GO Enrichment Analysis of Co-expressed Genes with
AT4G22890
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 3 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 4 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 5 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 6 | GO:0017038: protein import | 0.00E+00 |
| 7 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 8 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 9 | GO:0006000: fructose metabolic process | 9.39E-09 |
| 10 | GO:0010205: photoinhibition | 8.20E-08 |
| 11 | GO:0045038: protein import into chloroplast thylakoid membrane | 3.06E-07 |
| 12 | GO:0006094: gluconeogenesis | 3.36E-07 |
| 13 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.77E-06 |
| 14 | GO:0006002: fructose 6-phosphate metabolic process | 3.84E-06 |
| 15 | GO:0071482: cellular response to light stimulus | 3.84E-06 |
| 16 | GO:0010206: photosystem II repair | 5.40E-06 |
| 17 | GO:0009773: photosynthetic electron transport in photosystem I | 1.26E-05 |
| 18 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.50E-05 |
| 19 | GO:0019253: reductive pentose-phosphate cycle | 2.45E-05 |
| 20 | GO:0015994: chlorophyll metabolic process | 2.77E-05 |
| 21 | GO:0042549: photosystem II stabilization | 6.61E-05 |
| 22 | GO:0009772: photosynthetic electron transport in photosystem II | 1.22E-04 |
| 23 | GO:0006605: protein targeting | 1.56E-04 |
| 24 | GO:0015969: guanosine tetraphosphate metabolic process | 1.93E-04 |
| 25 | GO:0019646: aerobic electron transport chain | 1.93E-04 |
| 26 | GO:0000476: maturation of 4.5S rRNA | 1.93E-04 |
| 27 | GO:0000967: rRNA 5'-end processing | 1.93E-04 |
| 28 | GO:0010480: microsporocyte differentiation | 1.93E-04 |
| 29 | GO:0031338: regulation of vesicle fusion | 1.93E-04 |
| 30 | GO:0000481: maturation of 5S rRNA | 1.93E-04 |
| 31 | GO:0043609: regulation of carbon utilization | 1.93E-04 |
| 32 | GO:0010028: xanthophyll cycle | 1.93E-04 |
| 33 | GO:0034337: RNA folding | 1.93E-04 |
| 34 | GO:0010450: inflorescence meristem growth | 1.93E-04 |
| 35 | GO:0000305: response to oxygen radical | 1.93E-04 |
| 36 | GO:0048507: meristem development | 2.36E-04 |
| 37 | GO:0010027: thylakoid membrane organization | 2.76E-04 |
| 38 | GO:0009735: response to cytokinin | 2.94E-04 |
| 39 | GO:0015979: photosynthesis | 3.55E-04 |
| 40 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.85E-04 |
| 41 | GO:0045454: cell redox homeostasis | 3.88E-04 |
| 42 | GO:0035304: regulation of protein dephosphorylation | 4.33E-04 |
| 43 | GO:1900871: chloroplast mRNA modification | 4.33E-04 |
| 44 | GO:0090342: regulation of cell aging | 4.33E-04 |
| 45 | GO:0016122: xanthophyll metabolic process | 4.33E-04 |
| 46 | GO:0034470: ncRNA processing | 4.33E-04 |
| 47 | GO:0005983: starch catabolic process | 4.41E-04 |
| 48 | GO:0005986: sucrose biosynthetic process | 5.01E-04 |
| 49 | GO:0010207: photosystem II assembly | 5.65E-04 |
| 50 | GO:0006013: mannose metabolic process | 7.06E-04 |
| 51 | GO:0006518: peptide metabolic process | 7.06E-04 |
| 52 | GO:0090630: activation of GTPase activity | 7.06E-04 |
| 53 | GO:0045165: cell fate commitment | 7.06E-04 |
| 54 | GO:0009067: aspartate family amino acid biosynthetic process | 1.01E-03 |
| 55 | GO:0051639: actin filament network formation | 1.01E-03 |
| 56 | GO:0006364: rRNA processing | 1.06E-03 |
| 57 | GO:0006096: glycolytic process | 1.30E-03 |
