Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G25830

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
2GO:0071242: cellular response to ammonium ion0.00E+00
3GO:0006642: triglyceride mobilization0.00E+00
4GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:0046322: negative regulation of fatty acid oxidation0.00E+00
7GO:0042493: response to drug0.00E+00
8GO:1905499: trichome papilla formation0.00E+00
9GO:0071555: cell wall organization2.21E-07
10GO:0042546: cell wall biogenesis3.64E-07
11GO:0010411: xyloglucan metabolic process9.14E-07
12GO:0010207: photosystem II assembly6.22E-06
13GO:0006869: lipid transport4.56E-05
14GO:0042335: cuticle development4.65E-05
15GO:0015976: carbon utilization1.11E-04
16GO:0009828: plant-type cell wall loosening1.15E-04
17GO:0016123: xanthophyll biosynthetic process1.71E-04
18GO:0016998: cell wall macromolecule catabolic process3.15E-04
19GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.00E-04
20GO:0043007: maintenance of rDNA4.37E-04
21GO:1902458: positive regulation of stomatal opening4.37E-04
22GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway4.37E-04
23GO:0071588: hydrogen peroxide mediated signaling pathway4.37E-04
24GO:0060627: regulation of vesicle-mediated transport4.37E-04
25GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.37E-04
26GO:0006824: cobalt ion transport4.37E-04
27GO:0046166: glyceraldehyde-3-phosphate biosynthetic process4.37E-04
28GO:0080051: cutin transport4.37E-04
29GO:0006633: fatty acid biosynthetic process6.34E-04
30GO:0032544: plastid translation6.43E-04
31GO:0009664: plant-type cell wall organization7.83E-04
32GO:0071554: cell wall organization or biogenesis7.90E-04
33GO:1903426: regulation of reactive oxygen species biosynthetic process9.44E-04
34GO:0015824: proline transport9.44E-04
35GO:0010289: homogalacturonan biosynthetic process9.44E-04
36GO:0043039: tRNA aminoacylation9.44E-04
37GO:0010198: synergid death9.44E-04
38GO:0010115: regulation of abscisic acid biosynthetic process9.44E-04
39GO:0015908: fatty acid transport9.44E-04
40GO:0045717: negative regulation of fatty acid biosynthetic process9.44E-04
41GO:0034755: iron ion transmembrane transport9.44E-04
42GO:0006949: syncytium formation1.06E-03
43GO:0009773: photosynthetic electron transport in photosystem I1.21E-03
44GO:0010027: thylakoid membrane organization1.25E-03
45GO:0009826: unidimensional cell growth1.51E-03
46GO:0032504: multicellular organism reproduction1.54E-03
47GO:0090506: axillary shoot meristem initiation1.54E-03
48GO:0046168: glycerol-3-phosphate catabolic process1.54E-03
49GO:0019563: glycerol catabolic process1.54E-03
50GO:1901562: response to paraquat1.54E-03
51GO:0009658: chloroplast organization1.61E-03
52GO:0009413: response to flooding2.22E-03
53GO:0010371: regulation of gibberellin biosynthetic process2.22E-03
54GO:0007231: osmosensory signaling pathway2.22E-03
55GO:0051639: actin filament network formation2.22E-03
56GO:0009152: purine ribonucleotide biosynthetic process2.22E-03
57GO:0046653: tetrahydrofolate metabolic process2.22E-03
58GO:0009052: pentose-phosphate shunt, non-oxidative branch2.22E-03
59GO:0009650: UV protection2.22E-03
60GO:0010306: rhamnogalacturonan II biosynthetic process2.22E-03
61GO:0006072: glycerol-3-phosphate metabolic process2.22E-03
62GO:0051016: barbed-end actin filament capping2.22E-03
63GO:0010731: protein glutathionylation2.22E-03
64GO:0050482: arachidonic acid secretion2.22E-03
65GO:0010025: wax biosynthetic process2.23E-03
66GO:0016051: carbohydrate biosynthetic process2.38E-03
67GO:0010222: stem vascular tissue pattern formation2.99E-03
