Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G24090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0060416: response to growth hormone0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
10GO:0042821: pyridoxal biosynthetic process0.00E+00
11GO:0042820: vitamin B6 catabolic process0.00E+00
12GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
13GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
14GO:0097164: ammonium ion metabolic process0.00E+00
15GO:0006412: translation1.14E-15
16GO:0032544: plastid translation3.78E-13
17GO:0042254: ribosome biogenesis6.55E-11
18GO:0015995: chlorophyll biosynthetic process2.24E-09
19GO:0015979: photosynthesis6.57E-09
20GO:0010027: thylakoid membrane organization3.48E-08
21GO:0009658: chloroplast organization1.75E-06
22GO:0010275: NAD(P)H dehydrogenase complex assembly1.05E-05
23GO:0009735: response to cytokinin1.97E-05
24GO:0009793: embryo development ending in seed dormancy5.40E-05
25GO:0009773: photosynthetic electron transport in photosystem I1.08E-04
26GO:0032502: developmental process1.24E-04
27GO:0009767: photosynthetic electron transport chain1.60E-04
28GO:0010207: photosystem II assembly1.91E-04
29GO:0032543: mitochondrial translation2.05E-04
30GO:0006655: phosphatidylglycerol biosynthetic process2.90E-04
31GO:0006418: tRNA aminoacylation for protein translation3.47E-04
32GO:0010019: chloroplast-nucleus signaling pathway3.89E-04
33GO:0042372: phylloquinone biosynthetic process3.89E-04
34GO:1901259: chloroplast rRNA processing3.89E-04
35GO:0042371: vitamin K biosynthetic process4.90E-04
36GO:0043007: maintenance of rDNA4.90E-04
37GO:0034337: RNA folding4.90E-04
38GO:0071588: hydrogen peroxide mediated signaling pathway4.90E-04
39GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.90E-04
40GO:0006434: seryl-tRNA aminoacylation4.90E-04
41GO:0009443: pyridoxal 5'-phosphate salvage4.90E-04
42GO:0006438: valyl-tRNA aminoacylation4.90E-04
43GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process4.90E-04
44GO:1904966: positive regulation of vitamin E biosynthetic process4.90E-04
45GO:1904964: positive regulation of phytol biosynthetic process4.90E-04
46GO:0048564: photosystem I assembly6.22E-04
47GO:0042255: ribosome assembly6.22E-04
48GO:0006353: DNA-templated transcription, termination6.22E-04
49GO:0000413: protein peptidyl-prolyl isomerization6.79E-04
50GO:0071482: cellular response to light stimulus7.58E-04
51GO:0006783: heme biosynthetic process9.06E-04
52GO:0080148: negative regulation of response to water deprivation1.05E-03
53GO:0006529: asparagine biosynthetic process1.05E-03
54GO:0043039: tRNA aminoacylation1.05E-03
55GO:1902326: positive regulation of chlorophyll biosynthetic process1.05E-03
56GO:0070981: L-asparagine biosynthetic process1.05E-03
57GO:0045717: negative regulation of fatty acid biosynthetic process1.05E-03
58GO:0018026: peptidyl-lysine monomethylation1.05E-03
59GO:0006782: protoporphyrinogen IX biosynthetic process1.24E-03
60GO:0009073: aromatic amino acid family biosynthetic process1.43E-03
61GO:0006352: DNA-templated transcription, initiation1.43E-03
62GO:0016024: CDP-diacylglycerol biosynthetic process1.64E-03
63GO:0006954: inflammatory response1.72E-03
64GO:0090391: granum assembly1.72E-03
65GO:0006518: peptide metabolic process1.72E-03
66GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.72E-03
67GO:0018298: protein-chromophore linkage2.18E-03
68GO:0055070: copper ion homeostasis2.50E-03
69GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.50E-03
70GO:2001141: regulation of RNA biosynthetic process2.50E-03
71GO:0009052: pentose-phosphate shunt, non-oxidative branch2.50E-03
72GO:0006241: CTP biosynthetic process2.50E-03
73GO:0006424: glutamyl-tRNA aminoacylation2.50E-03
74GO:0006165: nucleoside diphosphate phosphorylation2.50E-03
