GO Enrichment Analysis of Co-expressed Genes with
AT4G28450
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0017126: nucleologenesis | 0.00E+00 |
| 2 | GO:0039694: viral RNA genome replication | 0.00E+00 |
| 3 | GO:0002191: cap-dependent translational initiation | 0.00E+00 |
| 4 | GO:0042430: indole-containing compound metabolic process | 0.00E+00 |
| 5 | GO:0006457: protein folding | 4.49E-14 |
| 6 | GO:0046686: response to cadmium ion | 5.04E-08 |
| 7 | GO:0034976: response to endoplasmic reticulum stress | 5.51E-08 |
| 8 | GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response | 2.36E-05 |
| 9 | GO:0045454: cell redox homeostasis | 3.43E-05 |
| 10 | GO:0030968: endoplasmic reticulum unfolded protein response | 5.37E-05 |
| 11 | GO:0009408: response to heat | 5.51E-05 |
| 12 | GO:0090332: stomatal closure | 8.11E-05 |
| 13 | GO:0006390: transcription from mitochondrial promoter | 8.25E-05 |
| 14 | GO:0043687: post-translational protein modification | 8.25E-05 |
| 15 | GO:0042964: thioredoxin reduction | 8.25E-05 |
| 16 | GO:0009617: response to bacterium | 1.09E-04 |
| 17 | GO:0009682: induced systemic resistance | 1.14E-04 |
| 18 | GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine | 1.97E-04 |
| 19 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.97E-04 |
| 20 | GO:0010187: negative regulation of seed germination | 2.48E-04 |
| 21 | GO:0051302: regulation of cell division | 2.75E-04 |
| 22 | GO:0061077: chaperone-mediated protein folding | 3.03E-04 |
| 23 | GO:0055074: calcium ion homeostasis | 3.29E-04 |
| 24 | GO:0006421: asparaginyl-tRNA aminoacylation | 3.29E-04 |
| 25 | GO:0009553: embryo sac development | 3.69E-04 |
| 26 | GO:0009306: protein secretion | 3.94E-04 |
| 27 | GO:0009651: response to salt stress | 4.03E-04 |
| 28 | GO:0010116: positive regulation of abscisic acid biosynthetic process | 4.75E-04 |
| 29 | GO:0072334: UDP-galactose transmembrane transport | 4.75E-04 |
| 30 | GO:0007276: gamete generation | 4.75E-04 |
| 31 | GO:0051131: chaperone-mediated protein complex assembly | 4.75E-04 |
| 32 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 6.32E-04 |
| 33 | GO:0042742: defense response to bacterium | 6.77E-04 |
| 34 | GO:0006413: translational initiation | 7.01E-04 |
| 35 | GO:0018279: protein N-linked glycosylation via asparagine | 8.00E-04 |
| 36 | GO:0045116: protein neddylation | 8.00E-04 |
| 37 | GO:0009697: salicylic acid biosynthetic process | 8.00E-04 |
| 38 | GO:0001731: formation of translation preinitiation complex | 9.77E-04 |
| 39 | GO:0047484: regulation of response to osmotic stress | 9.77E-04 |
| 40 | GO:0042372: phylloquinone biosynthetic process | 1.16E-03 |
| 41 | GO:0006458: 'de novo' protein folding | 1.16E-03 |
| 42 | GO:1902074: response to salt | 1.36E-03 |
| 43 | GO:0006099: tricarboxylic acid cycle | 1.46E-03 |
| 44 | GO:0050821: protein stabilization | 1.57E-03 |
| 45 | GO:0019430: removal of superoxide radicals | 1.79E-03 |
| 46 | GO:0010120: camalexin biosynthetic process | 1.79E-03 |
| 47 | GO:0015780: nucleotide-sugar transport | 2.02E-03 |
| 48 | GO:0046685: response to arsenic-containing substance | 2.02E-03 |
| 49 | GO:0006790: sulfur compound metabolic process | 3.03E-03 |
| 50 | GO:0002213: defense response to insect | 3.03E-03 |
