GO Enrichment Analysis of Co-expressed Genes with
AT4G22830
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 4 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 5 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 6 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 7 | GO:0006412: translation | 2.14E-12 |
| 8 | GO:0015979: photosynthesis | 2.85E-08 |
| 9 | GO:0009735: response to cytokinin | 8.94E-08 |
| 10 | GO:0042254: ribosome biogenesis | 9.22E-08 |
| 11 | GO:0032544: plastid translation | 1.48E-07 |
| 12 | GO:0009773: photosynthetic electron transport in photosystem I | 7.68E-07 |
| 13 | GO:0010207: photosystem II assembly | 1.94E-06 |
| 14 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.22E-06 |
| 15 | GO:0000413: protein peptidyl-prolyl isomerization | 1.60E-05 |
| 16 | GO:0010206: photosystem II repair | 1.63E-05 |
| 17 | GO:0006546: glycine catabolic process | 6.01E-05 |
| 18 | GO:0015995: chlorophyll biosynthetic process | 8.16E-05 |
| 19 | GO:0018298: protein-chromophore linkage | 9.88E-05 |
| 20 | GO:0006810: transport | 1.09E-04 |
| 21 | GO:0000476: maturation of 4.5S rRNA | 3.04E-04 |
| 22 | GO:0000967: rRNA 5'-end processing | 3.04E-04 |
| 23 | GO:0043489: RNA stabilization | 3.04E-04 |
| 24 | GO:1904966: positive regulation of vitamin E biosynthetic process | 3.04E-04 |
| 25 | GO:0000481: maturation of 5S rRNA | 3.04E-04 |
| 26 | GO:1904964: positive regulation of phytol biosynthetic process | 3.04E-04 |
| 27 | GO:0034337: RNA folding | 3.04E-04 |
| 28 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 3.04E-04 |
| 29 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 6.66E-04 |
| 30 | GO:0034755: iron ion transmembrane transport | 6.66E-04 |
| 31 | GO:0018026: peptidyl-lysine monomethylation | 6.66E-04 |
| 32 | GO:0010270: photosystem II oxygen evolving complex assembly | 6.66E-04 |
| 33 | GO:0034470: ncRNA processing | 6.66E-04 |
| 34 | GO:0019684: photosynthesis, light reaction | 7.28E-04 |
| 35 | GO:0009767: photosynthetic electron transport chain | 9.40E-04 |
| 36 | GO:0009409: response to cold | 1.05E-03 |
| 37 | GO:0006518: peptide metabolic process | 1.08E-03 |
| 38 | GO:0080170: hydrogen peroxide transmembrane transport | 1.55E-03 |
| 39 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.55E-03 |
| 40 | GO:0009226: nucleotide-sugar biosynthetic process | 1.55E-03 |
| 41 | GO:2001141: regulation of RNA biosynthetic process | 1.55E-03 |
| 42 | GO:1902476: chloride transmembrane transport | 1.55E-03 |
| 43 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.60E-03 |
| 44 | GO:0061077: chaperone-mediated protein folding | 1.76E-03 |
| 45 | GO:0045727: positive regulation of translation | 2.07E-03 |
| 46 | GO:0015994: chlorophyll metabolic process | 2.07E-03 |
| 47 | GO:0030104: water homeostasis | 2.07E-03 |
| 48 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.07E-03 |
| 49 | GO:0006457: protein folding | 2.24E-03 |
| 50 | GO:0009247: glycolipid biosynthetic process | 2.65E-03 |
| 51 | GO:0009658: chloroplast organization | 2.92E-03 |
| 52 | GO:0016554: cytidine to uridine editing | 3.27E-03 |
| 53 | GO:0006828: manganese ion transport | 3.27E-03 |
| 54 | GO:0032973: amino acid export | 3.27E-03 |
| 55 | GO:0000741: karyogamy | 3.27E-03 |
| 56 | GO:0010190: cytochrome b6f complex assembly | 3.27E-03 |
| 57 | GO:0042549: photosystem II stabilization | 3.27E-03 |
| 58 | GO:0000470: maturation of LSU-rRNA | 3.27E-03 |
| 59 | GO:0042026: protein refolding | 3.93E-03 |
| 60 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.93E-03 |
| 61 | GO:0006458: 'de novo' protein folding | 3.93E-03 |
| 62 | GO:0010019: chloroplast-nucleus signaling pathway | 3.93E-03 |
| 63 | GO:0010555: response to mannitol | 3.93E-03 |
| 64 | GO:0006821: chloride transport | 4.64E-03 |
