co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
3	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
4	GO:0006223: uracil salvage	0.00E+00
5	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
6	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
7	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
8	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
9	GO:0015995: chlorophyll biosynthetic process	9.06E-20
10	GO:0015979: photosynthesis	1.42E-17
11	GO:0006412: translation	8.77E-12
12	GO:0090391: granum assembly	2.80E-08
13	GO:0009735: response to cytokinin	6.54E-08
14	GO:0010027: thylakoid membrane organization	8.31E-08
15	GO:0032544: plastid translation	1.29E-07
16	GO:0006783: heme biosynthetic process	2.07E-07
17	GO:0006782: protoporphyrinogen IX biosynthetic process	4.68E-07
18	GO:0009658: chloroplast organization	9.45E-07
19	GO:0042254: ribosome biogenesis	1.02E-06
20	GO:0010196: nonphotochemical quenching	4.86E-06
21	GO:0051085: chaperone mediated protein folding requiring cofactor	3.12E-05
22	GO:0010207: photosystem II assembly	6.23E-05
23	GO:1901259: chloroplast rRNA processing	1.76E-04
24	GO:0017148: negative regulation of translation	1.76E-04
25	GO:0009772: photosynthetic electron transport in photosystem II	2.30E-04
26	GO:0042255: ribosome assembly	2.91E-04
27	GO:0032365: intracellular lipid transport	2.92E-04
28	GO:0071277: cellular response to calcium ion	2.92E-04
29	GO:1904966: positive regulation of vitamin E biosynthetic process	2.92E-04
30	GO:0010442: guard cell morphogenesis	2.92E-04
31	GO:1904964: positive regulation of phytol biosynthetic process	2.92E-04
32	GO:0042371: vitamin K biosynthetic process	2.92E-04
33	GO:1902458: positive regulation of stomatal opening	2.92E-04
34	GO:0034337: RNA folding	2.92E-04
35	GO:0032502: developmental process	4.03E-04
36	GO:0042742: defense response to bacterium	4.32E-04
37	GO:0006779: porphyrin-containing compound biosynthetic process	5.10E-04
38	GO:0052541: plant-type cell wall cellulose metabolic process	6.40E-04
39	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.40E-04
40	GO:0080183: response to photooxidative stress	6.40E-04
41	GO:0006729: tetrahydrobiopterin biosynthetic process	6.40E-04
42	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.40E-04
43	GO:0006568: tryptophan metabolic process	6.40E-04
44	GO:0019253: reductive pentose-phosphate cycle	9.97E-04
45	GO:0015714: phosphoenolpyruvate transport	1.04E-03
46	GO:0071492: cellular response to UV-A	1.04E-03
47	GO:0006760: folic acid-containing compound metabolic process	1.04E-03
48	GO:0006636: unsaturated fatty acid biosynthetic process	1.24E-03
49	GO:0071484: cellular response to light intensity	1.48E-03
50	GO:0006241: CTP biosynthetic process	1.48E-03
51	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.48E-03
52	GO:0006165: nucleoside diphosphate phosphorylation	1.48E-03
53	GO:0033014: tetrapyrrole biosynthetic process	1.48E-03
54	GO:0006228: UTP biosynthetic process	1.48E-03
55	GO:0006986: response to unfolded protein	1.48E-03
56	GO:0055070: copper ion homeostasis	1.48E-03
57	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.48E-03
58	GO:0009411: response to UV	1.98E-03
59	GO:0071486: cellular response to high light intensity	1.99E-03
60	GO:0006183: GTP biosynthetic process	1.99E-03
61	GO:0015713: phosphoglycerate transport	1.99E-03
62	GO:0044206: UMP salvage	1.99E-03
63	GO:0046656: folic acid biosynthetic process	1.99E-03
64	GO:0006021: inositol biosynthetic process	1.99E-03
65	GO:0034052: positive regulation of plant-type hypersensitive response	2.54E-03
66	GO:0043097: pyrimidine nucleoside salvage	2.54E-03
67	GO:0032543: mitochondrial translation	2.54E-03
68	GO:0010236: plastoquinone biosynthetic process	2.54E-03
69	GO:0045038: protein import into chloroplast thylakoid membrane	2.54E-03
70	GO:0031365: N-terminal protein amino acid modification	2.54E-03
71	GO:0009409: response to cold	2.84E-03
72	GO:0006206: pyrimidine nucleobase metabolic process	3.14E-03