| 58 | GO:0051205: protein insertion into membrane | 1.34E-03 |
| 59 | GO:0006749: glutathione metabolic process | 1.34E-03 |
| 60 | GO:0010021: amylopectin biosynthetic process | 1.34E-03 |
| 61 | GO:0010109: regulation of photosynthesis | 1.34E-03 |
| 62 | GO:0051764: actin crosslink formation | 1.34E-03 |
| 63 | GO:0045727: positive regulation of translation | 1.34E-03 |
| 64 | GO:0016120: carotene biosynthetic process | 1.70E-03 |
| 65 | GO:0006656: phosphatidylcholine biosynthetic process | 1.70E-03 |
| 66 | GO:0043097: pyrimidine nucleoside salvage | 1.70E-03 |
| 67 | GO:0048497: maintenance of floral organ identity | 1.70E-03 |
| 68 | GO:0006461: protein complex assembly | 1.70E-03 |
| 69 | GO:1902183: regulation of shoot apical meristem development | 1.70E-03 |
| 70 | GO:0010158: abaxial cell fate specification | 1.70E-03 |
| 71 | GO:0019252: starch biosynthetic process | 1.73E-03 |
| 72 | GO:0055114: oxidation-reduction process | 1.99E-03 |
| 73 | GO:0009913: epidermal cell differentiation | 2.10E-03 |
| 74 | GO:0006206: pyrimidine nucleobase metabolic process | 2.10E-03 |
| 75 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.10E-03 |
| 76 | GO:0010256: endomembrane system organization | 2.10E-03 |
| 77 | GO:0000470: maturation of LSU-rRNA | 2.10E-03 |
| 78 | GO:0030163: protein catabolic process | 2.11E-03 |
| 79 | GO:0042372: phylloquinone biosynthetic process | 2.52E-03 |
| 80 | GO:0009942: longitudinal axis specification | 2.52E-03 |
| 81 | GO:0009854: oxidative photosynthetic carbon pathway | 2.52E-03 |
| 82 | GO:0009088: threonine biosynthetic process | 2.52E-03 |
| 83 | GO:0048437: floral organ development | 2.96E-03 |
| 84 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.96E-03 |
| 85 | GO:0010196: nonphotochemical quenching | 2.96E-03 |
| 86 | GO:0008152: metabolic process | 3.12E-03 |
| 87 | GO:0005978: glycogen biosynthetic process | 3.43E-03 |
| 88 | GO:0032508: DNA duplex unwinding | 3.43E-03 |
| 89 | GO:0010492: maintenance of shoot apical meristem identity | 3.43E-03 |
| 90 | GO:0048564: photosystem I assembly | 3.43E-03 |
| 91 | GO:0009657: plastid organization | 3.93E-03 |
| 92 | GO:0032544: plastid translation | 3.93E-03 |
| 93 | GO:0010093: specification of floral organ identity | 3.93E-03 |
| 94 | GO:0009853: photorespiration | 4.40E-03 |
| 95 | GO:0006098: pentose-phosphate shunt | 4.44E-03 |
| 96 | GO:2000024: regulation of leaf development | 4.44E-03 |
| 97 | GO:0000373: Group II intron splicing | 4.44E-03 |
| 98 | GO:0006535: cysteine biosynthetic process from serine | 5.55E-03 |
| 99 | GO:0009658: chloroplast organization | 5.73E-03 |
| 100 | GO:0019684: photosynthesis, light reaction | 6.13E-03 |
| 101 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.13E-03 |
| 102 | GO:0009750: response to fructose | 6.13E-03 |
| 103 | GO:0048229: gametophyte development | 6.13E-03 |
| 104 | GO:0010102: lateral root morphogenesis | 7.36E-03 |
| 105 | GO:0018107: peptidyl-threonine phosphorylation | 7.36E-03 |
| 106 | GO:0009718: anthocyanin-containing compound biosynthetic process | 7.36E-03 |
| 107 | GO:0010075: regulation of meristem growth | 7.36E-03 |
| 108 | GO:0009767: photosynthetic electron transport chain | 7.36E-03 |
| 109 | GO:0009933: meristem structural organization | 8.01E-03 |
| 110 | GO:0009934: regulation of meristem structural organization | 8.01E-03 |
| 111 | GO:0005985: sucrose metabolic process | 8.67E-03 |