75GO:0006228: UTP biosynthetic process2.50E-03
76GO:0016556: mRNA modification2.50E-03
77GO:0019344: cysteine biosynthetic process2.93E-03
78GO:0010037: response to carbon dioxide3.36E-03
79GO:0006808: regulation of nitrogen utilization3.36E-03
80GO:0015976: carbon utilization3.36E-03
81GO:0006183: GTP biosynthetic process3.36E-03
82GO:2000122: negative regulation of stomatal complex development3.36E-03
83GO:0006021: inositol biosynthetic process3.36E-03
84GO:0071483: cellular response to blue light3.36E-03
85GO:0044206: UMP salvage3.36E-03
86GO:0006749: glutathione metabolic process3.36E-03
87GO:0035434: copper ion transmembrane transport4.31E-03
88GO:0009247: glycolipid biosynthetic process4.31E-03
89GO:0006564: L-serine biosynthetic process4.31E-03
90GO:0010236: plastoquinone biosynthetic process4.31E-03
91GO:0043097: pyrimidine nucleoside salvage4.31E-03
92GO:0045038: protein import into chloroplast thylakoid membrane4.31E-03
93GO:0009451: RNA modification4.61E-03
94GO:0010405: arabinogalactan protein metabolic process5.34E-03
95GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.34E-03
96GO:0016554: cytidine to uridine editing5.34E-03
97GO:0042793: transcription from plastid promoter5.34E-03
98GO:0010190: cytochrome b6f complex assembly5.34E-03
99GO:0006206: pyrimidine nucleobase metabolic process5.34E-03
100GO:0032973: amino acid export5.34E-03
101GO:0018258: protein O-linked glycosylation via hydroxyproline5.34E-03
102GO:0046855: inositol phosphate dephosphorylation5.34E-03
103GO:0009854: oxidative photosynthetic carbon pathway6.44E-03
104GO:0010555: response to mannitol6.44E-03
105GO:0009955: adaxial/abaxial pattern specification6.44E-03
106GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.44E-03
107GO:0030488: tRNA methylation6.44E-03
108GO:0000302: response to reactive oxygen species7.22E-03
109GO:0009395: phospholipid catabolic process7.62E-03
110GO:0009772: photosynthetic electron transport in photosystem II7.62E-03
111GO:0043090: amino acid import7.62E-03
112GO:0006821: chloride transport7.62E-03
113GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.62E-03
114GO:0010196: nonphotochemical quenching7.62E-03
115GO:0009645: response to low light intensity stimulus7.62E-03
116GO:0010444: guard mother cell differentiation7.62E-03
117GO:0006400: tRNA modification7.62E-03
118GO:0045292: mRNA cis splicing, via spliceosome8.87E-03
119GO:0009642: response to light intensity8.87E-03
120GO:0009690: cytokinin metabolic process8.87E-03
121GO:0006605: protein targeting8.87E-03
122GO:0019375: galactolipid biosynthetic process8.87E-03
123GO:0010078: maintenance of root meristem identity8.87E-03
124GO:0009704: de-etiolation8.87E-03
125GO:0006457: protein folding9.16E-03
126GO:0043562: cellular response to nitrogen levels1.02E-02
127GO:0017004: cytochrome complex assembly1.02E-02
128GO:0009932: cell tip growth1.02E-02
129GO:0022900: electron transport chain1.02E-02
130GO:0000373: Group II intron splicing1.16E-02
131GO:0048589: developmental growth1.16E-02
132GO:0009821: alkaloid biosynthetic process1.16E-02
133GO:0010206: photosystem II repair1.16E-02
134GO:0080144: amino acid homeostasis1.16E-02
135GO:0006779: porphyrin-containing compound biosynthetic process1.30E-02
136GO:1900865: chloroplast RNA modification1.30E-02
137GO:0048481: plant ovule development1.37E-02
138GO:0009870: defense response signaling pathway, resistance gene-dependent1.45E-02
139GO:0006535: cysteine biosynthetic process from serine1.45E-02
140GO:0042744: hydrogen peroxide catabolic process1.48E-02
141GO:0045454: cell redox homeostasis1.58E-02
142GO:0048527: lateral root development1.59E-02
143GO:0018119: peptidyl-cysteine S-nitrosylation1.61E-02
144GO:0009684: indoleacetic acid biosynthetic process1.61E-02
145GO:0019684: photosynthesis, light reaction1.61E-02
