Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G26520

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0090706: specification of plant organ position0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:0061635: regulation of protein complex stability0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0000372: Group I intron splicing0.00E+00
8GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
9GO:0090042: tubulin deacetylation0.00E+00
10GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
11GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
12GO:0009773: photosynthetic electron transport in photosystem I6.65E-08
13GO:0006000: fructose metabolic process1.13E-07
14GO:0032544: plastid translation7.22E-07
15GO:0042549: photosystem II stabilization6.57E-06
16GO:0015979: photosynthesis6.90E-06
17GO:0030388: fructose 1,6-bisphosphate metabolic process1.04E-05
18GO:0010275: NAD(P)H dehydrogenase complex assembly1.04E-05
19GO:0006002: fructose 6-phosphate metabolic process3.69E-05
20GO:0010206: photosystem II repair5.02E-05
21GO:0048507: meristem development5.02E-05
22GO:0080170: hydrogen peroxide transmembrane transport7.62E-05
23GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly7.62E-05
24GO:0015994: chlorophyll metabolic process1.32E-04
25GO:0006546: glycine catabolic process1.32E-04
26GO:0006094: gluconeogenesis1.59E-04
27GO:0010207: photosystem II assembly1.89E-04
28GO:0015995: chlorophyll biosynthetic process2.76E-04
29GO:0006810: transport3.30E-04
30GO:0034337: RNA folding4.87E-04
31GO:0010450: inflorescence meristem growth4.87E-04
32GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.87E-04
33GO:0015969: guanosine tetraphosphate metabolic process4.87E-04
34GO:0000476: maturation of 4.5S rRNA4.87E-04
35GO:0000967: rRNA 5'-end processing4.87E-04
36GO:0043266: regulation of potassium ion transport4.87E-04
37GO:0071370: cellular response to gibberellin stimulus4.87E-04
38GO:0010480: microsporocyte differentiation4.87E-04
39GO:0031338: regulation of vesicle fusion4.87E-04
40GO:0000481: maturation of 5S rRNA4.87E-04
41GO:0042547: cell wall modification involved in multidimensional cell growth4.87E-04
42GO:2000021: regulation of ion homeostasis4.87E-04
43GO:0043609: regulation of carbon utilization4.87E-04
44GO:0010028: xanthophyll cycle4.87E-04
45GO:0009772: photosynthetic electron transport in photosystem II4.95E-04
46GO:0008152: metabolic process5.91E-04
47GO:0000373: Group II intron splicing8.99E-04
48GO:0010270: photosystem II oxygen evolving complex assembly1.05E-03
49GO:0034470: ncRNA processing1.05E-03
50GO:0055129: L-proline biosynthetic process1.05E-03
51GO:0035304: regulation of protein dephosphorylation1.05E-03
52GO:1900871: chloroplast mRNA modification1.05E-03
53GO:0034755: iron ion transmembrane transport1.05E-03
54GO:0016122: xanthophyll metabolic process1.05E-03
55GO:0010205: photoinhibition1.06E-03
56GO:0019684: photosynthesis, light reaction1.42E-03
57GO:0006518: peptide metabolic process1.71E-03
58GO:0006013: mannose metabolic process1.71E-03
59GO:0043617: cellular response to sucrose starvation1.71E-03
60GO:0045493: xylan catabolic process1.71E-03
61GO:0090630: activation of GTPase activity1.71E-03
62GO:2001295: malonyl-CoA biosynthetic process1.71E-03
63GO:0045165: cell fate commitment1.71E-03
64GO:0009767: photosynthetic electron transport chain1.85E-03
65GO:0005986: sucrose biosynthetic process1.85E-03
66GO:0019253: reductive pentose-phosphate cycle2.09E-03
67GO:0005985: sucrose metabolic process2.34E-03
68GO:0009226: nucleotide-sugar biosynthetic process2.48E-03
69GO:0055070: copper ion homeostasis2.48E-03
70GO:1902476: chloride transmembrane transport2.48E-03
71GO:0019464: glycine decarboxylation via glycine cleavage system3.34E-03
