Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G28050

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019323: pentose catabolic process0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:2000121: regulation of removal of superoxide radicals0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0046322: negative regulation of fatty acid oxidation0.00E+00
8GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
9GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
10GO:0042493: response to drug0.00E+00
11GO:1905499: trichome papilla formation0.00E+00
12GO:0009828: plant-type cell wall loosening2.73E-09
13GO:0009831: plant-type cell wall modification involved in multidimensional cell growth9.02E-09
14GO:0009664: plant-type cell wall organization2.14E-07
15GO:0006949: syncytium formation8.31E-07
16GO:0009826: unidimensional cell growth2.16E-06
17GO:0010027: thylakoid membrane organization4.99E-06
18GO:1902326: positive regulation of chlorophyll biosynthetic process5.43E-06
19GO:0015995: chlorophyll biosynthetic process7.64E-06
20GO:0007017: microtubule-based process7.85E-06
21GO:0015979: photosynthesis8.86E-06
22GO:0071555: cell wall organization1.06E-05
23GO:0009735: response to cytokinin1.69E-05
24GO:0090391: granum assembly1.92E-05
25GO:0042254: ribosome biogenesis2.62E-05
26GO:0009052: pentose-phosphate shunt, non-oxidative branch4.24E-05
27GO:0006633: fatty acid biosynthetic process4.80E-05
28GO:0009765: photosynthesis, light harvesting7.53E-05
29GO:0010207: photosystem II assembly9.14E-05
30GO:0010411: xyloglucan metabolic process1.16E-04
31GO:0031365: N-terminal protein amino acid modification1.18E-04
32GO:0005975: carbohydrate metabolic process2.33E-04
33GO:0010196: nonphotochemical quenching2.99E-04
34GO:0006106: fumarate metabolic process3.47E-04
35GO:0043686: co-translational protein modification3.47E-04
36GO:1902458: positive regulation of stomatal opening3.47E-04
37GO:0034337: RNA folding3.47E-04
38GO:0060627: regulation of vesicle-mediated transport3.47E-04
39GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process3.47E-04
40GO:0006176: dATP biosynthetic process from ADP3.47E-04
41GO:0005980: glycogen catabolic process3.47E-04
42GO:0000032: cell wall mannoprotein biosynthetic process3.47E-04
43GO:0044262: cellular carbohydrate metabolic process3.47E-04
44GO:0032025: response to cobalt ion3.47E-04
45GO:0042371: vitamin K biosynthetic process3.47E-04
46GO:0006412: translation5.10E-04
47GO:0071258: cellular response to gravity7.56E-04
48GO:1903426: regulation of reactive oxygen species biosynthetic process7.56E-04
49GO:0019388: galactose catabolic process7.56E-04
50GO:0042776: mitochondrial ATP synthesis coupled proton transport7.56E-04
51GO:0009658: chloroplast organization8.82E-04
52GO:0042128: nitrate assimilation9.40E-04
53GO:0006006: glucose metabolic process1.13E-03
54GO:0033591: response to L-ascorbic acid1.22E-03
55GO:0046168: glycerol-3-phosphate catabolic process1.22E-03
56GO:1901562: response to paraquat1.22E-03
57GO:0045493: xylan catabolic process1.22E-03
58GO:0009413: response to flooding1.76E-03
59GO:0009298: GDP-mannose biosynthetic process1.76E-03
60GO:0006072: glycerol-3-phosphate metabolic process1.76E-03
61GO:0009650: UV protection1.76E-03
62GO:0010306: rhamnogalacturonan II biosynthetic process1.76E-03
63GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.76E-03
64GO:0010731: protein glutathionylation1.76E-03
65GO:0006424: glutamyl-tRNA aminoacylation1.76E-03
66GO:0009590: detection of gravity1.76E-03
67GO:0050482: arachidonic acid secretion1.76E-03
68GO:0006869: lipid transport2.07E-03
69GO:0042546: cell wall biogenesis2.23E-03
70GO:0010109: regulation of photosynthesis2.37E-03
71GO:0006085: acetyl-CoA biosynthetic process2.37E-03
72GO:0006183: GTP biosynthetic process2.37E-03
73GO:0044206: UMP salvage2.37E-03
74GO:0016123: xanthophyll biosynthetic process3.03E-03
75GO:0006665: sphingolipid metabolic process3.03E-03
76GO:0034052: positive regulation of plant-type hypersensitive response3.03E-03
77GO:0016120: carotene biosynthetic process3.03E-03
78GO:0032543: mitochondrial translation3.03E-03
79GO:0043097: pyrimidine nucleoside salvage3.03E-03
80GO:0010236: plastoquinone biosynthetic process3.03E-03
81GO:0045038: protein import into chloroplast thylakoid membrane3.03E-03
82GO:0042335: cuticle development3.24E-03