| 65 | GO:0009645: response to low light intensity stimulus | 4.64E-03 |
| 66 | GO:0043090: amino acid import | 4.64E-03 |
| 67 | GO:0010027: thylakoid membrane organization | 5.13E-03 |
| 68 | GO:0009642: response to light intensity | 5.39E-03 |
| 69 | GO:0019375: galactolipid biosynthetic process | 5.39E-03 |
| 70 | GO:0032508: DNA duplex unwinding | 5.39E-03 |
| 71 | GO:0010492: maintenance of shoot apical meristem identity | 5.39E-03 |
| 72 | GO:0048564: photosystem I assembly | 5.39E-03 |
| 73 | GO:0006526: arginine biosynthetic process | 6.18E-03 |
| 74 | GO:0071482: cellular response to light stimulus | 6.18E-03 |
| 75 | GO:0032259: methylation | 6.87E-03 |
| 76 | GO:0009051: pentose-phosphate shunt, oxidative branch | 7.01E-03 |
| 77 | GO:0006098: pentose-phosphate shunt | 7.01E-03 |
| 78 | GO:0048507: meristem development | 7.01E-03 |
| 79 | GO:0009821: alkaloid biosynthetic process | 7.01E-03 |
| 80 | GO:0080144: amino acid homeostasis | 7.01E-03 |
| 81 | GO:0009451: RNA modification | 7.84E-03 |
| 82 | GO:1900865: chloroplast RNA modification | 7.87E-03 |
| 83 | GO:0010205: photoinhibition | 7.87E-03 |
| 84 | GO:0045087: innate immune response | 8.49E-03 |
| 85 | GO:0009637: response to blue light | 8.49E-03 |
| 86 | GO:0006816: calcium ion transport | 9.71E-03 |
| 87 | GO:0009089: lysine biosynthetic process via diaminopimelate | 9.71E-03 |
| 88 | GO:0043085: positive regulation of catalytic activity | 9.71E-03 |
| 89 | GO:0006879: cellular iron ion homeostasis | 9.71E-03 |
| 90 | GO:0006352: DNA-templated transcription, initiation | 9.71E-03 |
| 91 | GO:0018119: peptidyl-cysteine S-nitrosylation | 9.71E-03 |
| 92 | GO:0009793: embryo development ending in seed dormancy | 1.03E-02 |
| 93 | GO:0015706: nitrate transport | 1.07E-02 |
| 94 | GO:0010114: response to red light | 1.10E-02 |
| 95 | GO:0010628: positive regulation of gene expression | 1.17E-02 |
| 96 | GO:0006006: glucose metabolic process | 1.17E-02 |
| 97 | GO:0006094: gluconeogenesis | 1.17E-02 |
| 98 | GO:0009644: response to high light intensity | 1.19E-02 |
| 99 | GO:0019253: reductive pentose-phosphate cycle | 1.27E-02 |
| 100 | GO:0010167: response to nitrate | 1.38E-02 |
| 101 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.49E-02 |
| 102 | GO:0000027: ribosomal large subunit assembly | 1.60E-02 |
| 103 | GO:0019344: cysteine biosynthetic process | 1.60E-02 |
| 104 | GO:0042742: defense response to bacterium | 1.68E-02 |
| 105 | GO:0016575: histone deacetylation | 1.72E-02 |
| 106 | GO:0006418: tRNA aminoacylation for protein translation | 1.72E-02 |
| 107 | GO:0006096: glycolytic process | 1.75E-02 |
| 108 | GO:0019915: lipid storage | 1.84E-02 |
| 109 | GO:0006012: galactose metabolic process | 2.09E-02 |
| 110 | GO:0034220: ion transmembrane transport | 2.48E-02 |
| 111 | GO:0006520: cellular amino acid metabolic process | 2.62E-02 |
| 112 | GO:0010197: polar nucleus fusion | 2.62E-02 |
| 113 | GO:0042744: hydrogen peroxide catabolic process | 3.01E-02 |
| 114 | GO:0002229: defense response to oomycetes | 3.04E-02 |
| 115 | GO:0000302: response to reactive oxygen species | 3.04E-02 |
| 116 | GO:0009790: embryo development | 3.09E-02 |
| 117 | GO:0030163: protein catabolic process | 3.33E-02 |
| 118 | GO:0007623: circadian rhythm | 3.65E-02 |
| 119 | GO:0055114: oxidation-reduction process | 3.76E-02 |
| 120 | GO:0001666: response to hypoxia | 3.95E-02 |
| 121 | GO:0042128: nitrate assimilation | 4.27E-02 |
| 122 | GO:0048481: plant ovule development | 4.77E-02 |
| 123 | GO:0000160: phosphorelay signal transduction system | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 2 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 3 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 4 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 5 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 6 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 7 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 8 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 9 | GO:0019843: rRNA binding | 3.11E-23 |