72GO:0045727: positive regulation of translation3.34E-03
73GO:0030104: water homeostasis3.34E-03
74GO:1902183: regulation of shoot apical meristem development4.28E-03
75GO:0010438: cellular response to sulfur starvation4.28E-03
76GO:0010158: abaxial cell fate specification4.28E-03
77GO:0016120: carotene biosynthetic process4.28E-03
78GO:0045038: protein import into chloroplast thylakoid membrane4.28E-03
79GO:0035434: copper ion transmembrane transport4.28E-03
80GO:0006461: protein complex assembly4.28E-03
81GO:0007623: circadian rhythm4.40E-03
82GO:0009735: response to cytokinin4.56E-03
83GO:0010256: endomembrane system organization5.30E-03
84GO:0000470: maturation of LSU-rRNA5.30E-03
85GO:0006828: manganese ion transport5.30E-03
86GO:0032973: amino acid export5.30E-03
87GO:0018258: protein O-linked glycosylation via hydroxyproline5.30E-03
88GO:0000741: karyogamy5.30E-03
89GO:0009759: indole glucosinolate biosynthetic process5.30E-03
90GO:0006561: proline biosynthetic process5.30E-03
91GO:0010405: arabinogalactan protein metabolic process5.30E-03
92GO:0006751: glutathione catabolic process5.30E-03
93GO:0034220: ion transmembrane transport5.37E-03
94GO:0010305: leaf vascular tissue pattern formation5.79E-03
95GO:0006364: rRNA processing5.92E-03
96GO:0006629: lipid metabolic process6.23E-03
97GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.40E-03
98GO:0009942: longitudinal axis specification6.40E-03
99GO:0043090: amino acid import7.57E-03
100GO:0006821: chloride transport7.57E-03
101GO:0048437: floral organ development7.57E-03
102GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.57E-03
103GO:0010196: nonphotochemical quenching7.57E-03
104GO:0009645: response to low light intensity stimulus7.57E-03
105GO:0051510: regulation of unidimensional cell growth7.57E-03
106GO:0009658: chloroplast organization8.56E-03
107GO:0006605: protein targeting8.81E-03
108GO:0032508: DNA duplex unwinding8.81E-03
109GO:0010492: maintenance of shoot apical meristem identity8.81E-03
110GO:0009657: plastid organization1.01E-02
111GO:0010093: specification of floral organ identity1.01E-02
112GO:0009051: pentose-phosphate shunt, oxidative branch1.15E-02
113GO:0009821: alkaloid biosynthetic process1.15E-02
114GO:0090305: nucleic acid phosphodiester bond hydrolysis1.15E-02
115GO:0080144: amino acid homeostasis1.15E-02
116GO:2000024: regulation of leaf development1.15E-02
117GO:0042128: nitrate assimilation1.16E-02
118GO:0006779: porphyrin-containing compound biosynthetic process1.29E-02
119GO:1900865: chloroplast RNA modification1.29E-02
120GO:0006412: translation1.35E-02
121GO:0009817: defense response to fungus, incompatible interaction1.36E-02
122GO:0018298: protein-chromophore linkage1.36E-02
123GO:0055062: phosphate ion homeostasis1.45E-02
124GO:0006782: protoporphyrinogen IX biosynthetic process1.45E-02
125GO:0009790: embryo development1.51E-02
126GO:0006816: calcium ion transport1.60E-02
127GO:0009698: phenylpropanoid metabolic process1.60E-02
128GO:0009089: lysine biosynthetic process via diaminopimelate1.60E-02
129GO:0006879: cellular iron ion homeostasis1.60E-02
130GO:0009750: response to fructose1.60E-02
131GO:0018119: peptidyl-cysteine S-nitrosylation1.60E-02
132GO:0048229: gametophyte development1.60E-02
133GO:0009737: response to abscisic acid1.62E-02
134GO:0015706: nitrate transport1.76E-02
135GO:0005983: starch catabolic process1.76E-02
136GO:0002213: defense response to insect1.76E-02
137GO:0005975: carbohydrate metabolic process1.90E-02
138GO:0010102: lateral root morphogenesis1.93E-02
139GO:0006006: glucose metabolic process1.93E-02
140GO:0018107: peptidyl-threonine phosphorylation1.93E-02
141GO:0009718: anthocyanin-containing compound biosynthetic process1.93E-02