68GO:0051764: actin crosslink formation2.99E-03
69GO:0009765: photosynthesis, light harvesting2.99E-03
70GO:0006183: GTP biosynthetic process2.99E-03
71GO:2000122: negative regulation of stomatal complex development2.99E-03
72GO:0033500: carbohydrate homeostasis2.99E-03
73GO:0031122: cytoplasmic microtubule organization2.99E-03
74GO:0000919: cell plate assembly2.99E-03
75GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.99E-03
76GO:0010037: response to carbon dioxide2.99E-03
77GO:0006665: sphingolipid metabolic process3.83E-03
78GO:0006465: signal peptide processing3.83E-03
79GO:0016120: carotene biosynthetic process3.83E-03
80GO:0045487: gibberellin catabolic process3.83E-03
81GO:0045038: protein import into chloroplast thylakoid membrane3.83E-03
82GO:0019722: calcium-mediated signaling3.89E-03
83GO:0016117: carotenoid biosynthetic process4.22E-03
84GO:0016042: lipid catabolic process4.45E-03
85GO:0080022: primary root development4.56E-03
86GO:0000413: protein peptidyl-prolyl isomerization4.56E-03
87GO:0010405: arabinogalactan protein metabolic process4.74E-03
88GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.74E-03
89GO:0006655: phosphatidylglycerol biosynthetic process4.74E-03
90GO:0006796: phosphate-containing compound metabolic process4.74E-03
91GO:0010190: cytochrome b6f complex assembly4.74E-03
92GO:0018258: protein O-linked glycosylation via hydroxyproline4.74E-03
93GO:0006014: D-ribose metabolic process4.74E-03
94GO:0006561: proline biosynthetic process4.74E-03
95GO:0010182: sugar mediated signaling pathway4.92E-03
96GO:0005975: carbohydrate metabolic process5.05E-03
97GO:0010019: chloroplast-nucleus signaling pathway5.72E-03
98GO:0010555: response to mannitol5.72E-03
99GO:0010067: procambium histogenesis5.72E-03
100GO:0009612: response to mechanical stimulus5.72E-03
101GO:0009554: megasporogenesis5.72E-03
102GO:0010583: response to cyclopentenone6.50E-03
103GO:0006955: immune response6.76E-03
104GO:0009395: phospholipid catabolic process6.76E-03
105GO:0010047: fruit dehiscence6.76E-03
106GO:0071669: plant-type cell wall organization or biogenesis6.76E-03
107GO:0009645: response to low light intensity stimulus6.76E-03
108GO:0007267: cell-cell signaling7.84E-03
109GO:0006644: phospholipid metabolic process7.86E-03
110GO:0009642: response to light intensity7.86E-03
111GO:0009704: de-etiolation7.86E-03
112GO:2000070: regulation of response to water deprivation7.86E-03
113GO:0045010: actin nucleation7.86E-03
114GO:0016126: sterol biosynthetic process8.82E-03
115GO:0015996: chlorophyll catabolic process9.03E-03
116GO:0007186: G-protein coupled receptor signaling pathway9.03E-03
117GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway9.76E-03
118GO:0042128: nitrate assimilation9.86E-03
119GO:0010206: photosystem II repair1.03E-02
120GO:0006783: heme biosynthetic process1.03E-02
121GO:0006754: ATP biosynthetic process1.03E-02
122GO:0015995: chlorophyll biosynthetic process1.04E-02
123GO:0006779: porphyrin-containing compound biosynthetic process1.15E-02
124GO:0042761: very long-chain fatty acid biosynthetic process1.15E-02
125GO:0006782: protoporphyrinogen IX biosynthetic process1.29E-02
126GO:0019538: protein metabolic process1.29E-02
127GO:0009870: defense response signaling pathway, resistance gene-dependent1.29E-02
128GO:0009688: abscisic acid biosynthetic process1.29E-02
129GO:0030148: sphingolipid biosynthetic process1.43E-02
130GO:0000038: very long-chain fatty acid metabolic process1.43E-02
131GO:0006816: calcium ion transport1.43E-02
132GO:0006415: translational termination1.43E-02
133GO:0009750: response to fructose1.43E-02
