co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G23740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000372: Group I intron splicing	0.00E+00
2	GO:0090042: tubulin deacetylation	0.00E+00
3	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
4	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
5	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
6	GO:0090706: specification of plant organ position	0.00E+00
7	GO:0045014: negative regulation of transcription by glucose	0.00E+00
8	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
9	GO:0034755: iron ion transmembrane transport	4.22E-06
10	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.22E-06
11	GO:0048507: meristem development	1.63E-05
12	GO:0015994: chlorophyll metabolic process	6.01E-05
13	GO:0009913: epidermal cell differentiation	1.37E-04
14	GO:0009772: photosynthetic electron transport in photosystem II	2.45E-04
15	GO:0000476: maturation of 4.5S rRNA	3.04E-04
16	GO:0000967: rRNA 5'-end processing	3.04E-04
17	GO:0006824: cobalt ion transport	3.04E-04
18	GO:0015808: L-alanine transport	3.04E-04
19	GO:0010480: microsporocyte differentiation	3.04E-04
20	GO:0031338: regulation of vesicle fusion	3.04E-04
21	GO:0006723: cuticle hydrocarbon biosynthetic process	3.04E-04
22	GO:0000481: maturation of 5S rRNA	3.04E-04
23	GO:0042547: cell wall modification involved in multidimensional cell growth	3.04E-04
24	GO:0071461: cellular response to redox state	3.04E-04
25	GO:0043609: regulation of carbon utilization	3.04E-04
26	GO:0010028: xanthophyll cycle	3.04E-04
27	GO:0034337: RNA folding	3.04E-04
28	GO:0010450: inflorescence meristem growth	3.04E-04
29	GO:0015969: guanosine tetraphosphate metabolic process	3.04E-04
30	GO:0008610: lipid biosynthetic process	3.09E-04
31	GO:0071482: cellular response to light stimulus	3.80E-04
32	GO:0006629: lipid metabolic process	4.26E-04
33	GO:0010206: photosystem II repair	4.57E-04
34	GO:0000373: Group II intron splicing	4.57E-04
35	GO:0080005: photosystem stoichiometry adjustment	6.66E-04
36	GO:0098712: L-glutamate import across plasma membrane	6.66E-04
37	GO:0016122: xanthophyll metabolic process	6.66E-04
38	GO:0010289: homogalacturonan biosynthetic process	6.66E-04
39	GO:0010270: photosystem II oxygen evolving complex assembly	6.66E-04
40	GO:0015804: neutral amino acid transport	6.66E-04
41	GO:0034470: ncRNA processing	6.66E-04
42	GO:0010207: photosystem II assembly	1.06E-03
43	GO:0006000: fructose metabolic process	1.08E-03
44	GO:0043447: alkane biosynthetic process	1.08E-03
45	GO:0006518: peptide metabolic process	1.08E-03
46	GO:0006013: mannose metabolic process	1.08E-03
47	GO:0043617: cellular response to sucrose starvation	1.08E-03
48	GO:0090630: activation of GTPase activity	1.08E-03
49	GO:0045165: cell fate commitment	1.08E-03
50	GO:0080170: hydrogen peroxide transmembrane transport	1.55E-03
51	GO:2001141: regulation of RNA biosynthetic process	1.55E-03
52	GO:0031122: cytoplasmic microtubule organization	2.07E-03
53	GO:0006085: acetyl-CoA biosynthetic process	2.07E-03
54	GO:0045727: positive regulation of translation	2.07E-03
55	GO:0006364: rRNA processing	2.42E-03
56	GO:0032543: mitochondrial translation	2.65E-03
57	GO:0045038: protein import into chloroplast thylakoid membrane	2.65E-03
58	GO:0048497: maintenance of floral organ identity	2.65E-03
59	GO:1902183: regulation of shoot apical meristem development	2.65E-03
60	GO:0010438: cellular response to sulfur starvation	2.65E-03
61	GO:0010158: abaxial cell fate specification	2.65E-03
62	GO:0042335: cuticle development	2.67E-03
