO:0045792: negative regulation of cell size0.00E+00
5GO:1900367: positive regulation of defense response to insect0.00E+00
6GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
7GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
8GO:0010200: response to chitin2.40E-13
9GO:0060548: negative regulation of cell death8.07E-08
10GO:0080142: regulation of salicylic acid biosynthetic process8.07E-08
11GO:0006468: protein phosphorylation1.24E-07
12GO:0009617: response to bacterium2.39E-07
13GO:0009816: defense response to bacterium, incompatible interaction2.98E-07
14GO:0009626: plant-type hypersensitive response3.36E-07
15GO:0048194: Golgi vesicle budding1.06E-05
16GO:0006952: defense response2.28E-05
17GO:0042742: defense response to bacterium3.37E-05
18GO:0031348: negative regulation of defense response4.31E-05
19GO:0010942: positive regulation of cell death4.79E-05
20GO:0010120: camalexin biosynthetic process1.44E-04
21GO:0043562: cellular response to nitrogen levels1.44E-04
22GO:0051245: negative regulation of cellular defense response1.58E-04
23GO:0009609: response to symbiotic bacterium1.58E-04
24GO:0080136: priming of cellular response to stress1.58E-04
25GO:0034214: protein hexamerization1.58E-04
26GO:1901183: positive regulation of camalexin biosynthetic process1.58E-04
27GO:0009270: response to humidity1.58E-04
28GO:0060862: negative regulation of floral organ abscission1.58E-04
29GO:0009751: response to salicylic acid3.31E-04
30GO:0000266: mitochondrial fission3.35E-04
31GO:0012501: programmed cell death3.35E-04
32GO:0010105: negative regulation of ethylene-activated signaling pathway3.35E-04
33GO:0080151: positive regulation of salicylic acid mediated signaling pathway3.60E-04
34GO:0010618: aerenchyma formation3.60E-04
35GO:0006212: uracil catabolic process3.60E-04
36GO:0031349: positive regulation of defense response3.60E-04
37GO:0019483: beta-alanine biosynthetic process3.60E-04
38GO:0015865: purine nucleotide transport3.60E-04
39GO:1902000: homogentisate catabolic process3.60E-04
40GO:0019725: cellular homeostasis3.60E-04
41GO:0002221: pattern recognition receptor signaling pathway3.60E-04
42GO:0046740: transport of virus in host, cell to cell3.60E-04
43GO:0015914: phospholipid transport3.60E-04
44GO:0007166: cell surface receptor signaling pathway4.45E-04
45GO:0051707: response to other organism5.17E-04
46GO:0009072: aromatic amino acid family metabolic process5.89E-04
47GO:0048281: inflorescence morphogenesis5.89E-04
48GO:0055074: calcium ion homeostasis5.89E-04
49GO:1900140: regulation of seedling development5.89E-04
50GO:0010359: regulation of anion channel activity5.89E-04
51GO:0061158: 3'-UTR-mediated mRNA destabilization5.89E-04
52GO:0045793: positive regulation of cell size5.89E-04
53GO:0010186: positive regulation of cellular defense response5.89E-04
54GO:0009814: defense response, incompatible interaction7.84E-04
55GO:0010071: root meristem specification8.43E-04
56GO:0070301: cellular response to hydrogen peroxide8.43E-04
57GO:0043207: response to external biotic stimulus8.43E-04
58GO:0046902: regulation of mitochondrial membrane permeability8.43E-04
59GO:0009399: nitrogen fixation8.43E-04
60GO:0006612: protein targeting to membrane8.43E-04
61GO:0009625: response to insect8.52E-04
62GO:0046777: protein autophosphorylation1.08E-03
63GO:0010483: pollen tube reception1.12E-03
64GO:0010363: regulation of plant-type hypersensitive response1.12E-03
65GO:0010508: positive regulation of autophagy1.12E-03
66GO:2000038: regulation of stomatal complex development1.12E-03
67GO:0010188: response to microbial phytotoxin1.12E-03
68GO:0006542: glutamine biosynthetic process1.12E-03
69GO:0061025: membrane fusion1.24E-03
70GO:0006623: protein targeting to vacuole1.32E-03
71GO:0006886: intracellular protein transport1.34E-03
72GO:0010225: response to UV-C1.41E-03
73GO:0009697: salicylic acid biosynthetic process1.41E-03