| 112 | GO:0009409: response to cold | 9.02E-03 |
| 113 | GO:0034976: response to endoplasmic reticulum stress | 9.35E-03 |
| 114 | GO:0006636: unsaturated fatty acid biosynthetic process | 9.35E-03 |
| 115 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.01E-02 |
| 116 | GO:0051017: actin filament bundle assembly | 1.01E-02 |
| 117 | GO:0019344: cysteine biosynthetic process | 1.01E-02 |
| 118 | GO:0006810: transport | 1.04E-02 |
| 119 | GO:0016575: histone deacetylation | 1.08E-02 |
| 120 | GO:0018105: peptidyl-serine phosphorylation | 1.12E-02 |
| 121 | GO:0061077: chaperone-mediated protein folding | 1.15E-02 |
| 122 | GO:0009686: gibberellin biosynthetic process | 1.31E-02 |
| 123 | GO:0010051: xylem and phloem pattern formation | 1.55E-02 |
| 124 | GO:0048653: anther development | 1.55E-02 |
| 125 | GO:0042631: cellular response to water deprivation | 1.55E-02 |
| 126 | GO:0010154: fruit development | 1.63E-02 |
| 127 | GO:0010305: leaf vascular tissue pattern formation | 1.63E-02 |
| 128 | GO:0010268: brassinosteroid homeostasis | 1.63E-02 |
| 129 | GO:0009646: response to absence of light | 1.72E-02 |
| 130 | GO:0048825: cotyledon development | 1.81E-02 |
| 131 | GO:0007623: circadian rhythm | 1.89E-02 |
| 132 | GO:0016132: brassinosteroid biosynthetic process | 1.90E-02 |
| 133 | GO:0016032: viral process | 1.99E-02 |
| 134 | GO:0010090: trichome morphogenesis | 2.08E-02 |
| 135 | GO:0016125: sterol metabolic process | 2.18E-02 |
| 136 | GO:0071805: potassium ion transmembrane transport | 2.27E-02 |
| 137 | GO:0001666: response to hypoxia | 2.47E-02 |
| 138 | GO:0009416: response to light stimulus | 2.55E-02 |
| 139 | GO:0015995: chlorophyll biosynthetic process | 2.77E-02 |
| 140 | GO:0016311: dephosphorylation | 2.88E-02 |
| 141 | GO:0009817: defense response to fungus, incompatible interaction | 2.98E-02 |
| 142 | GO:0042254: ribosome biogenesis | 2.98E-02 |
| 143 | GO:0006499: N-terminal protein myristoylation | 3.20E-02 |
| 144 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.74E-02 |
| 145 | GO:0046777: protein autophosphorylation | 3.87E-02 |
| 146 | GO:0006631: fatty acid metabolic process | 3.99E-02 |
| 147 | GO:0006886: intracellular protein transport | 4.46E-02 |
| 148 | GO:0009644: response to high light intensity | 4.47E-02 |
| 149 | GO:0006855: drug transmembrane transport | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 2 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 3 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 4 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 5 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 6 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 7 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 8 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 9 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 10 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 11 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 12 | GO:0008465: glycerate dehydrogenase activity | 0.00E+00 |
| 13 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 14 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.77E-06 |
| 15 | GO:0008266: poly(U) RNA binding | 2.45E-05 |
| 16 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 2.77E-05 |
| 17 | GO:0005528: FK506 binding | 4.21E-05 |
| 18 | GO:2001070: starch binding | 6.61E-05 |
| 19 | GO:0004332: fructose-bisphosphate aldolase activity | 6.61E-05 |