142GO:0010075: regulation of meristem growth1.93E-02
143GO:0030001: metal ion transport1.97E-02
144GO:0046686: response to cadmium ion2.00E-02
145GO:0009934: regulation of meristem structural organization2.11E-02
146GO:0048768: root hair cell tip growth2.11E-02
147GO:0010143: cutin biosynthetic process2.11E-02
148GO:0009933: meristem structural organization2.11E-02
149GO:0010167: response to nitrate2.28E-02
150GO:0010030: positive regulation of seed germination2.28E-02
151GO:0009644: response to high light intensity2.42E-02
152GO:0000162: tryptophan biosynthetic process2.47E-02
153GO:0006636: unsaturated fatty acid biosynthetic process2.47E-02
154GO:0006833: water transport2.47E-02
155GO:0009944: polarity specification of adaxial/abaxial axis2.66E-02
156GO:0042538: hyperosmotic salinity response2.81E-02
157GO:0016575: histone deacetylation2.85E-02
158GO:0006418: tRNA aminoacylation for protein translation2.85E-02
159GO:0009768: photosynthesis, light harvesting in photosystem I2.85E-02
160GO:0061077: chaperone-mediated protein folding3.05E-02
161GO:0051603: proteolysis involved in cellular protein catabolic process3.12E-02
162GO:0009814: defense response, incompatible interaction3.25E-02
163GO:0080092: regulation of pollen tube growth3.25E-02
164GO:0042254: ribosome biogenesis3.31E-02
165GO:0006096: glycolytic process3.56E-02
166GO:0006508: proteolysis3.65E-02
167GO:0009409: response to cold3.73E-02
168GO:0009723: response to ethylene3.87E-02
169GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.89E-02
170GO:0048653: anther development4.11E-02
171GO:0042631: cellular response to water deprivation4.11E-02
172GO:0080022: primary root development4.11E-02
173GO:0000413: protein peptidyl-prolyl isomerization4.11E-02
174GO:0010051: xylem and phloem pattern formation4.11E-02
175GO:0055114: oxidation-reduction process4.27E-02
176GO:0009741: response to brassinosteroid4.33E-02
177GO:0010154: fruit development4.33E-02
178GO:0010197: polar nucleus fusion4.33E-02
179GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.39E-02
180GO:0009793: embryo development ending in seed dormancy4.45E-02
181GO:0009646: response to absence of light4.56E-02
182GO:0009791: post-embryonic development4.80E-02
183GO:0009416: response to light stimulus4.92E-02
RankGO TermAdjusted P value
1GO:0050281: serine-glyoxylate transaminase activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
4GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
5GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
6GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
7GO:0046422: violaxanthin de-epoxidase activity0.00E+00
8GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
9GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
10GO:0051721: protein phosphatase 2A binding0.00E+00
11GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
12GO:0043014: alpha-tubulin binding0.00E+00
13GO:0042903: tubulin deacetylase activity0.00E+00
14GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
15GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
16GO:0004822: isoleucine-tRNA ligase activity0.00E+00
17GO:0004760: serine-pyruvate transaminase activity0.00E+00
18GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
19GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
20GO:0005528: FK506 binding2.11E-10
21GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.33E-09
22GO:0019843: rRNA binding6.33E-08
23GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.04E-05
24GO:0016787: hydrolase activity1.29E-04
25GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.32E-04
26GO:0008266: poly(U) RNA binding1.89E-04
27GO:0050139: nicotinate-N-glucosyltransferase activity4.87E-04
28GO:0004856: xylulokinase activity4.87E-04