| 51 | GO:0009414: response to water deprivation | 3.04E-03 |
| 52 | GO:0010075: regulation of meristem growth | 3.31E-03 |
| 53 | GO:0006446: regulation of translational initiation | 3.59E-03 |
| 54 | GO:0009934: regulation of meristem structural organization | 3.59E-03 |
| 55 | GO:0046854: phosphatidylinositol phosphorylation | 3.88E-03 |
| 56 | GO:0046688: response to copper ion | 3.88E-03 |
| 57 | GO:0006825: copper ion transport | 4.80E-03 |
| 58 | GO:0009409: response to cold | 4.99E-03 |
| 59 | GO:0098542: defense response to other organism | 5.12E-03 |
| 60 | GO:0030433: ubiquitin-dependent ERAD pathway | 5.45E-03 |
| 61 | GO:0031348: negative regulation of defense response | 5.45E-03 |
| 62 | GO:0007131: reciprocal meiotic recombination | 5.45E-03 |
| 63 | GO:0010227: floral organ abscission | 5.78E-03 |
| 64 | GO:0008033: tRNA processing | 6.83E-03 |
| 65 | GO:0010501: RNA secondary structure unwinding | 6.83E-03 |
| 66 | GO:0010118: stomatal movement | 6.83E-03 |
| 67 | GO:0010197: polar nucleus fusion | 7.20E-03 |
| 68 | GO:0048868: pollen tube development | 7.20E-03 |
| 69 | GO:0055114: oxidation-reduction process | 8.10E-03 |
| 70 | GO:0080156: mitochondrial mRNA modification | 8.33E-03 |
| 71 | GO:0030163: protein catabolic process | 9.12E-03 |
| 72 | GO:0009567: double fertilization forming a zygote and endosperm | 9.53E-03 |
| 73 | GO:0010252: auxin homeostasis | 9.53E-03 |
| 74 | GO:0009860: pollen tube growth | 9.75E-03 |
| 75 | GO:0010286: heat acclimation | 9.94E-03 |
| 76 | GO:0009615: response to virus | 1.08E-02 |
| 77 | GO:0016126: sterol biosynthetic process | 1.08E-02 |
| 78 | GO:0009816: defense response to bacterium, incompatible interaction | 1.12E-02 |
| 79 | GO:0009627: systemic acquired resistance | 1.17E-02 |
| 80 | GO:0044550: secondary metabolite biosynthetic process | 1.22E-02 |
| 81 | GO:0016311: dephosphorylation | 1.26E-02 |
| 82 | GO:0016049: cell growth | 1.26E-02 |
| 83 | GO:0009817: defense response to fungus, incompatible interaction | 1.30E-02 |
| 84 | GO:0048481: plant ovule development | 1.30E-02 |
| 85 | GO:0009407: toxin catabolic process | 1.39E-02 |
| 86 | GO:0007568: aging | 1.44E-02 |
| 87 | GO:0050832: defense response to fungus | 1.64E-02 |
| 88 | GO:0000154: rRNA modification | 2.00E-02 |
| 89 | GO:0009636: response to toxic substance | 2.00E-02 |
| 90 | GO:0009965: leaf morphogenesis | 2.00E-02 |
| 91 | GO:0009846: pollen germination | 2.16E-02 |
| 92 | GO:0006486: protein glycosylation | 2.28E-02 |
| 93 | GO:0006417: regulation of translation | 2.45E-02 |
| 94 | GO:0048316: seed development | 2.62E-02 |
| 95 | GO:0009735: response to cytokinin | 2.70E-02 |
| 96 | GO:0009555: pollen development | 2.95E-02 |
| 97 | GO:0006412: translation | 3.75E-02 |
| 98 | GO:0009790: embryo development | 3.83E-02 |
| 99 | GO:0007166: cell surface receptor signaling pathway | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016312: inositol bisphosphate phosphatase activity | 0.00E+00 |
| 2 | GO:0047720: indoleacetaldoxime dehydratase activity | 0.00E+00 |
| 3 | GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity | 0.00E+00 |
| 4 | GO:0004631: phosphomevalonate kinase activity | 0.00E+00 |
| 5 | GO:0098808: mRNA cap binding | 0.00E+00 |
