co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28080

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0090706: specification of plant organ position	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:0061635: regulation of protein complex stability	0.00E+00
7	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
8	GO:0016553: base conversion or substitution editing	0.00E+00
9	GO:0000372: Group I intron splicing	0.00E+00
10	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
11	GO:0006399: tRNA metabolic process	0.00E+00
12	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
13	GO:0006412: translation	1.99E-10
14	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.84E-06
15	GO:0015995: chlorophyll biosynthetic process	8.73E-06
16	GO:0032544: plastid translation	1.78E-05
17	GO:0006518: peptide metabolic process	2.05E-05
18	GO:0009793: embryo development ending in seed dormancy	2.40E-05
19	GO:0042254: ribosome biogenesis	3.09E-05
20	GO:2001141: regulation of RNA biosynthetic process	4.51E-05
21	GO:0032543: mitochondrial translation	1.25E-04
22	GO:0045038: protein import into chloroplast thylakoid membrane	1.25E-04
23	GO:0006655: phosphatidylglycerol biosynthetic process	1.80E-04
24	GO:0010190: cytochrome b6f complex assembly	1.80E-04
25	GO:0042549: photosystem II stabilization	1.80E-04
26	GO:0009658: chloroplast organization	1.98E-04
27	GO:0009772: photosynthetic electron transport in photosystem II	3.16E-04
28	GO:0006821: chloride transport	3.16E-04
29	GO:0010450: inflorescence meristem growth	3.60E-04
30	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.60E-04
31	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	3.60E-04
32	GO:0000476: maturation of 4.5S rRNA	3.60E-04
33	GO:0000967: rRNA 5'-end processing	3.60E-04
34	GO:0043489: RNA stabilization	3.60E-04
35	GO:0071370: cellular response to gibberellin stimulus	3.60E-04
36	GO:0010480: microsporocyte differentiation	3.60E-04
37	GO:0006426: glycyl-tRNA aminoacylation	3.60E-04
38	GO:0000481: maturation of 5S rRNA	3.60E-04
39	GO:0042547: cell wall modification involved in multidimensional cell growth	3.60E-04
40	GO:0042371: vitamin K biosynthetic process	3.60E-04
41	GO:0071461: cellular response to redox state	3.60E-04
42	GO:1902458: positive regulation of stomatal opening	3.60E-04
43	GO:0034337: RNA folding	3.60E-04
44	GO:0071482: cellular response to light stimulus	4.86E-04
45	GO:0009657: plastid organization	4.86E-04
46	GO:0010206: photosystem II repair	5.82E-04
47	GO:0034470: ncRNA processing	7.83E-04
48	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.83E-04
49	GO:0080005: photosystem stoichiometry adjustment	7.83E-04
50	GO:0034755: iron ion transmembrane transport	7.83E-04
51	GO:0018026: peptidyl-lysine monomethylation	7.83E-04
52	GO:1904143: positive regulation of carotenoid biosynthetic process	7.83E-04
53	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.83E-04
54	GO:0010270: photosystem II oxygen evolving complex assembly	7.83E-04
55	GO:0009773: photosynthetic electron transport in photosystem I	9.22E-04
56	GO:0006352: DNA-templated transcription, initiation	9.22E-04
57	GO:0018119: peptidyl-cysteine S-nitrosylation	9.22E-04
58	GO:0016024: CDP-diacylglycerol biosynthetic process	1.05E-03
59	GO:0006954: inflammatory response	1.27E-03
60	GO:0006013: mannose metabolic process	1.27E-03
61	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.27E-03
62	GO:0043617: cellular response to sucrose starvation	1.27E-03