29GO:0004349: glutamate 5-kinase activity4.87E-04
30GO:0004350: glutamate-5-semialdehyde dehydrogenase activity4.87E-04
31GO:0010242: oxygen evolving activity4.87E-04
32GO:0003867: 4-aminobutyrate transaminase activity4.87E-04
33GO:0009671: nitrate:proton symporter activity4.87E-04
34GO:0045485: omega-6 fatty acid desaturase activity4.87E-04
35GO:0004033: aldo-keto reductase (NADP) activity6.17E-04
36GO:0004047: aminomethyltransferase activity1.05E-03
37GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.05E-03
38GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.05E-03
39GO:0008728: GTP diphosphokinase activity1.05E-03
40GO:0047746: chlorophyllase activity1.05E-03
41GO:0016868: intramolecular transferase activity, phosphotransferases1.05E-03
42GO:0004618: phosphoglycerate kinase activity1.05E-03
43GO:0003839: gamma-glutamylcyclotransferase activity1.05E-03
44GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity1.71E-03
45GO:0004180: carboxypeptidase activity1.71E-03
46GO:0016531: copper chaperone activity1.71E-03
47GO:0019829: cation-transporting ATPase activity1.71E-03
48GO:0050734: hydroxycinnamoyltransferase activity1.71E-03
49GO:0002161: aminoacyl-tRNA editing activity1.71E-03
50GO:0004148: dihydrolipoyl dehydrogenase activity1.71E-03
51GO:0004075: biotin carboxylase activity1.71E-03
52GO:0030267: glyoxylate reductase (NADP) activity1.71E-03
53GO:0016805: dipeptidase activity1.71E-03
54GO:0008081: phosphoric diester hydrolase activity1.85E-03
55GO:0003735: structural constituent of ribosome2.19E-03
56GO:0004375: glycine dehydrogenase (decarboxylating) activity2.48E-03
57GO:0019201: nucleotide kinase activity2.48E-03
58GO:0048487: beta-tubulin binding2.48E-03
59GO:0016851: magnesium chelatase activity2.48E-03
60GO:0043023: ribosomal large subunit binding2.48E-03
61GO:0004345: glucose-6-phosphate dehydrogenase activity3.34E-03
62GO:0008453: alanine-glyoxylate transaminase activity3.34E-03
63GO:0009044: xylan 1,4-beta-xylosidase activity3.34E-03
64GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity3.34E-03
65GO:0005253: anion channel activity3.34E-03
66GO:0046556: alpha-L-arabinofuranosidase activity3.34E-03
67GO:0004185: serine-type carboxypeptidase activity4.05E-03
68GO:0030570: pectate lyase activity4.21E-03
69GO:0008374: O-acyltransferase activity4.28E-03
70GO:0016773: phosphotransferase activity, alcohol group as acceptor4.28E-03
71GO:0017137: Rab GTPase binding4.28E-03
72GO:0003989: acetyl-CoA carboxylase activity4.28E-03
73GO:2001070: starch binding5.30E-03
74GO:1990714: hydroxyproline O-galactosyltransferase activity5.30E-03
75GO:0004332: fructose-bisphosphate aldolase activity5.30E-03
76GO:0004130: cytochrome-c peroxidase activity5.30E-03
77GO:0042578: phosphoric ester hydrolase activity5.30E-03
78GO:0005247: voltage-gated chloride channel activity5.30E-03
79GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.40E-03
80GO:0004017: adenylate kinase activity6.40E-03
81GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.40E-03
82GO:0004559: alpha-mannosidase activity6.40E-03
83GO:0048038: quinone binding7.16E-03
84GO:0043022: ribosome binding8.81E-03
85GO:0004564: beta-fructofuranosidase activity8.81E-03
86GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.01E-02
87GO:0005375: copper ion transmembrane transporter activity1.01E-02
88GO:0015250: water channel activity1.04E-02
89GO:0016168: chlorophyll binding1.10E-02
90GO:0004575: sucrose alpha-glucosidase activity1.29E-02
91GO:0005381: iron ion transmembrane transporter activity1.29E-02
92GO:0005384: manganese ion transmembrane transporter activity1.29E-02
93GO:0016844: strictosidine synthase activity1.29E-02
94GO:0008236: serine-type peptidase activity1.29E-02
95GO:0015112: nitrate transmembrane transporter activity1.29E-02
