Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G28300

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019566: arabinose metabolic process0.00E+00
2GO:0000244: spliceosomal tri-snRNP complex assembly0.00E+00
3GO:0071902: positive regulation of protein serine/threonine kinase activity7.41E-06
4GO:1903648: positive regulation of chlorophyll catabolic process7.41E-06
5GO:0043631: RNA polyadenylation2.00E-05
6GO:0010506: regulation of autophagy3.67E-05
7GO:0071230: cellular response to amino acid stimulus3.67E-05
8GO:0031929: TOR signaling3.67E-05
9GO:0019048: modulation by virus of host morphology or physiology5.65E-05
10GO:0006346: methylation-dependent chromatin silencing7.90E-05
11GO:0010483: pollen tube reception7.90E-05
12GO:0030308: negative regulation of cell growth1.04E-04
13GO:0009267: cellular response to starvation1.30E-04
14GO:1900057: positive regulation of leaf senescence1.88E-04
15GO:0006333: chromatin assembly or disassembly1.88E-04
16GO:0030307: positive regulation of cell growth1.88E-04
17GO:0007338: single fertilization2.85E-04
18GO:0006378: mRNA polyadenylation3.90E-04
19GO:0008361: regulation of cell size4.26E-04
20GO:0010223: secondary shoot formation5.02E-04
21GO:0010540: basipetal auxin transport5.02E-04
22GO:0070417: cellular response to cold8.75E-04
23GO:0009741: response to brassinosteroid9.64E-04
24GO:0009791: post-embryonic development1.06E-03
25GO:0006891: intra-Golgi vesicle-mediated transport1.10E-03
26GO:0031047: gene silencing by RNA1.15E-03
27GO:0019760: glucosinolate metabolic process1.25E-03
28GO:0051607: defense response to virus1.35E-03
29GO:0009738: abscisic acid-activated signaling pathway1.41E-03
30GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.45E-03
31GO:0016049: cell growth1.61E-03
32GO:0031347: regulation of defense response2.63E-03
33GO:0006417: regulation of translation3.03E-03
34GO:0009742: brassinosteroid mediated signaling pathway3.73E-03
35GO:0000398: mRNA splicing, via spliceosome3.95E-03
36GO:0009845: seed germination4.41E-03
37GO:0010150: leaf senescence5.21E-03
38GO:0006470: protein dephosphorylation5.71E-03
39GO:0008380: RNA splicing5.88E-03
40GO:0009793: embryo development ending in seed dormancy6.65E-03
41GO:0009723: response to ethylene7.79E-03
42GO:0046777: protein autophosphorylation8.57E-03
43GO:0006508: proteolysis8.84E-03
44GO:0006886: intracellular protein transport9.48E-03
45GO:0048364: root development1.11E-02
46GO:0009873: ethylene-activated signaling pathway1.29E-02
47GO:0009734: auxin-activated signaling pathway1.37E-02
48GO:0035556: intracellular signal transduction1.68E-02
49GO:0045893: positive regulation of transcription, DNA-templated1.78E-02
50GO:0006468: protein phosphorylation2.24E-02
51GO:0009414: response to water deprivation2.62E-02
52GO:0042742: defense response to bacterium2.67E-02
53GO:0009409: response to cold3.31E-02
54GO:0009737: response to abscisic acid4.57E-02
RankGO TermAdjusted P value
1GO:0009702: L-arabinokinase activity0.00E+00
2GO:0004652: polynucleotide adenylyltransferase activity5.65E-05
3GO:0035197: siRNA binding5.65E-05
4GO:0004335: galactokinase activity7.90E-05
5GO:0030674: protein binding, bridging2.20E-04
6GO:0008138: protein tyrosine/serine/threonine phosphatase activity2.85E-04
7GO:0000976: transcription regulatory region sequence-specific DNA binding4.26E-04
8GO:0004725: protein tyrosine phosphatase activity5.80E-04
9GO:0005515: protein binding7.00E-04
10GO:0016779: nucleotidyltransferase activity7.45E-04
11GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity1.30E-03
12GO:0000166: nucleotide binding1.45E-03
13GO:0004386: helicase activity3.81E-03
14GO:0003723: RNA binding3.92E-03
15GO:0004672: protein kinase activity4.24E-03
16GO:0003729: mRNA binding4.29E-03
17GO:0004252: serine-type endopeptidase activity4.49E-03
18GO:0008565: protein transporter activity4.72E-03
19GO:0005524: ATP binding6.23E-03
20GO:0003682: chromatin binding7.32E-03
21GO:0008233: peptidase activity8.08E-03
22GO:0016301: kinase activity1.04E-02
23GO:0004674: protein serine/threonine kinase activity1.42E-02
24GO:0044212: transcription regulatory region DNA binding2.67E-02
25GO:0004842: ubiquitin-protein transferase activity3.36E-02
RankGO TermAdjusted P value
1GO:0005690: U4atac snRNP0.00E+00
2GO:0043680: filiform apparatus0.00E+00
3GO:0031931: TORC1 complex3.67E-05
4GO:0005687: U4 snRNP1.04E-04
5GO:0097526: spliceosomal tri-snRNP complex1.04E-04
6GO:0046540: U4/U6 x U5 tri-snRNP complex2.52E-04
7GO:0071011: precatalytic spliceosome3.19E-04
8GO:0015030: Cajal body3.19E-04
9GO:0005795: Golgi stack5.40E-04
10GO:0030529: intracellular ribonucleoprotein complex1.40E-03
11GO:0005737: cytoplasm2.89E-03
12GO:0080008: Cul4-RING E3 ubiquitin ligase complex7.50E-03
13GO:0009506: plasmodesma7.66E-03
14GO:0005634: nucleus3.05E-02
15GO:0009505: plant-type cell wall3.13E-02
16GO:0005730: nucleolus3.88E-02
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Gene type



Gene DE type