74GO:0046283: anthocyanin-containing compound metabolic process1.41E-03
75GO:0070814: hydrogen sulfide biosynthetic process1.74E-03
76GO:1902456: regulation of stomatal opening1.74E-03
77GO:0002238: response to molecule of fungal origin1.74E-03
78GO:0009759: indole glucosinolate biosynthetic process1.74E-03
79GO:2000037: regulation of stomatal complex patterning2.09E-03
80GO:0010310: regulation of hydrogen peroxide metabolic process2.09E-03
81GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.09E-03
82GO:0000911: cytokinesis by cell plate formation2.09E-03
83GO:0009612: response to mechanical stimulus2.09E-03
84GO:0050832: defense response to fungus2.27E-03
85GO:0010150: leaf senescence2.31E-03
86GO:0009610: response to symbiotic fungus2.45E-03
87GO:0043090: amino acid import2.45E-03
88GO:0070370: cellular heat acclimation2.45E-03
89GO:0010044: response to aluminum ion2.45E-03
90GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway2.45E-03
91GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.66E-03
92GO:0006470: protein dephosphorylation2.74E-03
93GO:0016559: peroxisome fission2.84E-03
94GO:0009819: drought recovery2.84E-03
95GO:0043068: positive regulation of programmed cell death2.84E-03
96GO:0006605: protein targeting2.84E-03
97GO:0010078: maintenance of root meristem identity2.84E-03
98GO:0010492: maintenance of shoot apical meristem identity2.84E-03
99GO:0006499: N-terminal protein myristoylation2.90E-03
100GO:0010119: regulation of stomatal movement3.04E-03
101GO:2000031: regulation of salicylic acid mediated signaling pathway3.25E-03
102GO:0006075: (1->3)-beta-D-glucan biosynthetic process3.25E-03
103GO:0010204: defense response signaling pathway, resistance gene-independent3.25E-03
104GO:0030968: endoplasmic reticulum unfolded protein response3.25E-03
105GO:0051865: protein autoubiquitination3.67E-03
106GO:0010112: regulation of systemic acquired resistance3.67E-03
107GO:0009737: response to abscisic acid3.71E-03
108GO:0009738: abscisic acid-activated signaling pathway3.99E-03
109GO:1900426: positive regulation of defense response to bacterium4.12E-03
110GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway4.12E-03
111GO:0008202: steroid metabolic process4.12E-03
112GO:0006970: response to osmotic stress4.42E-03
113GO:0035556: intracellular signal transduction4.56E-03
114GO:0006995: cellular response to nitrogen starvation4.58E-03
115GO:0019538: protein metabolic process4.58E-03
116GO:0000103: sulfate assimilation4.58E-03
117GO:0043069: negative regulation of programmed cell death4.58E-03
118GO:0009723: response to ethylene4.83E-03
119GO:0009682: induced systemic resistance5.05E-03
120GO:0052544: defense response by callose deposition in cell wall5.05E-03
121GO:0030148: sphingolipid biosynthetic process5.05E-03
122GO:0002213: defense response to insect5.55E-03
123GO:0006807: nitrogen compound metabolic process6.06E-03
124GO:0010229: inflorescence development6.06E-03
125GO:0009266: response to temperature stimulus6.59E-03
126GO:0034605: cellular response to heat6.59E-03
127GO:0002237: response to molecule of bacterial origin6.59E-03
128GO:0010053: root epidermal cell differentiation7.13E-03
129GO:0070588: calcium ion transmembrane transport7.13E-03
130GO:0009863: salicylic acid mediated signaling pathway8.27E-03
131GO:0018105: peptidyl-serine phosphorylation8.46E-03
132GO:0009742: brassinosteroid mediated signaling pathway8.71E-03
133GO:0048278: vesicle docking9.46E-03
134GO:2000022: regulation of jasmonic acid mediated signaling pathway1.01E-02
135GO:0007005: mitochondrion organization1.01E-02
136GO:0071456: cellular response to hypoxia1.01E-02
137GO:0010091: trichome branching1.14E-02
138GO:0042391: regulation of membrane potential1.27E-02
139GO:0080022: primary root development1.27E-02
140GO:0008360: regulation of cell shape1.34E-02
141GO:0006662: glycerol ether metabolic process1.34E-02