63	GO:0042631: cellular response to water deprivation	2.67E-03
64	GO:0010305: leaf vascular tissue pattern formation	2.88E-03
65	GO:0006828: manganese ion transport	3.27E-03
66	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.27E-03
67	GO:0000741: karyogamy	3.27E-03
68	GO:0009759: indole glucosinolate biosynthetic process	3.27E-03
69	GO:0006354: DNA-templated transcription, elongation	3.27E-03
70	GO:0010405: arabinogalactan protein metabolic process	3.27E-03
71	GO:0006751: glutathione catabolic process	3.27E-03
72	GO:0042549: photosystem II stabilization	3.27E-03
73	GO:0010256: endomembrane system organization	3.27E-03
74	GO:0000470: maturation of LSU-rRNA	3.27E-03
75	GO:0009942: longitudinal axis specification	3.93E-03
76	GO:0009854: oxidative photosynthetic carbon pathway	3.93E-03
77	GO:0071805: potassium ion transmembrane transport	4.56E-03
78	GO:0048437: floral organ development	4.64E-03
79	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.64E-03
80	GO:1900057: positive regulation of leaf senescence	4.64E-03
81	GO:0051510: regulation of unidimensional cell growth	4.64E-03
82	GO:0043090: amino acid import	4.64E-03
83	GO:0009416: response to light stimulus	4.94E-03
84	GO:0006605: protein targeting	5.39E-03
85	GO:0032508: DNA duplex unwinding	5.39E-03
86	GO:0010492: maintenance of shoot apical meristem identity	5.39E-03
87	GO:0055114: oxidation-reduction process	5.70E-03
88	GO:0015995: chlorophyll biosynthetic process	6.04E-03
89	GO:0006526: arginine biosynthetic process	6.18E-03
90	GO:0032544: plastid translation	6.18E-03
91	GO:0010093: specification of floral organ identity	6.18E-03
92	GO:0006002: fructose 6-phosphate metabolic process	6.18E-03
93	GO:0006098: pentose-phosphate shunt	7.01E-03
94	GO:0090305: nucleic acid phosphodiester bond hydrolysis	7.01E-03
95	GO:2000024: regulation of leaf development	7.01E-03
96	GO:0048589: developmental growth	7.01E-03
97	GO:0009051: pentose-phosphate shunt, oxidative branch	7.01E-03
98	GO:0010205: photoinhibition	7.87E-03
99	GO:0006779: porphyrin-containing compound biosynthetic process	7.87E-03
100	GO:0009853: photorespiration	8.49E-03
101	GO:0008152: metabolic process	8.51E-03
102	GO:0055062: phosphate ion homeostasis	8.77E-03
103	GO:0006782: protoporphyrinogen IX biosynthetic process	8.77E-03
104	GO:0019538: protein metabolic process	8.77E-03
105	GO:0006535: cysteine biosynthetic process from serine	8.77E-03
106	GO:0009773: photosynthetic electron transport in photosystem I	9.71E-03
107	GO:0006879: cellular iron ion homeostasis	9.71E-03
108	GO:0006352: DNA-templated transcription, initiation	9.71E-03
109	GO:0018119: peptidyl-cysteine S-nitrosylation	9.71E-03
110	GO:0048229: gametophyte development	9.71E-03
111	GO:0000038: very long-chain fatty acid metabolic process	9.71E-03
112	GO:0006816: calcium ion transport	9.71E-03
113	GO:0002213: defense response to insect	1.07E-02
114	GO:0010152: pollen maturation	1.07E-02
115	GO:0030048: actin filament-based movement	1.17E-02
116	GO:0010102: lateral root morphogenesis	1.17E-02
117	GO:0006006: glucose metabolic process	1.17E-02
118	GO:0018107: peptidyl-threonine phosphorylation	1.17E-02
119	GO:0009718: anthocyanin-containing compound biosynthetic process	1.17E-02
120	GO:0010075: regulation of meristem growth	1.17E-02
121	GO:0006094: gluconeogenesis	1.17E-02
122	GO:0009767: photosynthetic electron transport chain	1.17E-02
123	GO:0009933: meristem structural organization	1.27E-02
124	GO:0019253: reductive pentose-phosphate cycle	1.27E-02
125	GO:0009934: regulation of meristem structural organization	1.27E-02
