Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G25390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0036258: multivesicular body assembly0.00E+00
2GO:0016236: macroautophagy0.00E+00
3GO:1900151: regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay0.00E+00
4GO:1900103: positive regulation of endoplasmic reticulum unfolded protein response0.00E+00
5GO:1903798: regulation of production of miRNAs involved in gene silencing by miRNA0.00E+00
6GO:0070676: intralumenal vesicle formation2.44E-07
7GO:1900036: positive regulation of cellular response to heat1.77E-05
8GO:0060211: regulation of nuclear-transcribed mRNA poly(A) tail shortening1.77E-05
9GO:0031338: regulation of vesicle fusion1.77E-05
10GO:0071806: protein transmembrane transport1.77E-05
11GO:0030242: pexophagy1.77E-05
12GO:0090630: activation of GTPase activity8.18E-05
13GO:0043044: ATP-dependent chromatin remodeling8.18E-05
14GO:1901000: regulation of response to salt stress1.23E-04
15GO:0045324: late endosome to vacuole transport1.69E-04
16GO:0006751: glutathione catabolic process2.72E-04
17GO:0010199: organ boundary specification between lateral organs and the meristem3.27E-04
18GO:0015937: coenzyme A biosynthetic process3.84E-04
19GO:0010050: vegetative phase change3.84E-04
20GO:0040029: regulation of gene expression, epigenetic4.43E-04
21GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay5.68E-04
22GO:0006626: protein targeting to mitochondrion9.08E-04
23GO:0006829: zinc II ion transport9.08E-04
24GO:0007034: vacuolar transport9.82E-04
25GO:0006446: regulation of translational initiation9.82E-04
26GO:0046854: phosphatidylinositol phosphorylation1.06E-03
27GO:0030150: protein import into mitochondrial matrix1.21E-03
28GO:0003333: amino acid transmembrane transport1.37E-03
29GO:0009814: defense response, incompatible interaction1.46E-03
30GO:0015031: protein transport1.56E-03
31GO:0070417: cellular response to cold1.72E-03
32GO:0042147: retrograde transport, endosome to Golgi1.72E-03
33GO:0055072: iron ion homeostasis2.09E-03
34GO:0006623: protein targeting to vacuole2.09E-03
35GO:0016032: viral process2.29E-03
36GO:0016579: protein deubiquitination2.70E-03
37GO:0007275: multicellular organism development2.70E-03
38GO:0010043: response to zinc ion3.70E-03
39GO:0030001: metal ion transport4.31E-03
40GO:0008283: cell proliferation4.68E-03
41GO:0009846: pollen germination5.48E-03
42GO:0006417: regulation of translation6.17E-03
43GO:0048367: shoot system development6.60E-03
44GO:0016569: covalent chromatin modification7.04E-03
45GO:0009790: embryo development9.56E-03
46GO:0006413: translational initiation1.02E-02
47GO:0006470: protein dephosphorylation1.18E-02
48GO:0007166: cell surface receptor signaling pathway1.18E-02
49GO:0006468: protein phosphorylation1.53E-02
50GO:0048366: leaf development1.64E-02
51GO:0010200: response to chitin1.75E-02
52GO:0016192: vesicle-mediated transport1.77E-02
53GO:0046777: protein autophosphorylation1.79E-02
54GO:0006886: intracellular protein transport1.98E-02
55GO:0048364: root development2.32E-02
56GO:0016567: protein ubiquitination2.54E-02
57GO:0009651: response to salt stress2.80E-02
58GO:0009908: flower development3.15E-02
59GO:0009555: pollen development3.39E-02
60GO:0055085: transmembrane transport4.01E-02
61GO:0006511: ubiquitin-dependent protein catabolic process4.21E-02
RankGO TermAdjusted P value
1GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity0.00E+00
2GO:0004594: pantothenate kinase activity4.61E-05
3GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity1.23E-04
4GO:0017137: Rab GTPase binding2.19E-04
5GO:0004869: cysteine-type endopeptidase inhibitor activity4.43E-04
6GO:0015174: basic amino acid transmembrane transporter activity6.32E-04
7GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity6.99E-04
8GO:0015266: protein channel activity9.08E-04
9GO:0043130: ubiquitin binding1.21E-03
10GO:0008094: DNA-dependent ATPase activity1.37E-03
11GO:0019706: protein-cysteine S-palmitoyltransferase activity1.37E-03
12GO:0036459: thiol-dependent ubiquitinyl hydrolase activity1.37E-03
13GO:0005524: ATP binding1.54E-03
14GO:0004674: protein serine/threonine kinase activity1.68E-03
15GO:0046873: metal ion transmembrane transporter activity1.90E-03
16GO:0003729: mRNA binding1.90E-03
17GO:0004843: thiol-dependent ubiquitin-specific protease activity2.19E-03
18GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.36E-03
19GO:0005096: GTPase activator activity3.47E-03
20GO:0035091: phosphatidylinositol binding4.94E-03
21GO:0043621: protein self-association4.94E-03
22GO:0015171: amino acid transmembrane transporter activity6.17E-03
23GO:0004386: helicase activity7.79E-03
24GO:0003743: translation initiation factor activity1.20E-02
25GO:0003682: chromatin binding1.52E-02
26GO:0004722: protein serine/threonine phosphatase activity2.07E-02
27GO:0005515: protein binding2.62E-02
28GO:0030246: carbohydrate binding4.18E-02
29GO:0005516: calmodulin binding4.53E-02
RankGO TermAdjusted P value
1GO:0071561: nucleus-vacuole junction0.00E+00
2GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II1.77E-05
3GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I1.77E-05
4GO:0005770: late endosome6.25E-05
5GO:0000813: ESCRT I complex2.19E-04
6GO:0005771: multivesicular body2.72E-04
7GO:0000815: ESCRT III complex3.27E-04
8GO:0010008: endosome membrane4.39E-04
9GO:0031305: integral component of mitochondrial inner membrane4.43E-04
10GO:0005744: mitochondrial inner membrane presequence translocase complex1.63E-03
11GO:0005643: nuclear pore3.36E-03
12GO:0031902: late endosome membrane4.43E-03
13GO:0012505: endomembrane system7.19E-03
14GO:0009706: chloroplast inner membrane7.34E-03
15GO:0009705: plant-type vacuole membrane1.08E-02
16GO:0080008: Cul4-RING E3 ubiquitin ligase complex1.56E-02
17GO:0005743: mitochondrial inner membrane2.14E-02
18GO:0005829: cytosol2.38E-02
19GO:0005886: plasma membrane2.65E-02
20GO:0016021: integral component of membrane4.07E-02
21GO:0005773: vacuole4.42E-02
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Gene type



Gene DE type