co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28200

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
2	GO:0071433: cell wall repair	0.00E+00
3	GO:0080056: petal vascular tissue pattern formation	0.00E+00
4	GO:0039694: viral RNA genome replication	0.00E+00
5	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
6	GO:0006390: transcription from mitochondrial promoter	1.67E-05
7	GO:0006177: GMP biosynthetic process	1.67E-05
8	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.35E-05
9	GO:0045039: protein import into mitochondrial inner membrane	7.77E-05
10	GO:0007276: gamete generation	1.17E-04
11	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.61E-04
12	GO:0051205: protein insertion into membrane	1.61E-04
13	GO:0006564: L-serine biosynthetic process	2.09E-04
14	GO:0006461: protein complex assembly	2.09E-04
15	GO:0000741: karyogamy	2.59E-04
16	GO:0006458: 'de novo' protein folding	3.11E-04
17	GO:0006875: cellular metal ion homeostasis	4.23E-04
18	GO:0098656: anion transmembrane transport	5.42E-04
19	GO:0007338: single fertilization	5.42E-04
20	GO:0006820: anion transport	8.01E-04
21	GO:0010588: cotyledon vascular tissue pattern formation	8.70E-04
22	GO:0051302: regulation of cell division	1.23E-03
23	GO:0042254: ribosome biogenesis	1.24E-03
24	GO:0061077: chaperone-mediated protein folding	1.31E-03
25	GO:0009561: megagametogenesis	1.56E-03
26	GO:0010501: RNA secondary structure unwinding	1.73E-03
27	GO:0010197: polar nucleus fusion	1.82E-03
28	GO:0010305: leaf vascular tissue pattern formation	1.82E-03
29	GO:0006635: fatty acid beta-oxidation	2.09E-03
30	GO:0080156: mitochondrial mRNA modification	2.09E-03
31	GO:0048364: root development	2.27E-03
32	GO:0009567: double fertilization forming a zygote and endosperm	2.38E-03
33	GO:0016126: sterol biosynthetic process	2.68E-03
34	GO:0048481: plant ovule development	3.20E-03
35	GO:0009555: pollen development	3.83E-03
36	GO:0000154: rRNA modification	4.83E-03
37	GO:0006364: rRNA processing	5.48E-03
38	GO:0048367: shoot system development	6.28E-03
39	GO:0009553: embryo sac development	6.84E-03
40	GO:0006412: translation	8.45E-03
41	GO:0009451: RNA modification	1.04E-02
42	GO:0009409: response to cold	1.05E-02
43	GO:0009617: response to bacterium	1.16E-02
44	GO:0046686: response to cadmium ion	1.21E-02
45	GO:0009860: pollen tube growth	1.47E-02
46	GO:0048366: leaf development	1.56E-02
47	GO:0009793: embryo development ending in seed dormancy	1.80E-02
48	GO:0045454: cell redox homeostasis	1.84E-02
49	GO:0006414: translational elongation	4.28E-02
50	GO:0006952: defense response	4.30E-02

Rank	GO Term	Adjusted P value
1	GO:0004631: phosphomevalonate kinase activity	0.00E+00
2	GO:0050220: prostaglandin-E synthase activity	0.00E+00
3	GO:0003746: translation elongation factor activity	4.11E-06
4	GO:0004617: phosphoglycerate dehydrogenase activity	4.35E-05
5	GO:0043021: ribonucleoprotein complex binding	4.35E-05
6	GO:0003938: IMP dehydrogenase activity	4.35E-05
7	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	2.59E-04
8	GO:0030515: snoRNA binding	3.66E-04
9	GO:0003735: structural constituent of ribosome	3.85E-04
10	GO:0015288: porin activity	4.23E-04
11	GO:0000166: nucleotide binding	4.41E-04
12	GO:0008135: translation factor activity, RNA binding	4.82E-04
13	GO:0008308: voltage-gated anion channel activity	4.82E-04
14	GO:0044183: protein binding involved in protein folding	7.34E-04
15	GO:0005525: GTP binding	8.21E-04
16	GO:0016597: amino acid binding	2.57E-03
17	GO:0004004: ATP-dependent RNA helicase activity	2.99E-03
18	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.20E-03
19	GO:0050897: cobalt ion binding	3.53E-03
20	GO:0003697: single-stranded DNA binding	3.76E-03
21	GO:0051287: NAD binding	5.09E-03
22	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	5.48E-03
23	GO:0051082: unfolded protein binding	6.99E-03
24	GO:0015035: protein disulfide oxidoreductase activity	7.13E-03
25	GO:0008026: ATP-dependent helicase activity	7.28E-03
26	GO:0004386: helicase activity	7.42E-03
27	GO:0019843: rRNA binding	8.17E-03
28	GO:0003729: mRNA binding	1.15E-02
29	GO:0005524: ATP binding	1.30E-02
30	GO:0003723: RNA binding	1.41E-02
31	GO:0003924: GTPase activity	2.14E-02
32	GO:0009055: electron carrier activity	2.25E-02
33	GO:0004519: endonuclease activity	2.27E-02
34	GO:0003677: DNA binding	2.41E-02
35	GO:0003676: nucleic acid binding	3.20E-02
36	GO:0016740: transferase activity	3.71E-02
37	GO:0005507: copper ion binding	4.14E-02

Rank	GO Term	Adjusted P value
1	GO:0019034: viral replication complex	0.00E+00
2	GO:0005832: chaperonin-containing T-complex	0.00E+00
3	GO:0005739: mitochondrion	4.98E-10
4	GO:0034245: mitochondrial DNA-directed RNA polymerase complex	1.67E-05
5	GO:0070545: PeBoW complex	4.35E-05
6	GO:0031428: box C/D snoRNP complex	2.59E-04
7	GO:0005762: mitochondrial large ribosomal subunit	3.11E-04
8	GO:0030687: preribosome, large subunit precursor	3.66E-04
9	GO:0046930: pore complex	4.82E-04
10	GO:0032040: small-subunit processome	8.01E-04
11	GO:0043234: protein complex	1.08E-03
12	GO:0005741: mitochondrial outer membrane	1.31E-03
13	GO:0009536: plastid	1.36E-03
14	GO:0015934: large ribosomal subunit	3.53E-03
15	GO:0005618: cell wall	5.97E-03
16	GO:0005747: mitochondrial respiratory chain complex I	6.28E-03
17	GO:0005834: heterotrimeric G-protein complex	6.42E-03
18	GO:0005840: ribosome	8.10E-03
19	GO:0005730: nucleolus	1.31E-02
20	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.49E-02
21	GO:0005743: mitochondrial inner membrane	2.03E-02
22	GO:0005774: vacuolar membrane	2.69E-02
23	GO:0005777: peroxisome	3.55E-02
24	GO:0009941: chloroplast envelope	3.65E-02
25	GO:0005773: vacuole	4.12E-02