co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G27830

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043462: regulation of ATPase activity	0.00E+00
2	GO:0048227: plasma membrane to endosome transport	0.00E+00
3	GO:0032780: negative regulation of ATPase activity	0.00E+00
4	GO:0006482: protein demethylation	0.00E+00
5	GO:0006858: extracellular transport	0.00E+00
6	GO:0006098: pentose-phosphate shunt	3.56E-05
7	GO:0048455: stamen formation	5.48E-05
8	GO:0080173: male-female gamete recognition during double fertilization	5.48E-05
9	GO:0019374: galactolipid metabolic process	1.34E-04
10	GO:0097054: L-glutamate biosynthetic process	1.34E-04
11	GO:0009156: ribonucleoside monophosphate biosynthetic process	1.34E-04
12	GO:0051788: response to misfolded protein	1.34E-04
13	GO:0031648: protein destabilization	1.34E-04
14	GO:1902000: homogentisate catabolic process	1.34E-04
15	GO:0019521: D-gluconate metabolic process	1.34E-04
16	GO:0009410: response to xenobiotic stimulus	2.28E-04
17	GO:0048586: regulation of long-day photoperiodism, flowering	2.28E-04
18	GO:0009072: aromatic amino acid family metabolic process	2.28E-04
19	GO:0001676: long-chain fatty acid metabolic process	3.33E-04
20	GO:0045017: glycerolipid biosynthetic process	3.33E-04
21	GO:0006537: glutamate biosynthetic process	3.33E-04
22	GO:0009165: nucleotide biosynthetic process	4.45E-04
23	GO:0019676: ammonia assimilation cycle	4.45E-04
24	GO:0010363: regulation of plant-type hypersensitive response	4.45E-04
25	GO:0055114: oxidation-reduction process	6.63E-04
26	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	6.92E-04
27	GO:0043248: proteasome assembly	6.92E-04
28	GO:0006574: valine catabolic process	6.92E-04
29	GO:0010043: response to zinc ion	7.69E-04
30	GO:0009094: L-phenylalanine biosynthetic process	8.25E-04
31	GO:0048280: vesicle fusion with Golgi apparatus	8.25E-04
32	GO:0006401: RNA catabolic process	9.62E-04
33	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	9.62E-04
34	GO:0048528: post-embryonic root development	9.62E-04
35	GO:0051707: response to other organism	1.07E-03
36	GO:0006644: phospholipid metabolic process	1.11E-03
37	GO:0009061: anaerobic respiration	1.11E-03
38	GO:0000373: Group II intron splicing	1.41E-03
39	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.41E-03
40	GO:0009408: response to heat	1.41E-03
41	GO:0016571: histone methylation	1.58E-03
42	GO:0006896: Golgi to vacuole transport	1.75E-03
43	GO:0009651: response to salt stress	2.14E-03
44	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	2.30E-03
45	GO:0009863: salicylic acid mediated signaling pathway	3.11E-03
46	GO:0009116: nucleoside metabolic process	3.11E-03
47	GO:0031348: negative regulation of defense response	3.77E-03
48	GO:0009814: defense response, incompatible interaction	3.77E-03
49	GO:0019722: calcium-mediated signaling	4.23E-03
50	GO:0006511: ubiquitin-dependent protein catabolic process	4.30E-03
51	GO:0042147: retrograde transport, endosome to Golgi	4.47E-03
52	GO:0010118: stomatal movement	4.71E-03
53	GO:0006623: protein targeting to vacuole	5.48E-03
54	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	5.74E-03
55	GO:0010193: response to ozone	5.74E-03
56	GO:0006891: intra-Golgi vesicle-mediated transport	5.74E-03
57	GO:0009630: gravitropism	6.00E-03
58	GO:0007264: small GTPase mediated signal transduction	6.00E-03
59	GO:0030163: protein catabolic process	6.27E-03
60	GO:0006914: autophagy	6.55E-03
61	GO:0006464: cellular protein modification process	6.55E-03
62	GO:0009911: positive regulation of flower development	7.40E-03