83GO:0000413: protein peptidyl-prolyl isomerization3.24E-03
84GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.74E-03
85GO:0010190: cytochrome b6f complex assembly3.74E-03
86GO:0006206: pyrimidine nucleobase metabolic process3.74E-03
87GO:0006014: D-ribose metabolic process3.74E-03
88GO:0015986: ATP synthesis coupled proton transport3.75E-03
89GO:0019252: starch biosynthetic process4.02E-03
90GO:0010019: chloroplast-nucleus signaling pathway4.50E-03
91GO:0010555: response to mannitol4.50E-03
92GO:0042372: phylloquinone biosynthetic process4.50E-03
93GO:0009612: response to mechanical stimulus4.50E-03
94GO:1901259: chloroplast rRNA processing4.50E-03
95GO:0010583: response to cyclopentenone4.60E-03
96GO:0009772: photosynthetic electron transport in photosystem II5.32E-03
97GO:0009645: response to low light intensity stimulus5.32E-03
98GO:0006400: tRNA modification5.32E-03
99GO:0006644: phospholipid metabolic process6.17E-03
100GO:0048564: photosystem I assembly6.17E-03
101GO:0005978: glycogen biosynthetic process6.17E-03
102GO:0009819: drought recovery6.17E-03
103GO:0009642: response to light intensity6.17E-03
104GO:0043068: positive regulation of programmed cell death6.17E-03
105GO:0006353: DNA-templated transcription, termination6.17E-03
106GO:2000070: regulation of response to water deprivation6.17E-03
107GO:0017004: cytochrome complex assembly7.08E-03
108GO:0009932: cell tip growth7.08E-03
109GO:0015996: chlorophyll catabolic process7.08E-03
110GO:0007186: G-protein coupled receptor signaling pathway7.08E-03
111GO:0032544: plastid translation7.08E-03
112GO:0006783: heme biosynthetic process8.04E-03
113GO:0006754: ATP biosynthetic process8.04E-03
114GO:0018298: protein-chromophore linkage8.14E-03
115GO:0042761: very long-chain fatty acid biosynthetic process9.03E-03
116GO:0016042: lipid catabolic process9.47E-03
117GO:0043069: negative regulation of programmed cell death1.01E-02
118GO:0006782: protoporphyrinogen IX biosynthetic process1.01E-02
119GO:0016051: carbohydrate biosynthetic process1.03E-02
120GO:0010015: root morphogenesis1.12E-02
121GO:0006415: translational termination1.12E-02
122GO:0030001: metal ion transport1.18E-02
123GO:0045037: protein import into chloroplast stroma1.23E-02
124GO:0006108: malate metabolic process1.34E-02
125GO:0009409: response to cold1.43E-02
126GO:0009266: response to temperature stimulus1.46E-02
127GO:0010020: chloroplast fission1.46E-02
128GO:0019253: reductive pentose-phosphate cycle1.46E-02
129GO:0009969: xyloglucan biosynthetic process1.59E-02
130GO:0010167: response to nitrate1.59E-02
131GO:0042538: hyperosmotic salinity response1.68E-02
132GO:0006833: water transport1.71E-02
133GO:0010025: wax biosynthetic process1.71E-02
134GO:0006486: protein glycosylation1.81E-02
135GO:0019344: cysteine biosynthetic process1.85E-02
136GO:0009116: nucleoside metabolic process1.85E-02
137GO:0000027: ribosomal large subunit assembly1.85E-02
138GO:0051017: actin filament bundle assembly1.85E-02
139GO:0045333: cellular respiration1.85E-02
140GO:0019953: sexual reproduction1.98E-02
141GO:0048511: rhythmic process2.12E-02
142GO:0010431: seed maturation2.12E-02
143GO:0016998: cell wall macromolecule catabolic process2.12E-02
144GO:0055114: oxidation-reduction process2.19E-02
145GO:0080167: response to karrikin2.24E-02
146GO:0031348: negative regulation of defense response2.26E-02
147GO:0030245: cellulose catabolic process2.26E-02
148GO:0009814: defense response, incompatible interaction2.26E-02
149GO:0006012: galactose metabolic process2.40E-02
150GO:0009411: response to UV2.40E-02
151GO:0010091: trichome branching2.55E-02
152GO:0019722: calcium-mediated signaling2.55E-02
153GO:0009624: response to nematode2.57E-02
154GO:0016117: carotenoid biosynthetic process2.70E-02
155GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.70E-02
156GO:0045454: cell redox homeostasis2.80E-02
157GO:0015991: ATP hydrolysis coupled proton transport2.85E-02
158GO:0000226: microtubule cytoskeleton organization2.85E-02
159GO:0080022: primary root development2.85E-02
160GO:0034220: ion transmembrane transport2.85E-02
161GO:0010182: sugar mediated signaling pathway3.01E-02
162GO:0048868: pollen tube development3.01E-02
163GO:0042752: regulation of circadian rhythm3.17E-02
164GO:0009737: response to abscisic acid3.35E-02
