GO Enrichment Analysis of Co-expressed Genes with
AT4G29390
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019307: mannose biosynthetic process | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 4 | GO:0045047: protein targeting to ER | 0.00E+00 |
| 5 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 6 | GO:0031564: transcription antitermination | 0.00E+00 |
| 7 | GO:0006412: translation | 9.59E-18 |
| 8 | GO:0042254: ribosome biogenesis | 1.94E-11 |
| 9 | GO:0007005: mitochondrion organization | 2.20E-06 |
| 10 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 1.07E-05 |
| 11 | GO:0009651: response to salt stress | 3.64E-05 |
| 12 | GO:0046686: response to cadmium ion | 3.83E-05 |
| 13 | GO:1990258: histone glutamine methylation | 4.18E-05 |
| 14 | GO:0031120: snRNA pseudouridine synthesis | 4.18E-05 |
| 15 | GO:0031118: rRNA pseudouridine synthesis | 4.18E-05 |
| 16 | GO:0000494: box C/D snoRNA 3'-end processing | 4.18E-05 |
| 17 | GO:0006626: protein targeting to mitochondrion | 5.70E-05 |
| 18 | GO:0000027: ribosomal large subunit assembly | 9.57E-05 |
| 19 | GO:0006123: mitochondrial electron transport, cytochrome c to oxygen | 1.04E-04 |
| 20 | GO:0045041: protein import into mitochondrial intermembrane space | 1.04E-04 |
| 21 | GO:1902626: assembly of large subunit precursor of preribosome | 1.78E-04 |
| 22 | GO:0045039: protein import into mitochondrial inner membrane | 1.78E-04 |
| 23 | GO:0006013: mannose metabolic process | 1.78E-04 |
| 24 | GO:0051131: chaperone-mediated protein complex assembly | 2.63E-04 |
| 25 | GO:0006986: response to unfolded protein | 2.63E-04 |
| 26 | GO:0007004: telomere maintenance via telomerase | 2.63E-04 |
| 27 | GO:0009298: GDP-mannose biosynthetic process | 2.63E-04 |
| 28 | GO:0070301: cellular response to hydrogen peroxide | 2.63E-04 |
| 29 | GO:0051085: chaperone mediated protein folding requiring cofactor | 2.63E-04 |
| 30 | GO:0006241: CTP biosynthetic process | 2.63E-04 |
| 31 | GO:0006165: nucleoside diphosphate phosphorylation | 2.63E-04 |
| 32 | GO:0006228: UTP biosynthetic process | 2.63E-04 |
| 33 | GO:0000956: nuclear-transcribed mRNA catabolic process | 3.53E-04 |
| 34 | GO:0006183: GTP biosynthetic process | 3.53E-04 |
| 35 | GO:0071493: cellular response to UV-B | 4.50E-04 |
| 36 | GO:0031167: rRNA methylation | 4.50E-04 |
| 37 | GO:0006414: translational elongation | 5.10E-04 |
| 38 | GO:0006458: 'de novo' protein folding | 6.58E-04 |
| 39 | GO:0042026: protein refolding | 6.58E-04 |
| 40 | GO:0001522: pseudouridine synthesis | 8.84E-04 |
| 41 | GO:0042255: ribosome assembly | 8.84E-04 |
| 42 | GO:0001510: RNA methylation | 1.00E-03 |
| 43 | GO:0006364: rRNA processing | 1.01E-03 |
| 44 | GO:0000387: spliceosomal snRNP assembly | 1.25E-03 |
| 45 | GO:0000398: mRNA splicing, via spliceosome | 1.63E-03 |
| 46 | GO:0048467: gynoecium development | 1.97E-03 |
| 47 | GO:0019853: L-ascorbic acid biosynthetic process | 2.13E-03 |
| 48 | GO:0006413: translational initiation | 2.26E-03 |
| 49 | GO:0006487: protein N-linked glycosylation | 2.46E-03 |
| 50 | GO:0061077: chaperone-mediated protein folding | 2.80E-03 |
| 51 | GO:0009793: embryo development ending in seed dormancy | 2.86E-03 |
| 52 | GO:0008033: tRNA processing | 3.71E-03 |
| 53 | GO:0010501: RNA secondary structure unwinding | 3.71E-03 |
| 54 | GO:0000413: protein peptidyl-prolyl isomerization | 3.71E-03 |
| 55 | GO:0010197: polar nucleus fusion | 3.91E-03 |