126	GO:0048768: root hair cell tip growth	1.27E-02
127	GO:0010030: positive regulation of seed germination	1.38E-02
128	GO:0006813: potassium ion transport	1.48E-02
129	GO:0010025: wax biosynthetic process	1.49E-02
130	GO:0006636: unsaturated fatty acid biosynthetic process	1.49E-02
131	GO:0006833: water transport	1.49E-02
132	GO:0000162: tryptophan biosynthetic process	1.49E-02
133	GO:0009944: polarity specification of adaxial/abaxial axis	1.60E-02
134	GO:0019344: cysteine biosynthetic process	1.60E-02
135	GO:0006418: tRNA aminoacylation for protein translation	1.72E-02
136	GO:0016575: histone deacetylation	1.72E-02
137	GO:0006096: glycolytic process	1.75E-02
138	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.82E-02
139	GO:0061077: chaperone-mediated protein folding	1.84E-02
140	GO:0046777: protein autophosphorylation	1.90E-02
141	GO:0009814: defense response, incompatible interaction	1.96E-02
142	GO:0009733: response to auxin	2.05E-02
143	GO:0009686: gibberellin biosynthetic process	2.09E-02
144	GO:0071369: cellular response to ethylene stimulus	2.09E-02
145	GO:0018105: peptidyl-serine phosphorylation	2.18E-02
146	GO:0048443: stamen development	2.22E-02
147	GO:0009737: response to abscisic acid	2.32E-02
148	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.35E-02
149	GO:0034220: ion transmembrane transport	2.48E-02
150	GO:0010051: xylem and phloem pattern formation	2.48E-02
151	GO:0048653: anther development	2.48E-02
152	GO:0006520: cellular amino acid metabolic process	2.62E-02
153	GO:0010154: fruit development	2.62E-02
154	GO:0010197: polar nucleus fusion	2.62E-02
155	GO:0009741: response to brassinosteroid	2.62E-02
156	GO:0010268: brassinosteroid homeostasis	2.62E-02
157	GO:0009793: embryo development ending in seed dormancy	2.71E-02
158	GO:0009646: response to absence of light	2.76E-02
159	GO:0009791: post-embryonic development	2.90E-02
160	GO:0048825: cotyledon development	2.90E-02
161	GO:0042744: hydrogen peroxide catabolic process	3.01E-02
162	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.04E-02
163	GO:0071554: cell wall organization or biogenesis	3.04E-02
164	GO:0016132: brassinosteroid biosynthetic process	3.04E-02
165	GO:0009790: embryo development	3.09E-02
166	GO:0016032: viral process	3.19E-02
167	GO:0048235: pollen sperm cell differentiation	3.19E-02
168	GO:0006633: fatty acid biosynthetic process	3.32E-02
169	GO:0030163: protein catabolic process	3.33E-02
170	GO:0005975: carbohydrate metabolic process	3.39E-02
171	GO:0016125: sterol metabolic process	3.49E-02
172	GO:0001666: response to hypoxia	3.95E-02
173	GO:0010027: thylakoid membrane organization	3.95E-02
174	GO:0009739: response to gibberellin	4.08E-02
175	GO:0042128: nitrate assimilation	4.27E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
3	GO:0051721: protein phosphatase 2A binding	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0042903: tubulin deacetylase activity	0.00E+00
6	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
7	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
8	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
9	GO:0043014: alpha-tubulin binding	0.00E+00
10	GO:0004823: leucine-tRNA ligase activity	0.00E+00
11	GO:0008465: glycerate dehydrogenase activity	0.00E+00
12	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
13	GO:1990534: thermospermine oxidase activity	0.00E+00
14	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
15	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
16	GO:0005528: FK506 binding	1.30E-09
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.84E-06