| 20 | GO:0050308: sugar-phosphatase activity | 1.93E-04 |
| 21 | GO:0010242: oxygen evolving activity | 1.93E-04 |
| 22 | GO:0051777: ent-kaurenoate oxidase activity | 1.93E-04 |
| 23 | GO:0004856: xylulokinase activity | 1.93E-04 |
| 24 | GO:0045485: omega-6 fatty acid desaturase activity | 1.93E-04 |
| 25 | GO:0019203: carbohydrate phosphatase activity | 1.93E-04 |
| 26 | GO:0008728: GTP diphosphokinase activity | 4.33E-04 |
| 27 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 4.33E-04 |
| 28 | GO:0050017: L-3-cyanoalanine synthase activity | 4.33E-04 |
| 29 | GO:0004362: glutathione-disulfide reductase activity | 4.33E-04 |
| 30 | GO:0047746: chlorophyllase activity | 4.33E-04 |
| 31 | GO:0016868: intramolecular transferase activity, phosphotransferases | 4.33E-04 |
| 32 | GO:0004618: phosphoglycerate kinase activity | 4.33E-04 |
| 33 | GO:0033201: alpha-1,4-glucan synthase activity | 4.33E-04 |
| 34 | GO:0016787: hydrolase activity | 6.35E-04 |
| 35 | GO:0004373: glycogen (starch) synthase activity | 7.06E-04 |
| 36 | GO:0004148: dihydrolipoyl dehydrogenase activity | 7.06E-04 |
| 37 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 7.06E-04 |
| 38 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 7.06E-04 |
| 39 | GO:0015079: potassium ion transmembrane transporter activity | 8.55E-04 |
| 40 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.88E-04 |
| 41 | GO:0048487: beta-tubulin binding | 1.01E-03 |
| 42 | GO:0004072: aspartate kinase activity | 1.01E-03 |
| 43 | GO:0019201: nucleotide kinase activity | 1.01E-03 |
| 44 | GO:0009011: starch synthase activity | 1.34E-03 |
| 45 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 1.34E-03 |
| 46 | GO:0008453: alanine-glyoxylate transaminase activity | 1.34E-03 |
| 47 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.70E-03 |
| 48 | GO:0017137: Rab GTPase binding | 1.70E-03 |
| 49 | GO:0048038: quinone binding | 1.85E-03 |
| 50 | GO:0042578: phosphoric ester hydrolase activity | 2.10E-03 |
| 51 | GO:0016491: oxidoreductase activity | 2.51E-03 |
| 52 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.52E-03 |
| 53 | GO:0004017: adenylate kinase activity | 2.52E-03 |
| 54 | GO:0004849: uridine kinase activity | 2.52E-03 |
| 55 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.52E-03 |
| 56 | GO:0004559: alpha-mannosidase activity | 2.52E-03 |
| 57 | GO:0004124: cysteine synthase activity | 2.52E-03 |
| 58 | GO:0005524: ATP binding | 2.68E-03 |
| 59 | GO:0008236: serine-type peptidase activity | 3.30E-03 |
| 60 | GO:0043022: ribosome binding | 3.43E-03 |
| 61 | GO:0004222: metalloendopeptidase activity | 3.83E-03 |
| 62 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 3.93E-03 |
| 63 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 4.44E-03 |
| 64 | GO:0015386: potassium:proton antiporter activity | 6.13E-03 |
| 65 | GO:0050660: flavin adenine dinucleotide binding | 6.90E-03 |
| 66 | GO:0004022: alcohol dehydrogenase (NAD) activity | 7.36E-03 |
| 67 | GO:0003954: NADH dehydrogenase activity | 1.01E-02 |
| 68 | GO:0004407: histone deacetylase activity | 1.01E-02 |
| 69 | GO:0004176: ATP-dependent peptidase activity | 1.15E-02 |
| 70 | GO:0033612: receptor serine/threonine kinase binding | 1.15E-02 |
| 71 | GO:0019843: rRNA binding | 1.36E-02 |
| 72 | GO:0003756: protein disulfide isomerase activity | 1.39E-02 |