| 56 | GO:0015986: ATP synthesis coupled proton transport | 4.11E-03 |
| 57 | GO:0032502: developmental process | 4.72E-03 |
| 58 | GO:0009409: response to cold | 6.67E-03 |
| 59 | GO:0016049: cell growth | 6.74E-03 |
| 60 | GO:0009408: response to heat | 6.79E-03 |
| 61 | GO:0048527: lateral root development | 7.72E-03 |
| 62 | GO:0010043: response to zinc ion | 7.72E-03 |
| 63 | GO:0009631: cold acclimation | 7.72E-03 |
| 64 | GO:0006839: mitochondrial transport | 9.01E-03 |
| 65 | GO:0008283: cell proliferation | 9.82E-03 |
| 66 | GO:0009744: response to sucrose | 9.82E-03 |
| 67 | GO:0009735: response to cytokinin | 1.10E-02 |
| 68 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 1.12E-02 |
| 69 | GO:0009846: pollen germination | 1.15E-02 |
| 70 | GO:0006096: glycolytic process | 1.36E-02 |
| 71 | GO:0006457: protein folding | 1.56E-02 |
| 72 | GO:0009845: seed germination | 1.93E-02 |
| 73 | GO:0009790: embryo development | 2.03E-02 |
| 74 | GO:0006633: fatty acid biosynthetic process | 2.14E-02 |
| 75 | GO:0009414: response to water deprivation | 2.39E-02 |
| 76 | GO:0015031: protein transport | 3.11E-02 |
| 77 | GO:0006970: response to osmotic stress | 3.30E-02 |
| 78 | GO:0009723: response to ethylene | 3.47E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0001072: transcription antitermination factor activity, RNA binding | 0.00E+00 |
| 2 | GO:0102132: 3-oxo-pimeloyl-[acp] methyl ester reductase activity | 0.00E+00 |
| 3 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 4 | GO:0004615: phosphomannomutase activity | 0.00E+00 |
| 5 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 6 | GO:0004316: 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity | 0.00E+00 |
| 7 | GO:0003735: structural constituent of ribosome | 2.40E-21 |
| 8 | GO:0005507: copper ion binding | 3.42E-10 |
| 9 | GO:0003746: translation elongation factor activity | 5.88E-07 |
| 10 | GO:0003723: RNA binding | 1.06E-06 |
| 11 | GO:0003729: mRNA binding | 2.86E-06 |
| 12 | GO:0030515: snoRNA binding | 1.07E-05 |
| 13 | GO:1990259: histone-glutamine methyltransferase activity | 4.18E-05 |
| 14 | GO:0004634: phosphopyruvate hydratase activity | 1.04E-04 |
| 15 | GO:0070034: telomerase RNA binding | 1.04E-04 |
| 16 | GO:0008649: rRNA methyltransferase activity | 1.78E-04 |
| 17 | GO:0070180: large ribosomal subunit rRNA binding | 1.78E-04 |
| 18 | GO:0004550: nucleoside diphosphate kinase activity | 2.63E-04 |
| 19 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.78E-04 |
| 20 | GO:0031369: translation initiation factor binding | 5.51E-04 |
| 21 | GO:0008121: ubiquinol-cytochrome-c reductase activity | 7.69E-04 |
| 22 | GO:0051082: unfolded protein binding | 1.42E-03 |
| 23 | GO:0008026: ATP-dependent helicase activity | 1.50E-03 |
| 24 | GO:0044183: protein binding involved in protein folding | 1.53E-03 |
| 25 | GO:0015114: phosphate ion transmembrane transporter activity | 1.82E-03 |
| 26 | GO:0008266: poly(U) RNA binding | 1.97E-03 |
| 27 | GO:0051087: chaperone binding | 2.62E-03 |
| 28 | GO:0003743: translation initiation factor activity | 2.82E-03 |
| 29 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 3.91E-03 |
| 30 | GO:0004004: ATP-dependent RNA helicase activity | 6.50E-03 |
| 31 | GO:0003924: GTPase activity | 6.79E-03 |
| 32 | GO:0050897: cobalt ion binding | 7.72E-03 |
| 33 | GO:0005515: protein binding | 8.19E-03 |
| 34 | GO:0003697: single-stranded DNA binding | 8.23E-03 |