18	GO:0051777: ent-kaurenoate oxidase activity	3.04E-04
19	GO:0004856: xylulokinase activity	3.04E-04
20	GO:0008568: microtubule-severing ATPase activity	3.04E-04
21	GO:0045485: omega-6 fatty acid desaturase activity	3.04E-04
22	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.04E-04
23	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	3.04E-04
24	GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	3.04E-04
25	GO:0015194: L-serine transmembrane transporter activity	3.04E-04
26	GO:0005381: iron ion transmembrane transporter activity	5.40E-04
27	GO:0015929: hexosaminidase activity	6.66E-04
28	GO:0004563: beta-N-acetylhexosaminidase activity	6.66E-04
29	GO:0008728: GTP diphosphokinase activity	6.66E-04
30	GO:0015180: L-alanine transmembrane transporter activity	6.66E-04
31	GO:0050017: L-3-cyanoalanine synthase activity	6.66E-04
32	GO:0047746: chlorophyllase activity	6.66E-04
33	GO:0004618: phosphoglycerate kinase activity	6.66E-04
34	GO:0003839: gamma-glutamylcyclotransferase activity	6.66E-04
35	GO:0008266: poly(U) RNA binding	1.06E-03
36	GO:0002161: aminoacyl-tRNA editing activity	1.08E-03
37	GO:0004148: dihydrolipoyl dehydrogenase activity	1.08E-03
38	GO:0015193: L-proline transmembrane transporter activity	1.08E-03
39	GO:0030267: glyoxylate reductase (NADP) activity	1.08E-03
40	GO:0016805: dipeptidase activity	1.08E-03
41	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.08E-03
42	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.08E-03
43	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	1.08E-03
44	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.08E-03
45	GO:0004180: carboxypeptidase activity	1.08E-03
46	GO:0016787: hydrolase activity	1.09E-03
47	GO:0048487: beta-tubulin binding	1.55E-03
48	GO:0015186: L-glutamine transmembrane transporter activity	1.55E-03
49	GO:0003878: ATP citrate synthase activity	1.55E-03
50	GO:0019201: nucleotide kinase activity	1.55E-03
51	GO:0015175: neutral amino acid transmembrane transporter activity	1.55E-03
52	GO:0015079: potassium ion transmembrane transporter activity	1.60E-03
53	GO:0005313: L-glutamate transmembrane transporter activity	2.07E-03
54	GO:0001053: plastid sigma factor activity	2.07E-03
55	GO:0010011: auxin binding	2.07E-03
56	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.07E-03
57	GO:0008453: alanine-glyoxylate transaminase activity	2.07E-03
58	GO:0016987: sigma factor activity	2.07E-03
59	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.65E-03
60	GO:0017137: Rab GTPase binding	2.65E-03
61	GO:0042578: phosphoric ester hydrolase activity	3.27E-03
62	GO:2001070: starch binding	3.27E-03
63	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.27E-03
64	GO:0004332: fructose-bisphosphate aldolase activity	3.27E-03
65	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.93E-03
66	GO:0004017: adenylate kinase activity	3.93E-03
67	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.93E-03
68	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.93E-03
69	GO:0004559: alpha-mannosidase activity	3.93E-03
70	GO:0004124: cysteine synthase activity	3.93E-03
71	GO:0004033: aldo-keto reductase (NADP) activity	5.39E-03
72	GO:0043022: ribosome binding	5.39E-03
73	GO:0016829: lyase activity	5.58E-03
74	GO:0016301: kinase activity	5.65E-03
75	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	6.18E-03
76	GO:0008236: serine-type peptidase activity	6.36E-03
77	GO:0005384: manganese ion transmembrane transporter activity	7.87E-03
78	GO:0047617: acyl-CoA hydrolase activity	7.87E-03
79	GO:0005524: ATP binding	8.72E-03