73	GO:0006796: phosphate-containing compound metabolic process	3.14E-03
74	GO:0010190: cytochrome b6f complex assembly	3.14E-03
75	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.14E-03
76	GO:0046855: inositol phosphate dephosphorylation	3.14E-03
77	GO:0080167: response to karrikin	3.70E-03
78	GO:0009955: adaxial/abaxial pattern specification	3.77E-03
79	GO:0042026: protein refolding	3.77E-03
80	GO:0042372: phylloquinone biosynthetic process	3.77E-03
81	GO:0046654: tetrahydrofolate biosynthetic process	3.77E-03
82	GO:0010189: vitamin E biosynthetic process	3.77E-03
83	GO:0009854: oxidative photosynthetic carbon pathway	3.77E-03
84	GO:0010555: response to mannitol	3.77E-03
85	GO:0006826: iron ion transport	4.45E-03
86	GO:0055114: oxidation-reduction process	4.49E-03
87	GO:0048564: photosystem I assembly	5.17E-03
88	GO:0009642: response to light intensity	5.17E-03
89	GO:0006353: DNA-templated transcription, termination	5.17E-03
90	GO:0043068: positive regulation of programmed cell death	5.17E-03
91	GO:0006605: protein targeting	5.17E-03
92	GO:0009704: de-etiolation	5.17E-03
93	GO:2000070: regulation of response to water deprivation	5.17E-03
94	GO:0009627: systemic acquired resistance	5.38E-03
95	GO:0009932: cell tip growth	5.92E-03
96	GO:0015996: chlorophyll catabolic process	5.92E-03
97	GO:0007186: G-protein coupled receptor signaling pathway	5.92E-03
98	GO:0009657: plastid organization	5.92E-03
99	GO:0010206: photosystem II repair	6.71E-03
100	GO:0090333: regulation of stomatal closure	6.71E-03
101	GO:0010205: photoinhibition	7.54E-03
102	GO:0006949: syncytium formation	8.40E-03
103	GO:0019538: protein metabolic process	8.40E-03
104	GO:0008380: RNA splicing	8.82E-03
105	GO:0009773: photosynthetic electron transport in photosystem I	9.30E-03
106	GO:0043085: positive regulation of catalytic activity	9.30E-03
107	GO:0018119: peptidyl-cysteine S-nitrosylation	9.30E-03
108	GO:0048765: root hair cell differentiation	9.30E-03
109	GO:0006790: sulfur compound metabolic process	1.02E-02
110	GO:0045037: protein import into chloroplast stroma	1.02E-02
111	GO:0009767: photosynthetic electron transport chain	1.12E-02
112	GO:0006006: glucose metabolic process	1.12E-02
113	GO:0009725: response to hormone	1.12E-02
114	GO:0046688: response to copper ion	1.32E-02
115	GO:0019853: L-ascorbic acid biosynthetic process	1.32E-02
116	GO:0010039: response to iron ion	1.32E-02
117	GO:0046854: phosphatidylinositol phosphorylation	1.32E-02
118	GO:0010053: root epidermal cell differentiation	1.32E-02
119	GO:0019762: glucosinolate catabolic process	1.43E-02
120	GO:0006071: glycerol metabolic process	1.43E-02
121	GO:0019344: cysteine biosynthetic process	1.54E-02
122	GO:0009116: nucleoside metabolic process	1.54E-02
123	GO:0000027: ribosomal large subunit assembly	1.54E-02
124	GO:0045333: cellular respiration	1.54E-02
125	GO:0006487: protein N-linked glycosylation	1.54E-02
126	GO:0006096: glycolytic process	1.65E-02
127	GO:0010026: trichome differentiation	1.65E-02
128	GO:0061077: chaperone-mediated protein folding	1.76E-02
129	GO:0031408: oxylipin biosynthetic process	1.76E-02
130	GO:0009814: defense response, incompatible interaction	1.88E-02
131	GO:0007005: mitochondrion organization	1.88E-02
132	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.00E-02
133	GO:0045454: cell redox homeostasis	2.03E-02
134	GO:0009306: protein secretion	2.12E-02
135	GO:0006457: protein folding	2.34E-02
136	GO:0000413: protein peptidyl-prolyl isomerization	2.37E-02
137	GO:0006662: glycerol ether metabolic process	2.50E-02
138	GO:0010182: sugar mediated signaling pathway	2.50E-02
139	GO:0009741: response to brassinosteroid	2.50E-02
140	GO:0015986: ATP synthesis coupled proton transport	2.64E-02
141	GO:0009791: post-embryonic development	2.77E-02
142	GO:0010583: response to cyclopentenone	3.05E-02
143	GO:0006633: fatty acid biosynthetic process	3.13E-02
144	GO:1901657: glycosyl compound metabolic process	3.19E-02