| 6 | GO:0051082: unfolded protein binding | 1.30E-11 |
| 7 | GO:0005460: UDP-glucose transmembrane transporter activity | 3.39E-06 |
| 8 | GO:0005459: UDP-galactose transmembrane transporter activity | 1.08E-05 |
| 9 | GO:0003756: protein disulfide isomerase activity | 1.38E-05 |
| 10 | GO:0000166: nucleotide binding | 2.06E-05 |
| 11 | GO:0008909: isochorismate synthase activity | 8.25E-05 |
| 12 | GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity | 8.25E-05 |
| 13 | GO:0048037: cofactor binding | 8.25E-05 |
| 14 | GO:0005524: ATP binding | 1.30E-04 |
| 15 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 1.97E-04 |
| 16 | GO:0019781: NEDD8 activating enzyme activity | 1.97E-04 |
| 17 | GO:0043021: ribonucleoprotein complex binding | 1.97E-04 |
| 18 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 1.97E-04 |
| 19 | GO:0004816: asparagine-tRNA ligase activity | 3.29E-04 |
| 20 | GO:0000030: mannosyltransferase activity | 3.29E-04 |
| 21 | GO:0016531: copper chaperone activity | 3.29E-04 |
| 22 | GO:0004148: dihydrolipoyl dehydrogenase activity | 3.29E-04 |
| 23 | GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity | 3.29E-04 |
| 24 | GO:0010181: FMN binding | 5.32E-04 |
| 25 | GO:0004576: oligosaccharyl transferase activity | 6.32E-04 |
| 26 | GO:0002020: protease binding | 8.00E-04 |
| 27 | GO:0008641: small protein activating enzyme activity | 8.00E-04 |
| 28 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 8.00E-04 |
| 29 | GO:0003743: translation initiation factor activity | 9.27E-04 |
| 30 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.16E-03 |
| 31 | GO:0030515: snoRNA binding | 1.36E-03 |
| 32 | GO:0008135: translation factor activity, RNA binding | 1.79E-03 |
| 33 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 2.37E-03 |
| 34 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.40E-03 |
| 35 | GO:0001054: RNA polymerase I activity | 2.77E-03 |
| 36 | GO:0008559: xenobiotic-transporting ATPase activity | 2.77E-03 |
| 37 | GO:0044183: protein binding involved in protein folding | 2.77E-03 |
| 38 | GO:0005509: calcium ion binding | 2.79E-03 |
| 39 | GO:0004022: alcohol dehydrogenase (NAD) activity | 3.31E-03 |
| 40 | GO:0031072: heat shock protein binding | 3.31E-03 |
| 41 | GO:0004298: threonine-type endopeptidase activity | 5.12E-03 |
| 42 | GO:0020037: heme binding | 6.30E-03 |
| 43 | GO:0004791: thioredoxin-disulfide reductase activity | 7.57E-03 |
| 44 | GO:0016853: isomerase activity | 7.57E-03 |
| 45 | GO:0030246: carbohydrate binding | 8.45E-03 |
| 46 | GO:0005507: copper ion binding | 9.08E-03 |
| 47 | GO:0019825: oxygen binding | 9.08E-03 |
| 48 | GO:0008233: peptidase activity | 1.10E-02 |
| 49 | GO:0030247: polysaccharide binding | 1.21E-02 |
| 50 | GO:0004004: ATP-dependent RNA helicase activity | 1.21E-02 |
| 51 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.30E-02 |
| 52 | GO:0005506: iron ion binding | 1.39E-02 |
| 53 | GO:0050897: cobalt ion binding | 1.44E-02 |
| 54 | GO:0003746: translation elongation factor activity | 1.54E-02 |
| 55 | GO:0003697: single-stranded DNA binding | 1.54E-02 |
| 56 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.69E-02 |
| 57 | GO:0004364: glutathione transferase activity | 1.79E-02 |