165GO:0000302: response to reactive oxygen species3.50E-02
166GO:0006629: lipid metabolic process3.63E-02
167GO:0032502: developmental process3.67E-02
168GO:0007267: cell-cell signaling4.19E-02
169GO:0009627: systemic acquired resistance4.91E-02
170GO:0009739: response to gibberellin4.95E-02
RankGO TermAdjusted P value
1GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
2GO:0015252: hydrogen ion channel activity0.00E+00
3GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
4GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
5GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
6GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
7GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
8GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
9GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
10GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
11GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
12GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
13GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
14GO:0045435: lycopene epsilon cyclase activity0.00E+00
15GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
16GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
17GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
18GO:0019843: rRNA binding3.10E-10
19GO:0003735: structural constituent of ribosome4.16E-05
20GO:0016851: magnesium chelatase activity4.24E-05
21GO:0005200: structural constituent of cytoskeleton6.91E-05
22GO:0043495: protein anchor7.53E-05
23GO:0051920: peroxiredoxin activity2.30E-04
24GO:0019899: enzyme binding2.99E-04
25GO:0004333: fumarate hydratase activity3.47E-04
26GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.47E-04
27GO:0004560: alpha-L-fucosidase activity3.47E-04
28GO:0008184: glycogen phosphorylase activity3.47E-04
29GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.47E-04
30GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity3.47E-04
31GO:0080132: fatty acid alpha-hydroxylase activity3.47E-04
32GO:0004645: phosphorylase activity3.47E-04
33GO:0004476: mannose-6-phosphate isomerase activity3.47E-04
34GO:0009374: biotin binding3.47E-04
35GO:0004853: uroporphyrinogen decarboxylase activity3.47E-04
36GO:0042586: peptide deformylase activity3.47E-04
37GO:0052689: carboxylic ester hydrolase activity3.51E-04
38GO:0016209: antioxidant activity3.76E-04
39GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.90E-04
40GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.12E-04
41GO:0016762: xyloglucan:xyloglucosyl transferase activity5.13E-04
42GO:0003938: IMP dehydrogenase activity7.56E-04
43GO:0004750: ribulose-phosphate 3-epimerase activity7.56E-04
44GO:0016630: protochlorophyllide reductase activity7.56E-04
45GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.56E-04
46GO:0004614: phosphoglucomutase activity7.56E-04
47GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.56E-04
48GO:0016798: hydrolase activity, acting on glycosyl bonds1.00E-03
49GO:0008378: galactosyltransferase activity1.00E-03
50GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.01E-03
51GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.22E-03
52GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.22E-03
53GO:0008289: lipid binding1.22E-03
54GO:0004148: dihydrolipoyl dehydrogenase activity1.22E-03
55GO:0004751: ribose-5-phosphate isomerase activity1.22E-03
56GO:0045174: glutathione dehydrogenase (ascorbate) activity1.22E-03
57GO:0003878: ATP citrate synthase activity1.76E-03
58GO:0005528: FK506 binding1.76E-03
59GO:0016149: translation release factor activity, codon specific1.76E-03
60GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.76E-03
61GO:0004659: prenyltransferase activity2.37E-03
62GO:0004845: uracil phosphoribosyltransferase activity2.37E-03
63GO:1990137: plant seed peroxidase activity2.37E-03
64GO:0052793: pectin acetylesterase activity2.37E-03
65GO:0009044: xylan 1,4-beta-xylosidase activity2.37E-03
66GO:0046556: alpha-L-arabinofuranosidase activity2.37E-03
67GO:0022891: substrate-specific transmembrane transporter activity2.54E-03
68GO:0003924: GTPase activity2.55E-03
69GO:0003989: acetyl-CoA carboxylase activity3.03E-03
70GO:0009922: fatty acid elongase activity3.03E-03
71GO:0004623: phospholipase A2 activity3.03E-03
72GO:0004130: cytochrome-c peroxidase activity3.74E-03
73GO:0016788: hydrolase activity, acting on ester bonds4.06E-03