145	GO:0006413: translational initiation	3.20E-02
146	GO:0009828: plant-type cell wall loosening	3.34E-02
147	GO:0010286: heat acclimation	3.48E-02
148	GO:0018298: protein-chromophore linkage	4.57E-02
149	GO:0008219: cell death	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0008887: glycerate kinase activity	0.00E+00
5	GO:0045550: geranylgeranyl reductase activity	0.00E+00
6	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
7	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
8	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
9	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
10	GO:0046408: chlorophyll synthetase activity	0.00E+00
11	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
12	GO:0051738: xanthophyll binding	0.00E+00
13	GO:0003735: structural constituent of ribosome	7.38E-14
14	GO:0019843: rRNA binding	3.11E-12
15	GO:0016851: magnesium chelatase activity	3.12E-05
16	GO:0043495: protein anchor	5.61E-05
17	GO:0022891: substrate-specific transmembrane transporter activity	1.78E-04
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.73E-04
19	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.92E-04
20	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.92E-04
21	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.92E-04
22	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.92E-04
23	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.92E-04
24	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.92E-04
25	GO:0009374: biotin binding	2.92E-04
26	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.92E-04
27	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.92E-04
28	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.57E-04
29	GO:0016168: chlorophyll binding	6.38E-04
30	GO:0102083: 7,8-dihydromonapterin aldolase activity	6.40E-04
31	GO:0052832: inositol monophosphate 3-phosphatase activity	6.40E-04
32	GO:0008934: inositol monophosphate 1-phosphatase activity	6.40E-04
33	GO:0052833: inositol monophosphate 4-phosphatase activity	6.40E-04
34	GO:0016630: protochlorophyllide reductase activity	6.40E-04
35	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.40E-04
36	GO:0004150: dihydroneopterin aldolase activity	6.40E-04
37	GO:0042389: omega-3 fatty acid desaturase activity	6.40E-04
38	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.04E-03
39	GO:0004751: ribose-5-phosphate isomerase activity	1.04E-03
40	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.04E-03
41	GO:0005528: FK506 binding	1.37E-03
42	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.48E-03
43	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.48E-03
44	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.48E-03
45	GO:0004550: nucleoside diphosphate kinase activity	1.48E-03
46	GO:0043023: ribosomal large subunit binding	1.48E-03
47	GO:0043424: protein histidine kinase binding	1.51E-03
48	GO:0004845: uracil phosphoribosyltransferase activity	1.99E-03
49	GO:0004045: aminoacyl-tRNA hydrolase activity	1.99E-03
50	GO:0015120: phosphoglycerate transmembrane transporter activity	1.99E-03
51	GO:0004659: prenyltransferase activity	1.99E-03
52	GO:0005319: lipid transporter activity	1.99E-03
53	GO:0003727: single-stranded RNA binding	2.15E-03
54	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.54E-03
55	GO:0003959: NADPH dehydrogenase activity	2.54E-03
56	GO:0004040: amidase activity	2.54E-03
57	GO:0016651: oxidoreductase activity, acting on NAD(P)H	2.54E-03
58	GO:0003989: acetyl-CoA carboxylase activity	2.54E-03
59	GO:0016462: pyrophosphatase activity	3.14E-03
60	GO:0051082: unfolded protein binding	3.51E-03
61	GO:0051920: peroxiredoxin activity	3.77E-03
62	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.77E-03
63	GO:0004849: uridine kinase activity	3.77E-03
64	GO:0008235: metalloexopeptidase activity	4.45E-03
65	GO:0004427: inorganic diphosphatase activity	4.45E-03
66	GO:0019899: enzyme binding	4.45E-03
67	GO:0016209: antioxidant activity	5.17E-03