| 35 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.09E-02 |
| 36 | GO:0051287: NAD binding | 1.12E-02 |
| 37 | GO:0003690: double-stranded DNA binding | 1.24E-02 |
| 38 | GO:0019843: rRNA binding | 1.82E-02 |
| 39 | GO:0008565: protein transporter activity | 2.07E-02 |
| 40 | GO:0005524: ATP binding | 2.33E-02 |
| 41 | GO:0000287: magnesium ion binding | 3.09E-02 |
| 42 | GO:0008233: peptidase activity | 3.60E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043186: P granule | 0.00E+00 |
| 2 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 3 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 4 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 5 | GO:0005840: ribosome | 5.68E-17 |
| 6 | GO:0005730: nucleolus | 1.50E-15 |
| 7 | GO:0022625: cytosolic large ribosomal subunit | 1.80E-14 |
| 8 | GO:0022626: cytosolic ribosome | 1.49E-12 |
| 9 | GO:0015934: large ribosomal subunit | 6.13E-09 |
| 10 | GO:0005829: cytosol | 2.74E-08 |
| 11 | GO:0022627: cytosolic small ribosomal subunit | 9.10E-07 |
| 12 | GO:0009506: plasmodesma | 1.30E-06 |
| 13 | GO:0005758: mitochondrial intermembrane space | 1.31E-06 |
| 14 | GO:0005774: vacuolar membrane | 4.34E-06 |
| 15 | GO:0005773: vacuole | 1.92E-05 |
| 16 | GO:0015030: Cajal body | 2.88E-05 |
| 17 | GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m | 4.18E-05 |
| 18 | GO:0000015: phosphopyruvate hydratase complex | 1.04E-04 |
| 19 | GO:0034719: SMN-Sm protein complex | 1.78E-04 |
| 20 | GO:1990726: Lsm1-7-Pat1 complex | 2.63E-04 |
| 21 | GO:0031429: box H/ACA snoRNP complex | 2.63E-04 |
| 22 | GO:0005739: mitochondrion | 3.16E-04 |
| 23 | GO:0005682: U5 snRNP | 3.53E-04 |
| 24 | GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | 3.53E-04 |
| 25 | GO:0016020: membrane | 3.66E-04 |
| 26 | GO:0005737: cytoplasm | 3.99E-04 |
| 27 | GO:0005687: U4 snRNP | 4.50E-04 |
| 28 | GO:0097526: spliceosomal tri-snRNP complex | 4.50E-04 |
| 29 | GO:0031428: box C/D snoRNP complex | 5.51E-04 |
| 30 | GO:0005689: U12-type spliceosomal complex | 6.58E-04 |
| 31 | GO:0005743: mitochondrial inner membrane | 8.38E-04 |
| 32 | GO:0071004: U2-type prespliceosome | 8.84E-04 |
| 33 | GO:0005688: U6 snRNP | 8.84E-04 |
| 34 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 1.00E-03 |
| 35 | GO:0005742: mitochondrial outer membrane translocase complex | 1.00E-03 |
| 36 | GO:0005685: U1 snRNP | 1.13E-03 |
| 37 | GO:0005681: spliceosomal complex | 1.19E-03 |
| 38 | GO:0005747: mitochondrial respiratory chain complex I | 1.23E-03 |
| 39 | GO:0071011: precatalytic spliceosome | 1.25E-03 |
| 40 | GO:0005686: U2 snRNP | 1.39E-03 |
| 41 | GO:0005740: mitochondrial envelope | 1.39E-03 |
| 42 | GO:0071013: catalytic step 2 spliceosome | 1.53E-03 |
| 43 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.53E-03 |
| 44 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.55E-03 |
| 45 | GO:0032040: small-subunit processome | 1.67E-03 |
| 46 | GO:0019013: viral nucleocapsid | 1.82E-03 |
| 47 | GO:0005750: mitochondrial respiratory chain complex III | 1.97E-03 |
| 48 | GO:0005753: mitochondrial proton-transporting ATP synthase complex | 2.13E-03 |
| 49 | GO:0005759: mitochondrial matrix | 2.21E-03 |
| 50 | GO:0070469: respiratory chain | 2.62E-03 |
| 51 | GO:0005741: mitochondrial outer membrane | 2.80E-03 |
| 52 | GO:0009507: chloroplast | 8.70E-03 |
| 53 | GO:0048046: apoplast | 2.33E-02 |
| 54 | GO:0005618: cell wall | 2.60E-02 |
| 55 | GO:0005886: plasma membrane | 4.29E-02 |