96GO:0016829: lyase activity1.37E-02
97GO:0004252: serine-type endopeptidase activity1.42E-02
98GO:0005096: GTPase activator activity1.43E-02
99GO:0005089: Rho guanyl-nucleotide exchange factor activity1.60E-02
100GO:0000049: tRNA binding1.76E-02
101GO:0005509: calcium ion binding1.83E-02
102GO:0004565: beta-galactosidase activity1.93E-02
103GO:0004022: alcohol dehydrogenase (NAD) activity1.93E-02
104GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.93E-02
105GO:0015095: magnesium ion transmembrane transporter activity1.93E-02
106GO:0031072: heat shock protein binding1.93E-02
107GO:0003723: RNA binding2.04E-02
108GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.11E-02
109GO:0008146: sulfotransferase activity2.28E-02
110GO:0051537: 2 iron, 2 sulfur cluster binding2.42E-02
111GO:0031409: pigment binding2.47E-02
112GO:0004407: histone deacetylase activity2.66E-02
113GO:0043424: protein histidine kinase binding2.85E-02
114GO:0015079: potassium ion transmembrane transporter activity2.85E-02
115GO:0046872: metal ion binding2.93E-02
116GO:0004176: ATP-dependent peptidase activity3.05E-02
117GO:0033612: receptor serine/threonine kinase binding3.05E-02
118GO:0016298: lipase activity3.12E-02
119GO:0022891: substrate-specific transmembrane transporter activity3.46E-02
120GO:0016491: oxidoreductase activity3.55E-02
121GO:0003756: protein disulfide isomerase activity3.67E-02
122GO:0004812: aminoacyl-tRNA ligase activity3.89E-02
123GO:0050662: coenzyme binding4.56E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0009507: chloroplast7.84E-54
4GO:0009534: chloroplast thylakoid8.64E-31
5GO:0009535: chloroplast thylakoid membrane1.88E-27
6GO:0009570: chloroplast stroma2.37E-26
7GO:0009543: chloroplast thylakoid lumen1.67E-20
8GO:0009941: chloroplast envelope4.35E-19
9GO:0009579: thylakoid1.51E-14
10GO:0031977: thylakoid lumen2.67E-11
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.49E-08
12GO:0030095: chloroplast photosystem II2.15E-07
13GO:0009533: chloroplast stromal thylakoid1.77E-05
14GO:0009654: photosystem II oxygen evolving complex2.22E-05
15GO:0019898: extrinsic component of membrane9.54E-05
16GO:0009782: photosystem I antenna complex4.87E-04
17GO:0043674: columella4.87E-04
18GO:0009344: nitrite reductase complex [NAD(P)H]4.87E-04
19GO:0009547: plastid ribosome4.87E-04
20GO:0009523: photosystem II8.87E-04
21GO:0005840: ribosome1.08E-03
22GO:0000311: plastid large ribosomal subunit1.63E-03
23GO:0010007: magnesium chelatase complex1.71E-03
24GO:0048046: apoplast2.07E-03
25GO:0000312: plastid small ribosomal subunit2.09E-03
26GO:0010287: plastoglobule2.47E-03
27GO:0009531: secondary cell wall2.48E-03
28GO:0005775: vacuolar lumen2.48E-03
29GO:0005960: glycine cleavage complex2.48E-03
30GO:0031969: chloroplast membrane3.14E-03
31GO:0042651: thylakoid membrane3.20E-03
32GO:0009705: plant-type vacuole membrane4.40E-03
33GO:0034707: chloride channel complex5.30E-03
34GO:0042807: central vacuole7.57E-03
35GO:0010319: stromule9.24E-03
36GO:0005786: signal recognition particle, endoplasmic reticulum targeting1.01E-02
37GO:0030529: intracellular ribonucleoprotein complex1.04E-02
38GO:0042644: chloroplast nucleoid1.15E-02
39GO:0009505: plant-type cell wall1.27E-02
40GO:0005773: vacuole1.42E-02
41GO:0016324: apical plasma membrane1.45E-02
42GO:0015934: large ribosomal subunit1.58E-02
43GO:0032040: small-subunit processome1.76E-02
44GO:0009508: plastid chromosome1.93E-02
45GO:0030076: light-harvesting complex2.28E-02
46GO:0046658: anchored component of plasma membrane2.66E-02
47GO:0009532: plastid stroma3.05E-02
48GO:0009536: plastid3.12E-02
49GO:0009706: chloroplast inner membrane4.28E-02
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Gene type



Gene DE type