63	GO:0045493: xylan catabolic process	1.27E-03
64	GO:0005977: glycogen metabolic process	1.27E-03
65	GO:0045165: cell fate commitment	1.27E-03
66	GO:0006011: UDP-glucose metabolic process	1.27E-03
67	GO:0010207: photosystem II assembly	1.34E-03
68	GO:0009226: nucleotide-sugar biosynthetic process	1.83E-03
69	GO:0006424: glutamyl-tRNA aminoacylation	1.83E-03
70	GO:0016556: mRNA modification	1.83E-03
71	GO:0043572: plastid fission	1.83E-03
72	GO:1902476: chloride transmembrane transport	1.83E-03
73	GO:0009735: response to cytokinin	1.85E-03
74	GO:0006418: tRNA aminoacylation for protein translation	2.05E-03
75	GO:0061077: chaperone-mediated protein folding	2.25E-03
76	GO:0009451: RNA modification	2.28E-03
77	GO:0006730: one-carbon metabolic process	2.46E-03
78	GO:0009306: protein secretion	2.92E-03
79	GO:0010158: abaxial cell fate specification	3.14E-03
80	GO:0009247: glycolipid biosynthetic process	3.14E-03
81	GO:0080110: sporopollenin biosynthetic process	3.14E-03
82	GO:0010236: plastoquinone biosynthetic process	3.14E-03
83	GO:1902183: regulation of shoot apical meristem development	3.14E-03
84	GO:0016117: carotenoid biosynthetic process	3.16E-03
85	GO:0000470: maturation of LSU-rRNA	3.88E-03
86	GO:0006828: manganese ion transport	3.88E-03
87	GO:0032973: amino acid export	3.88E-03
88	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.88E-03
89	GO:0000741: karyogamy	3.88E-03
90	GO:0010942: positive regulation of cell death	3.88E-03
91	GO:0006354: DNA-templated transcription, elongation	3.88E-03
92	GO:0010405: arabinogalactan protein metabolic process	3.88E-03
93	GO:0009646: response to absence of light	3.96E-03
94	GO:0042372: phylloquinone biosynthetic process	4.67E-03
95	GO:0042026: protein refolding	4.67E-03
96	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.67E-03
97	GO:0006458: 'de novo' protein folding	4.67E-03
98	GO:1901259: chloroplast rRNA processing	4.67E-03
99	GO:0006508: proteolysis	5.26E-03
100	GO:0006396: RNA processing	5.41E-03
101	GO:0009395: phospholipid catabolic process	5.52E-03
102	GO:0043090: amino acid import	5.52E-03
103	GO:0048437: floral organ development	5.52E-03
104	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.52E-03
105	GO:0045995: regulation of embryonic development	5.52E-03
106	GO:0048564: photosystem I assembly	6.41E-03
107	GO:0019375: galactolipid biosynthetic process	6.41E-03
108	GO:0032508: DNA duplex unwinding	6.41E-03
109	GO:2000070: regulation of response to water deprivation	6.41E-03
110	GO:0010492: maintenance of shoot apical meristem identity	6.41E-03
111	GO:0052543: callose deposition in cell wall	6.41E-03
112	GO:0010027: thylakoid membrane organization	6.58E-03
113	GO:0015979: photosynthesis	7.28E-03
114	GO:0042128: nitrate assimilation	7.35E-03
115	GO:0006526: arginine biosynthetic process	7.36E-03
116	GO:0010093: specification of floral organ identity	7.36E-03
117	GO:0009051: pentose-phosphate shunt, oxidative branch	8.35E-03
118	GO:0009821: alkaloid biosynthetic process	8.35E-03
119	GO:0006098: pentose-phosphate shunt	8.35E-03
120	GO:0080144: amino acid homeostasis	8.35E-03
121	GO:2000024: regulation of leaf development	8.35E-03
122	GO:0048507: meristem development	8.35E-03
123	GO:0000373: Group II intron splicing	8.35E-03
124	GO:0009790: embryo development	8.46E-03
125	GO:0010205: photoinhibition	9.38E-03
126	GO:0055062: phosphate ion homeostasis	1.05E-02
127	GO:0006816: calcium ion transport	1.16E-02
128	GO:0019684: photosynthesis, light reaction	1.16E-02