| 58 | GO:0043621: protein self-association | 1.95E-02 |
| 59 | GO:0016491: oxidoreductase activity | 2.01E-02 |
| 60 | GO:0003729: mRNA binding | 2.34E-02 |
| 61 | GO:0016887: ATPase activity | 2.58E-02 |
| 62 | GO:0015035: protein disulfide oxidoreductase activity | 2.99E-02 |
| 63 | GO:0016746: transferase activity, transferring acyl groups | 2.99E-02 |
| 64 | GO:0008026: ATP-dependent helicase activity | 3.05E-02 |
| 65 | GO:0004386: helicase activity | 3.11E-02 |
| 66 | GO:0003735: structural constituent of ribosome | 3.37E-02 |
| 67 | GO:0004674: protein serine/threonine kinase activity | 3.45E-02 |
| 68 | GO:0016829: lyase activity | 3.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019034: viral replication complex | 0.00E+00 |
| 2 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 3 | GO:0005788: endoplasmic reticulum lumen | 3.57E-14 |
| 4 | GO:0005783: endoplasmic reticulum | 5.44E-13 |
| 5 | GO:0005774: vacuolar membrane | 2.01E-07 |
| 6 | GO:0005829: cytosol | 2.03E-07 |
| 7 | GO:0034245: mitochondrial DNA-directed RNA polymerase complex | 8.25E-05 |
| 8 | GO:0045252: oxoglutarate dehydrogenase complex | 8.25E-05 |
| 9 | GO:0070545: PeBoW complex | 1.97E-04 |
| 10 | GO:0030176: integral component of endoplasmic reticulum membrane | 1.98E-04 |
| 11 | GO:0009507: chloroplast | 6.15E-04 |
| 12 | GO:0016592: mediator complex | 6.48E-04 |
| 13 | GO:0008250: oligosaccharyltransferase complex | 8.00E-04 |
| 14 | GO:0016282: eukaryotic 43S preinitiation complex | 9.77E-04 |
| 15 | GO:0031428: box C/D snoRNP complex | 9.77E-04 |
| 16 | GO:0033290: eukaryotic 48S preinitiation complex | 1.16E-03 |
| 17 | GO:0030173: integral component of Golgi membrane | 1.16E-03 |
| 18 | GO:0005762: mitochondrial large ribosomal subunit | 1.16E-03 |
| 19 | GO:0030687: preribosome, large subunit precursor | 1.36E-03 |
| 20 | GO:0019773: proteasome core complex, alpha-subunit complex | 1.79E-03 |
| 21 | GO:0005739: mitochondrion | 2.02E-03 |
| 22 | GO:0005736: DNA-directed RNA polymerase I complex | 2.02E-03 |
| 23 | GO:0016020: membrane | 2.58E-03 |
| 24 | GO:0005852: eukaryotic translation initiation factor 3 complex | 2.77E-03 |
| 25 | GO:0009506: plasmodesma | 2.82E-03 |
| 26 | GO:0032040: small-subunit processome | 3.03E-03 |
| 27 | GO:0005773: vacuole | 3.79E-03 |
| 28 | GO:0043234: protein complex | 4.18E-03 |
| 29 | GO:0005886: plasma membrane | 4.27E-03 |
| 30 | GO:0005758: mitochondrial intermembrane space | 4.48E-03 |
| 31 | GO:0005839: proteasome core complex | 5.12E-03 |
| 32 | GO:0005759: mitochondrial matrix | 5.32E-03 |
| 33 | GO:0048046: apoplast | 6.46E-03 |
| 34 | GO:0005618: cell wall | 7.50E-03 |
| 35 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 9.93E-03 |
| 36 | GO:0015934: large ribosomal subunit | 1.44E-02 |
| 37 | GO:0000325: plant-type vacuole | 1.44E-02 |
| 38 | GO:0005794: Golgi apparatus | 1.54E-02 |
| 39 | GO:0009536: plastid | 1.84E-02 |
| 40 | GO:0009505: plant-type cell wall | 1.89E-02 |
| 41 | GO:0000502: proteasome complex | 2.28E-02 |
| 42 | GO:0005789: endoplasmic reticulum membrane | 2.42E-02 |
| 43 | GO:0005747: mitochondrial respiratory chain complex I | 2.62E-02 |
| 44 | GO:0005834: heterotrimeric G-protein complex | 2.68E-02 |