68	GO:0102483: scopolin beta-glucosidase activity	5.68E-03
69	GO:0008889: glycerophosphodiester phosphodiesterase activity	6.71E-03
70	GO:0009055: electron carrier activity	7.44E-03
71	GO:0016491: oxidoreductase activity	8.21E-03
72	GO:0008047: enzyme activator activity	8.40E-03
73	GO:0008422: beta-glucosidase activity	8.72E-03
74	GO:0044183: protein binding involved in protein folding	9.30E-03
75	GO:0005543: phospholipid binding	9.30E-03
76	GO:0004177: aminopeptidase activity	9.30E-03
77	GO:0031072: heat shock protein binding	1.12E-02
78	GO:0051537: 2 iron, 2 sulfur cluster binding	1.12E-02
79	GO:0004601: peroxidase activity	1.23E-02
80	GO:0051119: sugar transmembrane transporter activity	1.32E-02
81	GO:0003690: double-stranded DNA binding	1.44E-02
82	GO:0051087: chaperone binding	1.65E-02
83	GO:0004650: polygalacturonase activity	1.81E-02
84	GO:0015035: protein disulfide oxidoreductase activity	2.05E-02
85	GO:0047134: protein-disulfide reductase activity	2.25E-02
86	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.50E-02
87	GO:0004791: thioredoxin-disulfide reductase activity	2.64E-02
88	GO:0010181: FMN binding	2.64E-02
89	GO:0005507: copper ion binding	2.69E-02
90	GO:0048038: quinone binding	2.91E-02
91	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.19E-02
92	GO:0015297: antiporter activity	3.28E-02
93	GO:0016759: cellulose synthase activity	3.34E-02
94	GO:0008483: transaminase activity	3.48E-02
95	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.48E-02
96	GO:0005509: calcium ion binding	4.00E-02
97	GO:0003743: translation initiation factor activity	4.01E-02
98	GO:0008375: acetylglucosaminyltransferase activity	4.09E-02
99	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0009507: chloroplast	6.12E-77
5	GO:0009570: chloroplast stroma	1.87E-54
6	GO:0009535: chloroplast thylakoid membrane	6.12E-42
7	GO:0009941: chloroplast envelope	8.92E-42
8	GO:0009579: thylakoid	1.76E-39
9	GO:0009534: chloroplast thylakoid	5.38E-23
10	GO:0005840: ribosome	2.34E-15
11	GO:0009543: chloroplast thylakoid lumen	2.97E-15
12	GO:0031977: thylakoid lumen	1.20E-14
13	GO:0009654: photosystem II oxygen evolving complex	9.65E-08
14	GO:0009706: chloroplast inner membrane	6.80E-06
15	GO:0031969: chloroplast membrane	2.19E-05
16	GO:0019898: extrinsic component of membrane	2.23E-05
17	GO:0000311: plastid large ribosomal subunit	4.17E-05
18	GO:0010319: stromule	4.26E-05
19	GO:0009536: plastid	4.58E-05
20	GO:0030095: chloroplast photosystem II	6.23E-05
21	GO:0015935: small ribosomal subunit	1.38E-04
22	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.92E-04
23	GO:0009523: photosystem II	3.37E-04
24	GO:0009295: nucleoid	5.13E-04
25	GO:0042170: plastid membrane	6.40E-04
26	GO:0009508: plastid chromosome	8.88E-04
27	GO:0009528: plastid inner membrane	1.04E-03
28	GO:0010007: magnesium chelatase complex	1.04E-03
29	GO:0009317: acetyl-CoA carboxylase complex	1.04E-03
30	GO:0048046: apoplast	1.35E-03
31	GO:0042651: thylakoid membrane	1.51E-03
32	GO:0009532: plastid stroma	1.66E-03
33	GO:0009527: plastid outer membrane	1.99E-03
34	GO:0009517: PSII associated light-harvesting complex II	1.99E-03
35	GO:0055035: plastid thylakoid membrane	2.54E-03
36	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.14E-03
37	GO:0009538: photosystem I reaction center	5.17E-03
38	GO:0009539: photosystem II reaction center	5.92E-03
39	GO:0005763: mitochondrial small ribosomal subunit	6.71E-03
40	GO:0015934: large ribosomal subunit	7.28E-03
41	GO:0009505: plant-type cell wall	7.45E-03
42	GO:0046658: anchored component of plasma membrane	1.01E-02
43	GO:0032040: small-subunit processome	1.02E-02
44	GO:0016020: membrane	1.04E-02
45	GO:0000312: plastid small ribosomal subunit	1.22E-02
46	GO:0043234: protein complex	1.43E-02
47	GO:0022626: cytosolic ribosome	1.49E-02
48	GO:0010287: plastoglobule	2.36E-02
49	GO:0005778: peroxisomal membrane	3.48E-02
50	GO:0030529: intracellular ribonucleoprotein complex	3.78E-02
51	GO:0009707: chloroplast outer membrane	4.57E-02