129	GO:0009089: lysine biosynthetic process via diaminopimelate	1.16E-02
130	GO:0009073: aromatic amino acid family biosynthetic process	1.16E-02
131	GO:0006415: translational termination	1.16E-02
132	GO:0006879: cellular iron ion homeostasis	1.16E-02
133	GO:0048229: gametophyte development	1.16E-02
134	GO:0015706: nitrate transport	1.28E-02
135	GO:0045037: protein import into chloroplast stroma	1.28E-02
136	GO:0030048: actin filament-based movement	1.40E-02
137	GO:0010628: positive regulation of gene expression	1.40E-02
138	GO:0006006: glucose metabolic process	1.40E-02
139	GO:0009718: anthocyanin-containing compound biosynthetic process	1.40E-02
140	GO:0010075: regulation of meristem growth	1.40E-02
141	GO:0006094: gluconeogenesis	1.40E-02
142	GO:0009767: photosynthetic electron transport chain	1.40E-02
143	GO:0010114: response to red light	1.41E-02
144	GO:0048768: root hair cell tip growth	1.52E-02
145	GO:0010020: chloroplast fission	1.52E-02
146	GO:0009933: meristem structural organization	1.52E-02
147	GO:0019253: reductive pentose-phosphate cycle	1.52E-02
148	GO:0009934: regulation of meristem structural organization	1.52E-02
149	GO:0010167: response to nitrate	1.65E-02
150	GO:0005985: sucrose metabolic process	1.65E-02
151	GO:0090351: seedling development	1.65E-02
152	GO:0006636: unsaturated fatty acid biosynthetic process	1.78E-02
153	GO:0009944: polarity specification of adaxial/abaxial axis	1.92E-02
154	GO:0006096: glycolytic process	2.26E-02
155	GO:0009814: defense response, incompatible interaction	2.35E-02
156	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.50E-02
157	GO:0009416: response to light stimulus	2.54E-02
158	GO:0042742: defense response to bacterium	2.58E-02
159	GO:0055114: oxidation-reduction process	2.64E-02
160	GO:0010584: pollen exine formation	2.65E-02
161	GO:0048653: anther development	2.97E-02
162	GO:0080022: primary root development	2.97E-02
163	GO:0000413: protein peptidyl-prolyl isomerization	2.97E-02
164	GO:0006520: cellular amino acid metabolic process	3.13E-02
165	GO:0010154: fruit development	3.13E-02
166	GO:0010197: polar nucleus fusion	3.13E-02
167	GO:0009741: response to brassinosteroid	3.13E-02
168	GO:0006814: sodium ion transport	3.30E-02
169	GO:0071554: cell wall organization or biogenesis	3.64E-02
170	GO:0002229: defense response to oomycetes	3.64E-02
171	GO:0000302: response to reactive oxygen species	3.64E-02
172	GO:0032259: methylation	3.68E-02
173	GO:0032502: developmental process	3.81E-02
174	GO:0042744: hydrogen peroxide catabolic process	3.87E-02
175	GO:0030163: protein catabolic process	3.99E-02
176	GO:0006397: mRNA processing	4.09E-02
177	GO:0009409: response to cold	4.25E-02
178	GO:0001666: response to hypoxia	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
8	GO:0004823: leucine-tRNA ligase activity	0.00E+00
9	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
10	GO:0005048: signal sequence binding	0.00E+00
11	GO:0019843: rRNA binding	5.31E-19
12	GO:0003735: structural constituent of ribosome	1.48E-12
13	GO:0016851: magnesium chelatase activity	2.39E-07
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.87E-06
15	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.84E-06
16	GO:0005528: FK506 binding	7.05E-06
17	GO:0004222: metalloendopeptidase activity	1.45E-05
18	GO:0002161: aminoacyl-tRNA editing activity	2.05E-05
19	GO:0008237: metallopeptidase activity	7.64E-05
20	GO:0016987: sigma factor activity	8.00E-05
21	GO:0001053: plastid sigma factor activity	8.00E-05