134GO:0016024: CDP-diacylglycerol biosynthetic process1.57E-02
135GO:0045037: protein import into chloroplast stroma1.57E-02
136GO:0006629: lipid metabolic process1.67E-02
137GO:0030036: actin cytoskeleton organization1.72E-02
138GO:0050826: response to freezing1.72E-02
139GO:0006094: gluconeogenesis1.72E-02
140GO:0010588: cotyledon vascular tissue pattern formation1.72E-02
141GO:0010628: positive regulation of gene expression1.72E-02
142GO:0010020: chloroplast fission1.87E-02
143GO:0019253: reductive pentose-phosphate cycle1.87E-02
144GO:0010223: secondary shoot formation1.87E-02
145GO:0009969: xyloglucan biosynthetic process2.03E-02
146GO:0010167: response to nitrate2.03E-02
147GO:0071732: cellular response to nitric oxide2.03E-02
148GO:0070588: calcium ion transmembrane transport2.03E-02
149GO:0006833: water transport2.20E-02
150GO:0019344: cysteine biosynthetic process2.36E-02
151GO:0051017: actin filament bundle assembly2.36E-02
152GO:0042538: hyperosmotic salinity response2.38E-02
153GO:0019953: sexual reproduction2.54E-02
154GO:0006418: tRNA aminoacylation for protein translation2.54E-02
155GO:0007017: microtubule-based process2.54E-02
156GO:0042254: ribosome biogenesis2.70E-02
157GO:0010431: seed maturation2.71E-02
158GO:0030245: cellulose catabolic process2.89E-02
159GO:0016226: iron-sulfur cluster assembly2.89E-02
160GO:0006096: glycolytic process3.02E-02
161GO:0009411: response to UV3.08E-02
162GO:0071369: cellular response to ethylene stimulus3.08E-02
163GO:0001944: vasculature development3.08E-02
164GO:0010089: xylem development3.27E-02
165GO:0010091: trichome branching3.27E-02
166GO:0009306: protein secretion3.27E-02
167GO:0010087: phloem or xylem histogenesis3.66E-02
168GO:0000271: polysaccharide biosynthetic process3.66E-02
169GO:0034220: ion transmembrane transport3.66E-02
170GO:0048868: pollen tube development3.86E-02
171GO:0009414: response to water deprivation4.02E-02
172GO:0015979: photosynthesis4.06E-02
173GO:0019252: starch biosynthetic process4.27E-02
174GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.48E-02
175GO:0000302: response to reactive oxygen species4.48E-02
176GO:0007264: small GTPase mediated signal transduction4.69E-02
177GO:0071281: cellular response to iron ion4.91E-02
RankGO TermAdjusted P value
1GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
2GO:0052751: GDP-mannose hydrolase activity0.00E+00
3GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
4GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
5GO:0004496: mevalonate kinase activity0.00E+00
6GO:0010301: xanthoxin dehydrogenase activity0.00E+00
7GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
8GO:0050613: delta14-sterol reductase activity0.00E+00
9GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
10GO:0045435: lycopene epsilon cyclase activity0.00E+00
11GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
12GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
13GO:0016762: xyloglucan:xyloglucosyl transferase activity1.62E-07
14GO:0016798: hydrolase activity, acting on glycosyl bonds9.14E-07
15GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.48E-06
16GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity6.33E-05
17GO:0016788: hydrolase activity, acting on ester bonds7.12E-05
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.97E-05
19GO:0052793: pectin acetylesterase activity1.11E-04
20GO:0052689: carboxylic ester hydrolase activity1.58E-04
21GO:0005528: FK506 binding2.41E-04
22GO:0051753: mannan synthase activity3.27E-04
23GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity4.37E-04
24GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.37E-04
25GO:0005227: calcium activated cation channel activity4.37E-04
26GO:0004807: triose-phosphate isomerase activity4.37E-04
27GO:0042834: peptidoglycan binding4.37E-04
28GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.37E-04
29GO:0008568: microtubule-severing ATPase activity4.37E-04
30GO:0004831: tyrosine-tRNA ligase activity4.37E-04
31GO:0047560: 3-dehydrosphinganine reductase activity4.37E-04
32GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.37E-04
33GO:0015245: fatty acid transporter activity4.37E-04
34GO:0004328: formamidase activity4.37E-04
35GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds6.72E-04
36GO:0008289: lipid binding6.91E-04
37GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.70E-04
38GO:0008883: glutamyl-tRNA reductase activity9.44E-04
39GO:0003938: IMP dehydrogenase activity9.44E-04
40GO:0016413: O-acetyltransferase activity1.17E-03
41GO:0008378: galactosyltransferase activity1.39E-03
42GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.54E-03
43GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.54E-03
44GO:0008864: formyltetrahydrofolate deformylase activity1.54E-03
45GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.54E-03
46GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.54E-03
47GO:0005504: fatty acid binding1.54E-03
48GO:0004148: dihydrolipoyl dehydrogenase activity1.54E-03
49GO:0015193: L-proline transmembrane transporter activity1.54E-03
50GO:0004751: ribose-5-phosphate isomerase activity1.54E-03
51GO:0045174: glutathione dehydrogenase (ascorbate) activity1.54E-03
52GO:0030267: glyoxylate reductase (NADP) activity1.54E-03
53GO:0004089: carbonate dehydratase activity1.58E-03
54GO:0019843: rRNA binding2.09E-03
55GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.22E-03
56GO:0016149: translation release factor activity, codon specific2.22E-03
57GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.22E-03
58GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.22E-03
59GO:0016851: magnesium chelatase activity2.22E-03
60GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.23E-03
61GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.23E-03
62GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.23E-03
63GO:0004857: enzyme inhibitor activity2.47E-03
64GO:0016836: hydro-lyase activity2.99E-03
65GO:0004045: aminoacyl-tRNA hydrolase activity2.99E-03
66GO:0045430: chalcone isomerase activity2.99E-03
67GO:0046527: glucosyltransferase activity2.99E-03
68GO:0009922: fatty acid elongase activity3.83E-03
69GO:0004623: phospholipase A2 activity3.83E-03
70GO:0008200: ion channel inhibitor activity4.74E-03
71GO:0080030: methyl indole-3-acetate esterase activity4.74E-03
72GO:1990714: hydroxyproline O-galactosyltransferase activity4.74E-03
73GO:0004130: cytochrome-c peroxidase activity4.74E-03
74GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.74E-03
75GO:0016688: L-ascorbate peroxidase activity4.74E-03
76GO:0051920: peroxiredoxin activity5.72E-03
77GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.72E-03
78GO:0004747: ribokinase activity5.72E-03
79GO:0004427: inorganic diphosphatase activity6.76E-03
80GO:0043295: glutathione binding6.76E-03
81GO:0051015: actin filament binding6.93E-03
82GO:0004714: transmembrane receptor protein tyrosine kinase activity7.86E-03
83GO:0016209: antioxidant activity7.86E-03
84GO:0052747: sinapyl alcohol dehydrogenase activity7.86E-03
85GO:0008865: fructokinase activity7.86E-03
86GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism1.03E-02
87GO:0003747: translation release factor activity1.03E-02
88GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.04E-02
89GO:0008236: serine-type peptidase activity1.10E-02
90GO:0005381: iron ion transmembrane transporter activity1.15E-02
91GO:0047617: acyl-CoA hydrolase activity1.15E-02
92GO:0015020: glucuronosyltransferase activity1.29E-02
93GO:0004871: signal transducer activity1.31E-02
94GO:0047372: acylglycerol lipase activity1.43E-02
95GO:0003993: acid phosphatase activity1.53E-02
96GO:0045551: cinnamyl-alcohol dehydrogenase activity1.57E-02
97GO:0003924: GTPase activity1.67E-02
98GO:0005262: calcium channel activity1.72E-02
99GO:0004565: beta-galactosidase activity1.72E-02
100GO:0004022: alcohol dehydrogenase (NAD) activity1.72E-02
101GO:0004364: glutathione transferase activity1.82E-02
102GO:0051536: iron-sulfur cluster binding2.36E-02
103GO:0033612: receptor serine/threonine kinase binding2.71E-02
104GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.89E-02
105GO:0016760: cellulose synthase (UDP-forming) activity3.08E-02
106GO:0030570: pectate lyase activity3.08E-02
107GO:0008810: cellulase activity3.08E-02
108GO:0030599: pectinesterase activity3.43E-02
109GO:0004812: aminoacyl-tRNA ligase activity3.46E-02
110GO:0005102: receptor binding3.46E-02
111GO:0003713: transcription coactivator activity3.86E-02
112GO:0019901: protein kinase binding4.27E-02
113GO:0016758: transferase activity, transferring hexosyl groups4.42E-02
RankGO TermAdjusted P value
1GO:0009543: chloroplast thylakoid lumen5.19E-15
2GO:0031977: thylakoid lumen8.62E-15
3GO:0009507: chloroplast1.34E-13
4GO:0009570: chloroplast stroma7.41E-13
5GO:0009535: chloroplast thylakoid membrane3.47E-09
6GO:0009579: thylakoid8.60E-09
7GO:0005618: cell wall9.57E-09
8GO:0048046: apoplast2.70E-08
9GO:0009534: chloroplast thylakoid8.29E-08
10GO:0031225: anchored component of membrane3.58E-07
11GO:0046658: anchored component of plasma membrane4.43E-07
12GO:0005886: plasma membrane9.91E-06
13GO:0005576: extracellular region2.25E-05
14GO:0009941: chloroplast envelope6.02E-05
15GO:0009505: plant-type cell wall3.76E-04
16GO:0005787: signal peptidase complex4.37E-04
17GO:0009923: fatty acid elongase complex4.37E-04
18GO:0016020: membrane4.82E-04
19GO:0009528: plastid inner membrane1.54E-03
20GO:0009897: external side of plasma membrane1.54E-03
21GO:0010007: magnesium chelatase complex1.54E-03
22GO:0005853: eukaryotic translation elongation factor 1 complex1.54E-03
23GO:0032432: actin filament bundle2.22E-03
24GO:0009331: glycerol-3-phosphate dehydrogenase complex2.22E-03
25GO:0009654: photosystem II oxygen evolving complex2.73E-03
26GO:0009527: plastid outer membrane2.99E-03
27GO:0009532: plastid stroma3.00E-03
28GO:0016021: integral component of membrane3.60E-03
29GO:0019898: extrinsic component of membrane5.68E-03
30GO:0009533: chloroplast stromal thylakoid6.76E-03
31GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.03E-02
32GO:0045298: tubulin complex1.03E-02
33GO:0000139: Golgi membrane1.06E-02
34GO:0005794: Golgi apparatus1.19E-02
35GO:0005884: actin filament1.43E-02
36GO:0000311: plastid large ribosomal subunit1.57E-02
37GO:0030095: chloroplast photosystem II1.87E-02
38GO:0030176: integral component of endoplasmic reticulum membrane2.03E-02
39GO:0043234: protein complex2.20E-02
40GO:0005875: microtubule associated complex2.20E-02
41GO:0042651: thylakoid membrane2.54E-02
42GO:0031410: cytoplasmic vesicle2.89E-02
43GO:0005874: microtubule3.30E-02
44GO:0031969: chloroplast membrane3.45E-02
45GO:0010287: plastoglobule4.31E-02
46GO:0005840: ribosome4.51E-02
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Gene type



Gene DE type