142GO:0010197: polar nucleus fusion1.34E-02
143GO:0048544: recognition of pollen1.41E-02
144GO:0010183: pollen tube guidance1.48E-02
145GO:0008654: phospholipid biosynthetic process1.48E-02
146GO:0000302: response to reactive oxygen species1.56E-02
147GO:0006891: intra-Golgi vesicle-mediated transport1.56E-02
148GO:0007264: small GTPase mediated signal transduction1.63E-02
149GO:0010468: regulation of gene expression1.70E-02
150GO:0030163: protein catabolic process1.71E-02
151GO:0051607: defense response to virus1.94E-02
152GO:0001666: response to hypoxia2.02E-02
153GO:0009627: systemic acquired resistance2.19E-02
154GO:0042128: nitrate assimilation2.19E-02
155GO:0006906: vesicle fusion2.19E-02
156GO:0048481: plant ovule development2.44E-02
157GO:0008219: cell death2.44E-02
158GO:0009407: toxin catabolic process2.62E-02
159GO:0006865: amino acid transport2.80E-02
160GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.83E-02
161GO:0016192: vesicle-mediated transport2.88E-02
162GO:0009853: photorespiration2.89E-02
163GO:0009867: jasmonic acid mediated signaling pathway2.89E-02
164GO:0044550: secondary metabolite biosynthetic process2.98E-02
165GO:0034599: cellular response to oxidative stress2.98E-02
166GO:0006839: mitochondrial transport3.17E-02
167GO:0006897: endocytosis3.27E-02
168GO:0006631: fatty acid metabolic process3.27E-02
169GO:0006887: exocytosis3.27E-02
170GO:0009965: leaf morphogenesis3.76E-02
171GO:0031347: regulation of defense response3.96E-02
172GO:0006486: protein glycosylation4.28E-02
173GO:0009753: response to jasmonic acid4.32E-02
174GO:0006979: response to oxidative stress4.36E-02
175GO:0010224: response to UV-B4.38E-02
176GO:0048367: shoot system development4.93E-02
RankGO TermAdjusted P value
1GO:0004168: dolichol kinase activity0.00E+00
2GO:0015370: solute:sodium symporter activity0.00E+00
3GO:0003837: beta-ureidopropionase activity0.00E+00
4GO:0070577: lysine-acetylated histone binding0.00E+00
5GO:0033550: MAP kinase tyrosine phosphatase activity0.00E+00
6GO:0016504: peptidase activator activity0.00E+00
7GO:0016034: maleylacetoacetate isomerase activity0.00E+00
8GO:0005524: ATP binding2.80E-08
9GO:0004012: phospholipid-translocating ATPase activity6.40E-07
10GO:0016301: kinase activity7.02E-07
11GO:0004713: protein tyrosine kinase activity6.06E-06
12GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.26E-05
13GO:0005516: calmodulin binding8.95E-05
14GO:0004714: transmembrane receptor protein tyrosine kinase activity1.15E-04
15GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.23E-04
16GO:0045140: inositol phosphoceramide synthase activity3.60E-04
17GO:0004190: aspartic-type endopeptidase activity4.83E-04
18GO:0004672: protein kinase activity4.84E-04
19GO:0052692: raffinose alpha-galactosidase activity5.89E-04
20GO:0004557: alpha-galactosidase activity5.89E-04
21GO:0004781: sulfate adenylyltransferase (ATP) activity5.89E-04
22GO:0016595: glutamate binding5.89E-04
23GO:0005515: protein binding6.51E-04
24GO:0033612: receptor serine/threonine kinase binding7.18E-04
25GO:0004674: protein serine/threonine kinase activity7.91E-04
26GO:0070628: proteasome binding1.12E-03
27GO:0016004: phospholipase activator activity1.12E-03
28GO:0015204: urea transmembrane transporter activity1.12E-03
29GO:0005471: ATP:ADP antiporter activity1.41E-03
30GO:0004356: glutamate-ammonia ligase activity1.41E-03
31GO:0004605: phosphatidate cytidylyltransferase activity1.74E-03
32GO:0102391: decanoate--CoA ligase activity2.09E-03
33GO:0009931: calcium-dependent protein serine/threonine kinase activity2.26E-03
34GO:0004683: calmodulin-dependent protein kinase activity2.38E-03
35GO:0004467: long-chain fatty acid-CoA ligase activity2.45E-03
36GO:0005509: calcium ion binding2.82E-03
37GO:0005544: calcium-dependent phospholipid binding2.84E-03
38GO:0008142: oxysterol binding3.25E-03
39GO:0003843: 1,3-beta-D-glucan synthase activity3.25E-03