| 73 | GO:0004252: serine-type endopeptidase activity | 1.52E-02 |
| 74 | GO:0046872: metal ion binding | 1.58E-02 |
| 75 | GO:0016301: kinase activity | 1.62E-02 |
| 76 | GO:0005509: calcium ion binding | 1.65E-02 |
| 77 | GO:0050662: coenzyme binding | 1.72E-02 |
| 78 | GO:0051015: actin filament binding | 2.08E-02 |
| 79 | GO:0003743: translation initiation factor activity | 2.21E-02 |
| 80 | GO:0008237: metallopeptidase activity | 2.27E-02 |
| 81 | GO:0016597: amino acid binding | 2.37E-02 |
| 82 | GO:0042802: identical protein binding | 2.40E-02 |
| 83 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 2.67E-02 |
| 84 | GO:0004721: phosphoprotein phosphatase activity | 2.77E-02 |
| 85 | GO:0004683: calmodulin-dependent protein kinase activity | 2.77E-02 |
| 86 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.98E-02 |
| 87 | GO:0015238: drug transmembrane transporter activity | 3.09E-02 |
| 88 | GO:0005096: GTPase activator activity | 3.09E-02 |
| 89 | GO:0003723: RNA binding | 3.22E-02 |
| 90 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.31E-02 |
| 91 | GO:0050897: cobalt ion binding | 3.31E-02 |
| 92 | GO:0030145: manganese ion binding | 3.31E-02 |
| 93 | GO:0003746: translation elongation factor activity | 3.53E-02 |
| 94 | GO:0050661: NADP binding | 3.87E-02 |
| 95 | GO:0043621: protein self-association | 4.47E-02 |
| 96 | GO:0005525: GTP binding | 4.72E-02 |
| 97 | GO:0005515: protein binding | 4.78E-02 |
| 98 | GO:0051287: NAD binding | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 8.49E-41 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.21E-24 |
| 4 | GO:0009534: chloroplast thylakoid | 1.33E-24 |
| 5 | GO:0009570: chloroplast stroma | 6.82E-21 |
| 6 | GO:0009941: chloroplast envelope | 4.08E-17 |
| 7 | GO:0009579: thylakoid | 3.18E-12 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 1.43E-10 |
| 9 | GO:0030095: chloroplast photosystem II | 5.27E-09 |
| 10 | GO:0009533: chloroplast stromal thylakoid | 1.72E-06 |
| 11 | GO:0031977: thylakoid lumen | 3.33E-06 |
| 12 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.40E-06 |
| 13 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.93E-04 |
| 14 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 1.95E-04 |
| 15 | GO:0048046: apoplast | 2.35E-04 |
| 16 | GO:0010319: stromule | 2.36E-04 |
| 17 | GO:0010287: plastoglobule | 3.08E-04 |
| 18 | GO:0031304: intrinsic component of mitochondrial inner membrane | 4.33E-04 |
| 19 | GO:0080085: signal recognition particle, chloroplast targeting | 4.33E-04 |
| 20 | GO:0042651: thylakoid membrane | 8.55E-04 |
| 21 | GO:0009654: photosystem II oxygen evolving complex | 8.55E-04 |
| 22 | GO:0032432: actin filament bundle | 1.01E-03 |
| 23 | GO:0009523: photosystem II | 1.73E-03 |
| 24 | GO:0019898: extrinsic component of membrane | 1.73E-03 |
| 25 | GO:0009538: photosystem I reaction center | 3.43E-03 |
| 26 | GO:0009501: amyloplast | 3.43E-03 |
| 27 | GO:0042644: chloroplast nucleoid | 4.44E-03 |
| 28 | GO:0005884: actin filament | 6.13E-03 |
| 29 | GO:0032040: small-subunit processome | 6.73E-03 |
| 30 | GO:0009508: plastid chromosome | 7.36E-03 |
| 31 | GO:0009706: chloroplast inner membrane | 1.09E-02 |
| 32 | GO:0009295: nucleoid | 2.27E-02 |
| 33 | GO:0030529: intracellular ribonucleoprotein complex | 2.47E-02 |
| 34 | GO:0016020: membrane | 2.57E-02 |
| 35 | GO:0005777: peroxisome | 3.03E-02 |
| 36 | GO:0031969: chloroplast membrane | 3.62E-02 |