22	GO:0005247: voltage-gated chloride channel activity	1.80E-04
23	GO:0004176: ATP-dependent peptidase activity	2.13E-04
24	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.60E-04
25	GO:0004856: xylulokinase activity	3.60E-04
26	GO:0009671: nitrate:proton symporter activity	3.60E-04
27	GO:0045485: omega-6 fatty acid desaturase activity	3.60E-04
28	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.60E-04
29	GO:0004820: glycine-tRNA ligase activity	3.60E-04
30	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.60E-04
31	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	7.83E-04
32	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.83E-04
33	GO:0004618: phosphoglycerate kinase activity	7.83E-04
34	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.83E-04
35	GO:0003913: DNA photolyase activity	1.27E-03
36	GO:0030267: glyoxylate reductase (NADP) activity	1.27E-03
37	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	1.27E-03
38	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.27E-03
39	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	1.27E-03
40	GO:0008266: poly(U) RNA binding	1.34E-03
41	GO:0035250: UDP-galactosyltransferase activity	1.83E-03
42	GO:0016149: translation release factor activity, codon specific	1.83E-03
43	GO:0043023: ribosomal large subunit binding	1.83E-03
44	GO:0008097: 5S rRNA binding	1.83E-03
45	GO:0008508: bile acid:sodium symporter activity	1.83E-03
46	GO:0009044: xylan 1,4-beta-xylosidase activity	2.45E-03
47	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.45E-03
48	GO:0005253: anion channel activity	2.45E-03
49	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.45E-03
50	GO:0046556: alpha-L-arabinofuranosidase activity	2.45E-03
51	GO:0004659: prenyltransferase activity	2.45E-03
52	GO:0016279: protein-lysine N-methyltransferase activity	2.45E-03
53	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.45E-03
54	GO:0008374: O-acyltransferase activity	3.14E-03
55	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.14E-03
56	GO:0004812: aminoacyl-tRNA ligase activity	3.16E-03
57	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.32E-03
58	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.88E-03
59	GO:0004332: fructose-bisphosphate aldolase activity	3.88E-03
60	GO:0004130: cytochrome-c peroxidase activity	3.88E-03
61	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.88E-03
62	GO:0042578: phosphoric ester hydrolase activity	3.88E-03
63	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.67E-03
64	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.67E-03
65	GO:0004559: alpha-mannosidase activity	4.67E-03
66	GO:0051920: peroxiredoxin activity	4.67E-03
67	GO:0003723: RNA binding	5.23E-03
68	GO:0009881: photoreceptor activity	5.52E-03
69	GO:0016887: ATPase activity	6.05E-03
70	GO:0008312: 7S RNA binding	6.41E-03
71	GO:0004033: aldo-keto reductase (NADP) activity	6.41E-03
72	GO:0004564: beta-fructofuranosidase activity	6.41E-03
73	GO:0016209: antioxidant activity	6.41E-03
74	GO:0004252: serine-type endopeptidase activity	7.94E-03
75	GO:0008236: serine-type peptidase activity	8.18E-03
76	GO:0003747: translation release factor activity	8.35E-03
77	GO:0004575: sucrose alpha-glucosidase activity	9.38E-03
78	GO:0005381: iron ion transmembrane transporter activity	9.38E-03
79	GO:0005384: manganese ion transmembrane transporter activity	9.38E-03
80	GO:0016844: strictosidine synthase activity	9.38E-03
81	GO:0015112: nitrate transmembrane transporter activity	9.38E-03