| 10 | GO:0003735: structural constituent of ribosome | 1.03E-15 |
| 11 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 6.82E-14 |
| 12 | GO:0005528: FK506 binding | 1.30E-09 |
| 13 | GO:0008266: poly(U) RNA binding | 1.94E-06 |
| 14 | GO:0016168: chlorophyll binding | 6.66E-05 |
| 15 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.88E-04 |
| 16 | GO:0051920: peroxiredoxin activity | 1.88E-04 |
| 17 | GO:0019899: enzyme binding | 2.45E-04 |
| 18 | GO:0009671: nitrate:proton symporter activity | 3.04E-04 |
| 19 | GO:0045485: omega-6 fatty acid desaturase activity | 3.04E-04 |
| 20 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 3.04E-04 |
| 21 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 3.04E-04 |
| 22 | GO:0046906: tetrapyrrole binding | 3.04E-04 |
| 23 | GO:0016209: antioxidant activity | 3.09E-04 |
| 24 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 6.66E-04 |
| 25 | GO:0047746: chlorophyllase activity | 6.66E-04 |
| 26 | GO:0004618: phosphoglycerate kinase activity | 6.66E-04 |
| 27 | GO:0004047: aminomethyltransferase activity | 6.66E-04 |
| 28 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 6.66E-04 |
| 29 | GO:0002161: aminoacyl-tRNA editing activity | 1.08E-03 |
| 30 | GO:0004751: ribose-5-phosphate isomerase activity | 1.08E-03 |
| 31 | GO:0030267: glyoxylate reductase (NADP) activity | 1.08E-03 |
| 32 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 1.08E-03 |
| 33 | GO:0031409: pigment binding | 1.31E-03 |
| 34 | GO:0016851: magnesium chelatase activity | 1.55E-03 |
| 35 | GO:0035250: UDP-galactosyltransferase activity | 1.55E-03 |
| 36 | GO:0048487: beta-tubulin binding | 1.55E-03 |
| 37 | GO:0008097: 5S rRNA binding | 1.55E-03 |
| 38 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.55E-03 |
| 39 | GO:0016987: sigma factor activity | 2.07E-03 |
| 40 | GO:0043495: protein anchor | 2.07E-03 |
| 41 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 2.07E-03 |
| 42 | GO:0005253: anion channel activity | 2.07E-03 |
| 43 | GO:0016279: protein-lysine N-methyltransferase activity | 2.07E-03 |
| 44 | GO:0001053: plastid sigma factor activity | 2.07E-03 |
| 45 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 2.07E-03 |
| 46 | GO:0022891: substrate-specific transmembrane transporter activity | 2.10E-03 |
| 47 | GO:0008374: O-acyltransferase activity | 2.65E-03 |
| 48 | GO:0004601: peroxidase activity | 2.92E-03 |
| 49 | GO:0004130: cytochrome-c peroxidase activity | 3.27E-03 |
| 50 | GO:0008200: ion channel inhibitor activity | 3.27E-03 |
| 51 | GO:0005247: voltage-gated chloride channel activity | 3.27E-03 |
| 52 | GO:0004332: fructose-bisphosphate aldolase activity | 3.27E-03 |
| 53 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 3.93E-03 |
| 54 | GO:0005509: calcium ion binding | 4.61E-03 |
| 55 | GO:0004034: aldose 1-epimerase activity | 5.39E-03 |
| 56 | GO:0004033: aldo-keto reductase (NADP) activity | 5.39E-03 |
| 57 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 6.18E-03 |
| 58 | GO:0008236: serine-type peptidase activity | 6.36E-03 |
| 59 | GO:0005381: iron ion transmembrane transporter activity | 7.87E-03 |
| 60 | GO:0005384: manganese ion transmembrane transporter activity | 7.87E-03 |
| 61 | GO:0016844: strictosidine synthase activity | 7.87E-03 |
| 62 | GO:0015112: nitrate transmembrane transporter activity | 7.87E-03 |
| 63 | GO:0016787: hydrolase activity | 8.75E-03 |
| 64 | GO:0044183: protein binding involved in protein folding | 9.71E-03 |
| 65 | GO:0000049: tRNA binding | 1.07E-02 |
| 66 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.17E-02 |