80	GO:0016491: oxidoreductase activity	9.25E-03
81	GO:0042802: identical protein binding	1.03E-02
82	GO:0004565: beta-galactosidase activity	1.17E-02
83	GO:0008081: phosphoric diester hydrolase activity	1.17E-02
84	GO:0015095: magnesium ion transmembrane transporter activity	1.17E-02
85	GO:0035091: phosphatidylinositol binding	1.19E-02
86	GO:0015293: symporter activity	1.23E-02
87	GO:0008131: primary amine oxidase activity	1.27E-02
88	GO:0003774: motor activity	1.27E-02
89	GO:0051287: NAD binding	1.33E-02
90	GO:0016788: hydrolase activity, acting on ester bonds	1.36E-02
91	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.48E-02
92	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.49E-02
93	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.49E-02
94	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.49E-02
95	GO:0016298: lipase activity	1.53E-02
96	GO:0004407: histone deacetylase activity	1.60E-02
97	GO:0033612: receptor serine/threonine kinase binding	1.84E-02
98	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.84E-02
99	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.96E-02
100	GO:0030570: pectate lyase activity	2.09E-02
101	GO:0004812: aminoacyl-tRNA ligase activity	2.35E-02
102	GO:0019843: rRNA binding	2.65E-02
103	GO:0050662: coenzyme binding	2.76E-02
104	GO:0003723: RNA binding	2.78E-02
105	GO:0004252: serine-type endopeptidase activity	2.94E-02
106	GO:0004518: nuclease activity	3.19E-02
107	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.40E-02
108	GO:0016413: O-acetyltransferase activity	3.79E-02
109	GO:0008017: microtubule binding	3.82E-02
110	GO:0015250: water channel activity	3.95E-02
111	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.27E-02
112	GO:0004683: calmodulin-dependent protein kinase activity	4.44E-02
113	GO:0004674: protein serine/threonine kinase activity	4.84E-02
114	GO:0015238: drug transmembrane transporter activity	4.94E-02
115	GO:0005096: GTPase activator activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009571: proplastid stroma	0.00E+00
3	GO:0009507: chloroplast	1.83E-20
4	GO:0009570: chloroplast stroma	5.11E-14
5	GO:0009543: chloroplast thylakoid lumen	1.17E-10
6	GO:0009535: chloroplast thylakoid membrane	3.29E-10
7	GO:0009534: chloroplast thylakoid	3.65E-08
8	GO:0009941: chloroplast envelope	1.23E-05
9	GO:0031977: thylakoid lumen	1.71E-05
10	GO:0009579: thylakoid	2.19E-05
11	GO:0000428: DNA-directed RNA polymerase complex	3.04E-04
12	GO:0009344: nitrite reductase complex [NAD(P)H]	3.04E-04
13	GO:0005886: plasma membrane	7.91E-04
14	GO:0030095: chloroplast photosystem II	1.06E-03
15	GO:0009346: citrate lyase complex	1.55E-03
16	GO:0048046: apoplast	1.61E-03
17	GO:0009533: chloroplast stromal thylakoid	4.64E-03
18	GO:0030529: intracellular ribonucleoprotein complex	5.13E-03
19	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.18E-03
20	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.01E-03
21	GO:0008180: COP9 signalosome	7.01E-03
22	GO:0016459: myosin complex	8.77E-03
23	GO:0055028: cortical microtubule	8.77E-03
24	GO:0032040: small-subunit processome	1.07E-02
25	GO:0030659: cytoplasmic vesicle membrane	1.27E-02
26	GO:0009654: photosystem II oxygen evolving complex	1.72E-02
27	GO:0009532: plastid stroma	1.84E-02
28	GO:0009505: plant-type cell wall	2.46E-02
29	GO:0010287: plastoglobule	2.51E-02
30	GO:0019898: extrinsic component of membrane	2.90E-02
31	GO:0005759: mitochondrial matrix	3.32E-02
32	GO:0009295: nucleoid	3.64E-02
33	GO:0010319: stromule	3.64E-02
34	GO:0019005: SCF ubiquitin ligase complex	4.77E-02