146GO:0006415: translational termination1.61E-02
147GO:0006633: fatty acid biosynthetic process1.68E-02
148GO:0006790: sulfur compound metabolic process1.78E-02
149GO:0006810: transport1.80E-02
150GO:0034599: cellular response to oxidative stress1.82E-02
151GO:0050826: response to freezing1.94E-02
152GO:0010588: cotyledon vascular tissue pattern formation1.94E-02
153GO:0010628: positive regulation of gene expression1.94E-02
154GO:0030001: metal ion transport1.99E-02
155GO:0048467: gynoecium development2.12E-02
156GO:0006541: glutamine metabolic process2.12E-02
157GO:0010020: chloroplast fission2.12E-02
158GO:0090351: seedling development2.30E-02
159GO:0046854: phosphatidylinositol phosphorylation2.30E-02
160GO:0019853: L-ascorbic acid biosynthetic process2.30E-02
161GO:0010167: response to nitrate2.30E-02
162GO:0008380: RNA splicing2.36E-02
163GO:0009644: response to high light intensity2.44E-02
164GO:0009116: nucleoside metabolic process2.67E-02
165GO:0000027: ribosomal large subunit assembly2.67E-02
166GO:0007010: cytoskeleton organization2.67E-02
167GO:0009768: photosynthesis, light harvesting in photosystem I2.87E-02
168GO:0019915: lipid storage3.07E-02
169GO:0061077: chaperone-mediated protein folding3.07E-02
170GO:0016114: terpenoid biosynthetic process3.07E-02
171GO:0007005: mitochondrion organization3.27E-02
172GO:0016226: iron-sulfur cluster assembly3.27E-02
173GO:0009411: response to UV3.48E-02
174GO:0009306: protein secretion3.70E-02
175GO:0009409: response to cold3.79E-02
176GO:0016117: carotenoid biosynthetic process3.91E-02
177GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.91E-02
178GO:0010087: phloem or xylem histogenesis4.14E-02
179GO:0080022: primary root development4.14E-02
180GO:0008033: tRNA processing4.14E-02
181GO:0009741: response to brassinosteroid4.36E-02
182GO:0009958: positive gravitropism4.36E-02
183GO:0006814: sodium ion transport4.59E-02
184GO:0009646: response to absence of light4.59E-02
185GO:0008654: phospholipid biosynthetic process4.83E-02
186GO:0009851: auxin biosynthetic process4.83E-02
187GO:0048825: cotyledon development4.83E-02
RankGO TermAdjusted P value
1GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
2GO:0046408: chlorophyll synthetase activity0.00E+00
3GO:0005048: signal sequence binding0.00E+00
4GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
5GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
6GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
7GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
8GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
9GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
10GO:0008887: glycerate kinase activity0.00E+00
11GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
12GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
13GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
14GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
15GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
16GO:0004822: isoleucine-tRNA ligase activity0.00E+00
17GO:0004823: leucine-tRNA ligase activity0.00E+00
18GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
19GO:0019843: rRNA binding1.24E-28
20GO:0003735: structural constituent of ribosome2.49E-18
21GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.42E-09
22GO:0016851: magnesium chelatase activity5.51E-07
23GO:0005528: FK506 binding1.83E-05
24GO:0002161: aminoacyl-tRNA editing activity3.59E-05
25GO:0001053: plastid sigma factor activity1.34E-04
26GO:0016987: sigma factor activity1.34E-04
27GO:0004130: cytochrome-c peroxidase activity2.90E-04
28GO:0051920: peroxiredoxin activity3.89E-04
29GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.89E-04
30GO:0004328: formamidase activity4.90E-04
31GO:0010347: L-galactose-1-phosphate phosphatase activity4.90E-04