40GO:0004712: protein serine/threonine/tyrosine kinase activity3.64E-03
41GO:0000287: magnesium ion binding3.92E-03
42GO:0004364: glutathione transferase activity4.12E-03
43GO:0005484: SNAP receptor activity4.29E-03
44GO:0015293: symporter activity4.82E-03
45GO:0004521: endoribonuclease activity5.55E-03
46GO:0061630: ubiquitin protein ligase activity5.63E-03
47GO:0016740: transferase activity5.68E-03
48GO:0005262: calcium channel activity6.06E-03
49GO:0005388: calcium-transporting ATPase activity6.06E-03
50GO:0042803: protein homodimerization activity7.04E-03
51GO:0030552: cAMP binding7.13E-03
52GO:0030553: cGMP binding7.13E-03
53GO:0004722: protein serine/threonine phosphatase activity7.46E-03
54GO:0004725: protein tyrosine phosphatase activity7.69E-03
55GO:0003954: NADH dehydrogenase activity8.27E-03
56GO:0043424: protein histidine kinase binding8.86E-03
57GO:0005216: ion channel activity8.86E-03
58GO:0004707: MAP kinase activity9.46E-03
59GO:0003727: single-stranded RNA binding1.14E-02
60GO:0047134: protein-disulfide reductase activity1.20E-02
61GO:0030551: cyclic nucleotide binding1.27E-02
62GO:0005249: voltage-gated potassium channel activity1.27E-02
63GO:0001085: RNA polymerase II transcription factor binding1.34E-02
64GO:0004791: thioredoxin-disulfide reductase activity1.41E-02
65GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.71E-02
66GO:0004842: ubiquitin-protein transferase activity1.99E-02
67GO:0004806: triglyceride lipase activity2.27E-02
68GO:0030246: carbohydrate binding2.61E-02
69GO:0004222: metalloendopeptidase activity2.62E-02
70GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.71E-02
71GO:0000149: SNARE binding3.08E-02
72GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.54E-02
73GO:0005198: structural molecule activity3.76E-02
74GO:0016298: lipase activity4.38E-02
75GO:0015171: amino acid transmembrane transporter activity4.60E-02
76GO:0031625: ubiquitin protein ligase binding4.60E-02
77GO:0045330: aspartyl esterase activity4.60E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane3.71E-15
2GO:0016021: integral component of membrane4.40E-07
3GO:0031304: intrinsic component of mitochondrial inner membrane3.60E-04
4GO:0005789: endoplasmic reticulum membrane5.29E-04
5GO:0042406: extrinsic component of endoplasmic reticulum membrane5.89E-04
6GO:0032586: protein storage vacuole membrane1.12E-03
7GO:0009504: cell plate1.32E-03
8GO:0000164: protein phosphatase type 1 complex1.41E-03
9GO:0005783: endoplasmic reticulum1.94E-03
10GO:0005887: integral component of plasma membrane2.79E-03
11GO:0030131: clathrin adaptor complex2.84E-03
12GO:0000148: 1,3-beta-D-glucan synthase complex3.25E-03
13GO:0000326: protein storage vacuole3.25E-03
14GO:0031902: late endosome membrane3.95E-03
15GO:0016604: nuclear body4.12E-03
16GO:0017119: Golgi transport complex4.58E-03
17GO:0030125: clathrin vesicle coat4.58E-03
18GO:0031012: extracellular matrix6.06E-03
19GO:0030176: integral component of endoplasmic reticulum membrane7.13E-03
20GO:0005795: Golgi stack7.13E-03
21GO:0005802: trans-Golgi network8.58E-03
22GO:0045271: respiratory chain complex I8.86E-03
23GO:0005839: proteasome core complex9.46E-03
24GO:0005741: mitochondrial outer membrane9.46E-03
25GO:0005905: clathrin-coated pit9.46E-03
26GO:0009506: plasmodesma9.81E-03
27GO:0071944: cell periphery1.71E-02
28GO:0005778: peroxisomal membrane1.86E-02
29GO:0016020: membrane2.04E-02
30GO:0005794: Golgi apparatus2.06E-02
31GO:0005788: endoplasmic reticulum lumen2.10E-02
32GO:0005773: vacuole2.17E-02
33GO:0005667: transcription factor complex2.19E-02
34GO:0000151: ubiquitin ligase complex2.44E-02
35GO:0031201: SNARE complex3.27E-02
36GO:0005622: intracellular3.68E-02
37GO:0031966: mitochondrial membrane4.07E-02
38GO:0005747: mitochondrial respiratory chain complex I4.93E-02
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Gene type



Gene DE type