82	GO:0044183: protein binding involved in protein folding	1.16E-02
83	GO:0004519: endonuclease activity	1.22E-02
84	GO:0030246: carbohydrate binding	1.28E-02
85	GO:0000049: tRNA binding	1.28E-02
86	GO:0004565: beta-galactosidase activity	1.40E-02
87	GO:0015095: magnesium ion transmembrane transporter activity	1.40E-02
88	GO:0016787: hydrolase activity	1.50E-02
89	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.52E-02
90	GO:0003774: motor activity	1.52E-02
91	GO:0051537: 2 iron, 2 sulfur cluster binding	1.53E-02
92	GO:0004601: peroxidase activity	1.83E-02
93	GO:0016788: hydrolase activity, acting on ester bonds	1.87E-02
94	GO:0033612: receptor serine/threonine kinase binding	2.20E-02
95	GO:0030570: pectate lyase activity	2.50E-02
96	GO:0003727: single-stranded RNA binding	2.65E-02
97	GO:0050662: coenzyme binding	3.30E-02
98	GO:0010181: FMN binding	3.30E-02
99	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.49E-02
100	GO:0009055: electron carrier activity	4.24E-02
101	GO:0016413: O-acetyltransferase activity	4.54E-02
102	GO:0003729: mRNA binding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009507: chloroplast	2.17E-67
3	GO:0009570: chloroplast stroma	1.24E-43
4	GO:0009941: chloroplast envelope	1.66E-33
5	GO:0009535: chloroplast thylakoid membrane	1.40E-28
6	GO:0009543: chloroplast thylakoid lumen	6.97E-16
7	GO:0009534: chloroplast thylakoid	5.53E-14
8	GO:0009579: thylakoid	7.18E-13
9	GO:0000311: plastid large ribosomal subunit	2.95E-08
10	GO:0010007: magnesium chelatase complex	4.96E-08
11	GO:0031977: thylakoid lumen	8.39E-08
12	GO:0005840: ribosome	3.87E-07
13	GO:0000312: plastid small ribosomal subunit	3.34E-06
14	GO:0031969: chloroplast membrane	6.70E-06
15	GO:0009706: chloroplast inner membrane	1.64E-05
16	GO:0009536: plastid	1.39E-04
17	GO:0034707: chloride channel complex	1.80E-04
18	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.60E-04
19	GO:0000428: DNA-directed RNA polymerase complex	3.60E-04
20	GO:0009344: nitrite reductase complex [NAD(P)H]	3.60E-04
21	GO:0009547: plastid ribosome	3.60E-04
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.82E-04
23	GO:0009295: nucleoid	7.57E-04
24	GO:0080085: signal recognition particle, chloroplast targeting	7.83E-04
25	GO:0033281: TAT protein transport complex	1.27E-03
26	GO:0030095: chloroplast photosystem II	1.34E-03
27	GO:0015934: large ribosomal subunit	1.46E-03
28	GO:0005775: vacuolar lumen	1.83E-03
29	GO:0009654: photosystem II oxygen evolving complex	2.05E-03
30	GO:0016020: membrane	3.80E-03
31	GO:0019898: extrinsic component of membrane	4.25E-03
32	GO:0005762: mitochondrial large ribosomal subunit	4.67E-03
33	GO:0009533: chloroplast stromal thylakoid	5.52E-03
34	GO:0030529: intracellular ribonucleoprotein complex	6.58E-03
35	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.36E-03
36	GO:0005763: mitochondrial small ribosomal subunit	8.35E-03
37	GO:0016459: myosin complex	1.05E-02
38	GO:0043231: intracellular membrane-bounded organelle	1.25E-02
39	GO:0032040: small-subunit processome	1.28E-02
40	GO:0019013: viral nucleocapsid	1.40E-02
41	GO:0009508: plastid chromosome	1.40E-02
42	GO:0022627: cytosolic small ribosomal subunit	1.50E-02
43	GO:0015935: small ribosomal subunit	2.20E-02
44	GO:0009532: plastid stroma	2.20E-02
45	GO:0022625: cytosolic large ribosomal subunit	2.55E-02
46	GO:0009523: photosystem II	3.47E-02
47	GO:0009505: plant-type cell wall	3.75E-02
48	GO:0005759: mitochondrial matrix	4.26E-02
49	GO:0010319: stromule	4.35E-02