32GO:0004560: alpha-L-fucosidase activity4.90E-04
33GO:0004828: serine-tRNA ligase activity4.90E-04
34GO:0009374: biotin binding4.90E-04
35GO:0004655: porphobilinogen synthase activity4.90E-04
36GO:0004071: aspartate-ammonia ligase activity4.90E-04
37GO:0004853: uroporphyrinogen decarboxylase activity4.90E-04
38GO:0004832: valine-tRNA ligase activity4.90E-04
39GO:0009055: electron carrier activity5.67E-04
40GO:0004812: aminoacyl-tRNA ligase activity6.16E-04
41GO:0016209: antioxidant activity6.22E-04
42GO:0004033: aldo-keto reductase (NADP) activity6.22E-04
43GO:0051537: 2 iron, 2 sulfur cluster binding8.07E-04
44GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.05E-03
45GO:0004617: phosphoglycerate dehydrogenase activity1.05E-03
46GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.05E-03
47GO:0052832: inositol monophosphate 3-phosphatase activity1.05E-03
48GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.05E-03
49GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.05E-03
50GO:0008934: inositol monophosphate 1-phosphatase activity1.05E-03
51GO:0052833: inositol monophosphate 4-phosphatase activity1.05E-03
52GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.05E-03
53GO:0016168: chlorophyll binding1.67E-03
54GO:0070402: NADPH binding1.72E-03
55GO:0016531: copper chaperone activity1.72E-03
56GO:0019829: cation-transporting ATPase activity1.72E-03
57GO:0017150: tRNA dihydrouridine synthase activity1.72E-03
58GO:0004148: dihydrolipoyl dehydrogenase activity1.72E-03
59GO:0004751: ribose-5-phosphate isomerase activity1.72E-03
60GO:0030267: glyoxylate reductase (NADP) activity1.72E-03
61GO:0004519: endonuclease activity2.10E-03
62GO:0004601: peroxidase activity2.18E-03
63GO:0016788: hydrolase activity, acting on ester bonds2.26E-03
64GO:0004222: metalloendopeptidase activity2.47E-03
65GO:0008097: 5S rRNA binding2.50E-03
66GO:0008508: bile acid:sodium symporter activity2.50E-03
67GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.50E-03
68GO:0035250: UDP-galactosyltransferase activity2.50E-03
69GO:0016149: translation release factor activity, codon specific2.50E-03
70GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.50E-03
71GO:0004550: nucleoside diphosphate kinase activity2.50E-03
72GO:0051536: iron-sulfur cluster binding2.93E-03
73GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.36E-03
74GO:0004659: prenyltransferase activity3.36E-03
75GO:0016279: protein-lysine N-methyltransferase activity3.36E-03
76GO:0004845: uracil phosphoribosyltransferase activity3.36E-03
77GO:0016836: hydro-lyase activity3.36E-03
78GO:0004045: aminoacyl-tRNA hydrolase activity3.36E-03
79GO:0043495: protein anchor3.36E-03
80GO:0022891: substrate-specific transmembrane transporter activity4.25E-03
81GO:0003989: acetyl-CoA carboxylase activity4.31E-03
82GO:0016846: carbon-sulfur lyase activity4.31E-03
83GO:0030414: peptidase inhibitor activity4.31E-03
84GO:0016773: phosphotransferase activity, alcohol group as acceptor4.31E-03
85GO:0004040: amidase activity4.31E-03
86GO:0003727: single-stranded RNA binding4.62E-03
87GO:0003723: RNA binding5.01E-03
88GO:0005247: voltage-gated chloride channel activity5.34E-03
89GO:0004605: phosphatidate cytidylyltransferase activity5.34E-03
90GO:0080030: methyl indole-3-acetate esterase activity5.34E-03
91GO:1990714: hydroxyproline O-galactosyltransferase activity5.34E-03
92GO:0016208: AMP binding5.34E-03
93GO:0016688: L-ascorbate peroxidase activity5.34E-03
94GO:0003690: double-stranded DNA binding6.26E-03
95GO:0004124: cysteine synthase activity6.44E-03
96GO:0051753: mannan synthase activity6.44E-03
97GO:0004849: uridine kinase activity6.44E-03
98GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.44E-03
99GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.44E-03
100GO:0102391: decanoate--CoA ligase activity6.44E-03
