Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G25960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015822: ornithine transport0.00E+00
2GO:0090706: specification of plant organ position0.00E+00
3GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
4GO:0000066: mitochondrial ornithine transport1.04E-05
5GO:0010450: inflorescence meristem growth1.04E-05
6GO:0016119: carotene metabolic process1.04E-05
7GO:0045165: cell fate commitment5.03E-05
8GO:1902183: regulation of shoot apical meristem development1.40E-04
9GO:0016123: xanthophyll biosynthetic process1.40E-04
10GO:0010158: abaxial cell fate specification1.40E-04
11GO:0043097: pyrimidine nucleoside salvage1.40E-04
12GO:0006206: pyrimidine nucleobase metabolic process1.74E-04
13GO:1900056: negative regulation of leaf senescence2.50E-04
14GO:0034968: histone lysine methylation2.90E-04
15GO:0010093: specification of floral organ identity3.32E-04
16GO:0010100: negative regulation of photomorphogenesis3.32E-04
17GO:0000373: Group II intron splicing3.74E-04
18GO:2000024: regulation of leaf development3.74E-04
19GO:0010380: regulation of chlorophyll biosynthetic process4.18E-04
20GO:0016571: histone methylation4.18E-04
21GO:0009641: shade avoidance4.63E-04
22GO:0018119: peptidyl-cysteine S-nitrosylation5.09E-04
23GO:0046856: phosphatidylinositol dephosphorylation5.09E-04
24GO:0010223: secondary shoot formation6.53E-04
25GO:0009933: meristem structural organization6.53E-04
26GO:0019253: reductive pentose-phosphate cycle6.53E-04
27GO:0010207: photosystem II assembly6.53E-04
28GO:0009658: chloroplast organization7.05E-04
29GO:2000377: regulation of reactive oxygen species metabolic process8.05E-04
30GO:0009944: polarity specification of adaxial/abaxial axis8.05E-04
31GO:0071472: cellular response to salt stress1.25E-03
32GO:0010154: fruit development1.25E-03
33GO:0010305: leaf vascular tissue pattern formation1.25E-03
34GO:0006629: lipid metabolic process1.25E-03
35GO:0006811: ion transport2.33E-03
36GO:0009910: negative regulation of flower development2.41E-03
37GO:0045893: positive regulation of transcription, DNA-templated2.49E-03
38GO:0009853: photorespiration2.56E-03
39GO:0006839: mitochondrial transport2.80E-03
40GO:0009585: red, far-red light phototransduction3.72E-03
41GO:0009909: regulation of flower development3.98E-03
42GO:0009058: biosynthetic process5.72E-03
43GO:0006413: translational initiation6.56E-03
44GO:0046777: protein autophosphorylation1.14E-02
45GO:0006397: mRNA processing1.47E-02
46GO:0009735: response to cytokinin2.02E-02
47GO:0009416: response to light stimulus2.15E-02
48GO:0042742: defense response to bacterium3.56E-02
49GO:0015031: protein transport4.22E-02
50GO:0009409: response to cold4.42E-02
51GO:0006810: transport4.68E-02
RankGO TermAdjusted P value
1GO:0050281: serine-glyoxylate transaminase activity0.00E+00
2GO:0004760: serine-pyruvate transaminase activity0.00E+00
3GO:0008974: phosphoribulokinase activity0.00E+00
4GO:0010291: carotene beta-ring hydroxylase activity2.78E-05
5GO:0000064: L-ornithine transmembrane transporter activity2.78E-05
6GO:0010429: methyl-CpNpN binding5.03E-05
7GO:0010428: methyl-CpNpG binding5.03E-05
8GO:0008453: alanine-glyoxylate transaminase activity1.07E-04
9GO:0016787: hydrolase activity1.63E-04
10GO:0000293: ferric-chelate reductase activity1.74E-04
11GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity1.74E-04
12GO:0004849: uridine kinase activity2.11E-04
13GO:0000989: transcription factor activity, transcription factor binding3.74E-04
14GO:0008327: methyl-CpG binding5.09E-04
15GO:0019904: protein domain specific binding5.09E-04
16GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity5.55E-04
17GO:0008081: phosphoric diester hydrolase activity6.04E-04
18GO:0016491: oxidoreductase activity7.23E-04
19GO:0018024: histone-lysine N-methyltransferase activity1.13E-03
20GO:0004806: triglyceride lipase activity2.04E-03
21GO:0042393: histone binding2.80E-03
22GO:0008168: methyltransferase activity9.10E-03
23GO:0003700: transcription factor activity, sequence-specific DNA binding2.33E-02
24GO:0008270: zinc ion binding2.98E-02
25GO:0005506: iron ion binding3.52E-02
RankGO TermAdjusted P value
1GO:0009570: chloroplast stroma9.49E-04
2GO:0000775: chromosome, centromeric region9.65E-04
3GO:0010319: stromule1.70E-03
4GO:0030529: intracellular ribonucleoprotein complex1.83E-03
5GO:0031969: chloroplast membrane1.09E-02
6GO:0005743: mitochondrial inner membrane1.36E-02
7GO:0048046: apoplast1.59E-02
8GO:0009941: chloroplast envelope2.06E-02
9GO:0009507: chloroplast2.24E-02
10GO:0005777: peroxisome2.37E-02
11GO:0009579: thylakoid2.44E-02
12GO:0009536: plastid4.12E-02
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Gene type



Gene DE type