74GO:0004650: polygalacturonase activity4.34E-03
75GO:0051753: mannan synthase activity4.50E-03
76GO:0004849: uridine kinase activity4.50E-03
77GO:0004747: ribokinase activity4.50E-03
78GO:0005525: GTP binding5.30E-03
79GO:0008235: metalloexopeptidase activity5.32E-03
80GO:0016722: oxidoreductase activity, oxidizing metal ions5.55E-03
81GO:0004034: aldose 1-epimerase activity6.17E-03
82GO:0052747: sinapyl alcohol dehydrogenase activity6.17E-03
83GO:0008865: fructokinase activity6.17E-03
84GO:0016168: chlorophyll binding6.59E-03
85GO:0005509: calcium ion binding6.79E-03
86GO:0015078: hydrogen ion transmembrane transporter activity7.08E-03
87GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism8.04E-03
88GO:0003747: translation release factor activity8.04E-03
89GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors8.04E-03
90GO:0015020: glucuronosyltransferase activity1.01E-02
91GO:0004177: aminopeptidase activity1.12E-02
92GO:0047372: acylglycerol lipase activity1.12E-02
93GO:0051539: 4 iron, 4 sulfur cluster binding1.18E-02
94GO:0045551: cinnamyl-alcohol dehydrogenase activity1.23E-02
95GO:0004364: glutathione transferase activity1.28E-02
96GO:0042802: identical protein binding1.33E-02
97GO:0016491: oxidoreductase activity1.36E-02
98GO:0051287: NAD binding1.62E-02
99GO:0004601: peroxidase activity1.70E-02
100GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.71E-02
101GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.71E-02
102GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.71E-02
103GO:0008810: cellulase activity2.40E-02
104GO:0016853: isomerase activity3.17E-02
105GO:0019901: protein kinase binding3.33E-02
106GO:0051015: actin filament binding3.84E-02
107GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.14E-02
108GO:0008237: metallopeptidase activity4.19E-02
109GO:0015250: water channel activity4.55E-02
110GO:0008375: acetylglucosaminyltransferase activity4.91E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0009507: chloroplast6.08E-35
4GO:0009570: chloroplast stroma3.13E-32
5GO:0009535: chloroplast thylakoid membrane5.58E-23
6GO:0009941: chloroplast envelope1.60E-19
7GO:0009534: chloroplast thylakoid4.35E-19
8GO:0009579: thylakoid1.26E-16
9GO:0009543: chloroplast thylakoid lumen4.78E-16
10GO:0005618: cell wall1.49E-14
11GO:0031977: thylakoid lumen5.02E-14
12GO:0048046: apoplast5.08E-14
13GO:0009505: plant-type cell wall1.49E-09
14GO:0016020: membrane1.59E-08
15GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)2.73E-06
16GO:0005576: extracellular region4.28E-06
17GO:0009654: photosystem II oxygen evolving complex7.85E-06
18GO:0010007: magnesium chelatase complex1.92E-05
19GO:0045298: tubulin complex2.25E-05
20GO:0019898: extrinsic component of membrane3.69E-05
21GO:0005840: ribosome6.66E-05
22GO:0010319: stromule6.91E-05
23GO:0031225: anchored component of membrane1.07E-04
24GO:0046658: anchored component of plasma membrane1.22E-04
25GO:0009707: chloroplast outer membrane1.40E-04
26GO:0042651: thylakoid membrane1.73E-04
27GO:0045239: tricarboxylic acid cycle enzyme complex3.47E-04
28GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.47E-04
29GO:0009923: fatty acid elongase complex3.47E-04
30GO:0045259: proton-transporting ATP synthase complex7.56E-04
31GO:0000311: plastid large ribosomal subunit1.00E-03
32GO:0005874: microtubule1.20E-03
33GO:0009528: plastid inner membrane1.22E-03
34GO:0009317: acetyl-CoA carboxylase complex1.22E-03
35GO:0005875: microtubule associated complex1.59E-03
36GO:0015630: microtubule cytoskeleton1.76E-03
37GO:0009331: glycerol-3-phosphate dehydrogenase complex1.76E-03
38GO:0009346: citrate lyase complex1.76E-03
39GO:0009532: plastid stroma2.13E-03
40GO:0009527: plastid outer membrane2.37E-03
41GO:0009544: chloroplast ATP synthase complex2.37E-03
42GO:0009523: photosystem II4.02E-03
43GO:0009533: chloroplast stromal thylakoid5.32E-03
44GO:0005811: lipid particle7.08E-03
45GO:0032040: small-subunit processome1.23E-02
46GO:0030095: chloroplast photosystem II1.46E-02
47GO:0005886: plasma membrane1.88E-02
48GO:0009506: plasmodesma2.09E-02
49GO:0015935: small ribosomal subunit2.12E-02
50GO:0031969: chloroplast membrane2.24E-02
51GO:0031410: cytoplasmic vesicle2.26E-02
52GO:0015629: actin cytoskeleton2.40E-02
53GO:0009536: plastid3.30E-02
<
Gene type



Gene DE type