63	GO:0010029: regulation of seed germination	7.69E-03
64	GO:0006974: cellular response to DNA damage stimulus	7.99E-03
65	GO:0048573: photoperiodism, flowering	8.29E-03
66	GO:0006950: response to stress	8.29E-03
67	GO:0006888: ER to Golgi vesicle-mediated transport	8.29E-03
68	GO:0048767: root hair elongation	9.22E-03
69	GO:0009407: toxin catabolic process	9.54E-03
70	GO:0015031: protein transport	9.66E-03
71	GO:0008152: metabolic process	1.06E-02
72	GO:0006099: tricarboxylic acid cycle	1.09E-02
73	GO:0006897: endocytosis	1.19E-02
74	GO:0006631: fatty acid metabolic process	1.19E-02
75	GO:0009744: response to sucrose	1.26E-02
76	GO:0000209: protein polyubiquitination	1.29E-02
77	GO:0006855: drug transmembrane transport	1.40E-02
78	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.44E-02
79	GO:0009846: pollen germination	1.48E-02
80	GO:0042538: hyperosmotic salinity response	1.48E-02
81	GO:0009809: lignin biosynthetic process	1.55E-02
82	GO:0051603: proteolysis involved in cellular protein catabolic process	1.59E-02
83	GO:0009624: response to nematode	1.99E-02
84	GO:0055085: transmembrane transport	2.18E-02
85	GO:0016310: phosphorylation	2.22E-02
86	GO:0009790: embryo development	2.61E-02
87	GO:0040008: regulation of growth	2.85E-02
88	GO:0010150: leaf senescence	2.94E-02
89	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.19E-02
90	GO:0007166: cell surface receptor signaling pathway	3.24E-02
91	GO:0010468: regulation of gene expression	3.34E-02
92	GO:0009658: chloroplast organization	4.01E-02
93	GO:0009860: pollen tube growth	4.23E-02
94	GO:0007049: cell cycle	4.34E-02
95	GO:0048366: leaf development	4.51E-02
96	GO:0080167: response to karrikin	4.68E-02
97	GO:0046777: protein autophosphorylation	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0051723: protein methylesterase activity	0.00E+00
2	GO:0042030: ATPase inhibitor activity	0.00E+00
3	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
4	GO:0015930: glutamate synthase activity	0.00E+00
5	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.21E-05
6	GO:0016041: glutamate synthase (ferredoxin) activity	5.48E-05
7	GO:0008517: folic acid transporter activity	1.34E-04
8	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	1.34E-04
9	GO:0015036: disulfide oxidoreductase activity	1.34E-04
10	GO:0005093: Rab GDP-dissociation inhibitor activity	2.28E-04
11	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	2.28E-04
12	GO:0004749: ribose phosphate diphosphokinase activity	3.33E-04
13	GO:0008276: protein methyltransferase activity	3.33E-04
14	GO:0001653: peptide receptor activity	3.33E-04
15	GO:0047769: arogenate dehydratase activity	4.45E-04
16	GO:0004664: prephenate dehydratase activity	4.45E-04
17	GO:0051538: 3 iron, 4 sulfur cluster binding	5.66E-04
18	GO:0000104: succinate dehydrogenase activity	5.66E-04
19	GO:0008177: succinate dehydrogenase (ubiquinone) activity	5.66E-04
20	GO:0031593: polyubiquitin binding	6.92E-04
21	GO:0102391: decanoate--CoA ligase activity	8.25E-04
22	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	8.25E-04
23	GO:0004144: diacylglycerol O-acyltransferase activity	8.25E-04
24	GO:0004620: phospholipase activity	9.62E-04
25	GO:0004467: long-chain fatty acid-CoA ligase activity	9.62E-04
26	GO:0004143: diacylglycerol kinase activity	9.62E-04
27	GO:0102425: myricetin 3-O-glucosyltransferase activity	9.62E-04
28	GO:0102360: daphnetin 3-O-glucosyltransferase activity	9.62E-04
29	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.11E-03
30	GO:0052747: sinapyl alcohol dehydrogenase activity	1.11E-03
31	GO:0003951: NAD+ kinase activity	1.26E-03