101GO:0005509: calcium ion binding6.71E-03
102GO:0004467: long-chain fatty acid-CoA ligase activity7.62E-03
103GO:0019899: enzyme binding7.62E-03
104GO:0008312: 7S RNA binding8.87E-03
105GO:0016597: amino acid binding9.90E-03
106GO:0005375: copper ion transmembrane transporter activity1.02E-02
107GO:0003747: translation release factor activity1.16E-02
108GO:0016844: strictosidine synthase activity1.30E-02
109GO:0004864: protein phosphatase inhibitor activity1.45E-02
110GO:0008794: arsenate reductase (glutaredoxin) activity1.61E-02
111GO:0000049: tRNA binding1.78E-02
112GO:0003993: acid phosphatase activity1.82E-02
113GO:0004089: carbonate dehydratase activity1.94E-02
114GO:0031072: heat shock protein binding1.94E-02
115GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.94E-02
116GO:0051539: 4 iron, 4 sulfur cluster binding1.99E-02
117GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.12E-02
118GO:0008266: poly(U) RNA binding2.12E-02
119GO:0031409: pigment binding2.48E-02
120GO:0043424: protein histidine kinase binding2.87E-02
121GO:0046872: metal ion binding3.03E-02
122GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.04E-02
123GO:0016491: oxidoreductase activity3.61E-02
124GO:0008514: organic anion transmembrane transporter activity3.70E-02
125GO:0008080: N-acetyltransferase activity4.36E-02
126GO:0015035: protein disulfide oxidoreductase activity4.44E-02
127GO:0010181: FMN binding4.59E-02
128GO:0004872: receptor activity4.83E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009507: chloroplast1.66E-104
5GO:0009570: chloroplast stroma4.77E-56
6GO:0009941: chloroplast envelope1.10E-41
7GO:0009535: chloroplast thylakoid membrane1.61E-34
8GO:0009543: chloroplast thylakoid lumen4.30E-32
9GO:0009579: thylakoid9.47E-27
10GO:0031977: thylakoid lumen8.86E-23
11GO:0009534: chloroplast thylakoid2.56E-20
12GO:0005840: ribosome1.43E-18
13GO:0009654: photosystem II oxygen evolving complex3.31E-10
14GO:0019898: extrinsic component of membrane6.42E-09
15GO:0009536: plastid4.89E-08
16GO:0010007: magnesium chelatase complex1.15E-07
17GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.17E-06
18GO:0030095: chloroplast photosystem II8.92E-06
19GO:0031969: chloroplast membrane3.28E-05
20GO:0000311: plastid large ribosomal subunit1.32E-04
21GO:0009295: nucleoid1.73E-04
22GO:0000312: plastid small ribosomal subunit1.91E-04
23GO:0042651: thylakoid membrane3.47E-04
24GO:0009547: plastid ribosome4.90E-04
25GO:0009782: photosystem I antenna complex4.90E-04
26GO:0009515: granal stacked thylakoid4.90E-04
27GO:0009533: chloroplast stromal thylakoid4.99E-04
28GO:0080085: signal recognition particle, chloroplast targeting1.05E-03
29GO:0000427: plastid-encoded plastid RNA polymerase complex1.05E-03
30GO:0016020: membrane1.29E-03
31GO:0046658: anchored component of plasma membrane1.65E-03
32GO:0009509: chromoplast1.72E-03
33GO:0009317: acetyl-CoA carboxylase complex1.72E-03
34GO:0009508: plastid chromosome1.87E-03
35GO:0009706: chloroplast inner membrane1.93E-03
36GO:0015934: large ribosomal subunit2.63E-03
37GO:0015935: small ribosomal subunit3.55E-03
38GO:0031225: anchored component of membrane4.54E-03
39GO:0022626: cytosolic ribosome5.07E-03
40GO:0034707: chloride channel complex5.34E-03
41GO:0009523: photosystem II6.74E-03
42GO:0043231: intracellular membrane-bounded organelle7.51E-03
43GO:0005786: signal recognition particle, endoplasmic reticulum targeting1.02E-02
44GO:0005763: mitochondrial small ribosomal subunit1.16E-02
45GO:0032040: small-subunit processome1.78E-02
46GO:0030076: light-harvesting complex2.30E-02
47GO:0022627: cytosolic small ribosomal subunit2.69E-02
48GO:0009532: plastid stroma3.07E-02
49GO:0022625: cytosolic large ribosomal subunit4.53E-02
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Gene type



Gene DE type