| 67 | GO:0015095: magnesium ion transmembrane transporter activity | 1.17E-02 |
| 68 | GO:0031072: heat shock protein binding | 1.17E-02 |
| 69 | GO:0008168: methyltransferase activity | 1.27E-02 |
| 70 | GO:0003723: RNA binding | 1.27E-02 |
| 71 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.27E-02 |
| 72 | GO:0016788: hydrolase activity, acting on ester bonds | 1.36E-02 |
| 73 | GO:0004407: histone deacetylase activity | 1.60E-02 |
| 74 | GO:0043424: protein histidine kinase binding | 1.72E-02 |
| 75 | GO:0051082: unfolded protein binding | 2.11E-02 |
| 76 | GO:0003756: protein disulfide isomerase activity | 2.22E-02 |
| 77 | GO:0004812: aminoacyl-tRNA ligase activity | 2.35E-02 |
| 78 | GO:0016491: oxidoreductase activity | 2.68E-02 |
| 79 | GO:0050662: coenzyme binding | 2.76E-02 |
| 80 | GO:0016853: isomerase activity | 2.76E-02 |
| 81 | GO:0004252: serine-type endopeptidase activity | 2.94E-02 |
| 82 | GO:0009055: electron carrier activity | 3.11E-02 |
| 83 | GO:0004519: endonuclease activity | 3.16E-02 |
| 84 | GO:0003729: mRNA binding | 3.28E-02 |
| 85 | GO:0000156: phosphorelay response regulator activity | 3.33E-02 |
| 86 | GO:0008483: transaminase activity | 3.64E-02 |
| 87 | GO:0015250: water channel activity | 3.95E-02 |
| 88 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 4.60E-02 |
| 89 | GO:0015238: drug transmembrane transporter activity | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 4 | GO:0009571: proplastid stroma | 0.00E+00 |
| 5 | GO:0009507: chloroplast | 8.99E-77 |
| 6 | GO:0009570: chloroplast stroma | 3.48E-44 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 9.43E-43 |
| 8 | GO:0009941: chloroplast envelope | 3.18E-37 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 5.58E-36 |
| 10 | GO:0009534: chloroplast thylakoid | 2.96E-31 |
| 11 | GO:0009579: thylakoid | 4.12E-24 |
| 12 | GO:0031977: thylakoid lumen | 5.77E-18 |
| 13 | GO:0005840: ribosome | 5.70E-14 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 1.85E-09 |
| 15 | GO:0019898: extrinsic component of membrane | 2.34E-08 |
| 16 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.37E-07 |
| 17 | GO:0000311: plastid large ribosomal subunit | 1.07E-06 |
| 18 | GO:0030095: chloroplast photosystem II | 1.94E-06 |
| 19 | GO:0009533: chloroplast stromal thylakoid | 5.40E-06 |
| 20 | GO:0015934: large ribosomal subunit | 1.28E-04 |
| 21 | GO:0016020: membrane | 1.31E-04 |
| 22 | GO:0010287: plastoglobule | 1.32E-04 |
| 23 | GO:0009782: photosystem I antenna complex | 3.04E-04 |
| 24 | GO:0043674: columella | 3.04E-04 |
| 25 | GO:0009547: plastid ribosome | 3.04E-04 |
| 26 | GO:0010319: stromule | 5.53E-04 |
| 27 | GO:0000312: plastid small ribosomal subunit | 1.06E-03 |
| 28 | GO:0010007: magnesium chelatase complex | 1.08E-03 |
| 29 | GO:0030076: light-harvesting complex | 1.18E-03 |
| 30 | GO:0022626: cytosolic ribosome | 1.23E-03 |
| 31 | GO:0005960: glycine cleavage complex | 1.55E-03 |
| 32 | GO:0009522: photosystem I | 3.09E-03 |
| 33 | GO:0034707: chloride channel complex | 3.27E-03 |
| 34 | GO:0009523: photosystem II | 3.31E-03 |
| 35 | GO:0009706: chloroplast inner membrane | 3.79E-03 |
| 36 | GO:0031969: chloroplast membrane | 4.06E-03 |
| 37 | GO:0022625: cytosolic large ribosomal subunit | 4.38E-03 |
| 38 | GO:0042807: central vacuole | 4.64E-03 |
| 39 | GO:0030529: intracellular ribonucleoprotein complex | 5.13E-03 |
| 40 | GO:0032040: small-subunit processome | 1.07E-02 |
| 41 | GO:0048046: apoplast | 1.08E-02 |
| 42 | GO:0042651: thylakoid membrane | 1.72E-02 |
| 43 | GO:0015935: small ribosomal subunit | 1.84E-02 |
| 44 | GO:0016592: mediator complex | 3.19E-02 |
| 45 | GO:0009705: plant-type vacuole membrane | 3.65E-02 |
| 46 | GO:0022627: cytosolic small ribosomal subunit | 4.81E-02 |