32	GO:0003678: DNA helicase activity	1.41E-03
33	GO:0047617: acyl-CoA hydrolase activity	1.58E-03
34	GO:0045309: protein phosphorylated amino acid binding	1.58E-03
35	GO:0005524: ATP binding	1.73E-03
36	GO:0008171: O-methyltransferase activity	1.75E-03
37	GO:0008559: xenobiotic-transporting ATPase activity	1.93E-03
38	GO:0019904: protein domain specific binding	1.93E-03
39	GO:0016491: oxidoreductase activity	2.09E-03
40	GO:0045551: cinnamyl-alcohol dehydrogenase activity	2.11E-03
41	GO:0031072: heat shock protein binding	2.30E-03
42	GO:0031624: ubiquitin conjugating enzyme binding	2.49E-03
43	GO:0043424: protein histidine kinase binding	3.32E-03
44	GO:0004298: threonine-type endopeptidase activity	3.54E-03
45	GO:0035251: UDP-glucosyltransferase activity	3.54E-03
46	GO:0008194: UDP-glycosyltransferase activity	3.83E-03
47	GO:0005515: protein binding	4.23E-03
48	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.34E-03
49	GO:0042802: identical protein binding	4.34E-03
50	GO:0004872: receptor activity	5.48E-03
51	GO:0004518: nuclease activity	6.00E-03
52	GO:0050660: flavin adenine dinucleotide binding	6.10E-03
53	GO:0016597: amino acid binding	7.11E-03
54	GO:0005096: GTPase activator activity	9.22E-03
55	GO:0008270: zinc ion binding	9.80E-03
56	GO:0050897: cobalt ion binding	9.86E-03
57	GO:0009055: electron carrier activity	1.04E-02
58	GO:0000149: SNARE binding	1.12E-02
59	GO:0004364: glutathione transferase activity	1.22E-02
60	GO:0005484: SNAP receptor activity	1.26E-02
61	GO:0051287: NAD binding	1.44E-02
62	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.87E-02
63	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.87E-02
64	GO:0016787: hydrolase activity	1.87E-02
65	GO:0051082: unfolded protein binding	1.99E-02
66	GO:0016758: transferase activity, transferring hexosyl groups	2.29E-02
67	GO:0005215: transporter activity	3.85E-02
68	GO:0008168: methyltransferase activity	3.91E-02
69	GO:0000287: magnesium ion binding	3.96E-02
70	GO:0004601: peroxidase activity	4.01E-02
71	GO:0008233: peptidase activity	4.62E-02
72	GO:0061630: ubiquitin protein ligase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0031314: extrinsic component of mitochondrial inner membrane	1.34E-04
3	GO:0005829: cytosol	1.96E-04
4	GO:0005776: autophagosome	4.45E-04
5	GO:0030140: trans-Golgi network transport vesicle	6.92E-04
6	GO:0000325: plant-type vacuole	7.69E-04
7	GO:0005737: cytoplasm	9.93E-04
8	GO:0012507: ER to Golgi transport vesicle membrane	1.11E-03
9	GO:0045273: respiratory chain complex II	1.11E-03
10	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.11E-03
11	GO:0000502: proteasome complex	1.42E-03
12	GO:0005635: nuclear envelope	1.52E-03
13	GO:0008540: proteasome regulatory particle, base subcomplex	1.58E-03
14	GO:0005777: peroxisome	3.47E-03
15	GO:0005839: proteasome core complex	3.54E-03
16	GO:0031410: cytoplasmic vesicle	3.77E-03
17	GO:0005773: vacuole	4.78E-03
18	GO:0005770: late endosome	4.96E-03
19	GO:0005783: endoplasmic reticulum	7.71E-03
20	GO:0000151: ubiquitin ligase complex	8.91E-03
21	GO:0005774: vacuolar membrane	9.05E-03
22	GO:0005618: cell wall	1.11E-02
23	GO:0005819: spindle	1.12E-02
24	GO:0031902: late endosome membrane	1.19E-02
25	GO:0031201: SNARE complex	1.19E-02
26	GO:0005730: nucleolus	1.39E-02
27	GO:0009506: plasmodesma	2.31E-02
28	GO:0009570: chloroplast stroma	2.36E-02
29	GO:0009524: phragmoplast	2.43E-02
30	GO:0005802: trans-Golgi network	2.76E-02
31	GO:0005794: Golgi apparatus	3.83E-02
32	GO:0009536: plastid	4.26E-02
33	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.29E-02