GO Enrichment Analysis of Co-expressed Genes with
AT4G22010
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0060416: response to growth hormone | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 4 | GO:0006642: triglyceride mobilization | 0.00E+00 |
| 5 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
| 6 | GO:0032544: plastid translation | 5.28E-13 |
| 7 | GO:0006412: translation | 1.28E-06 |
| 8 | GO:0006782: protoporphyrinogen IX biosynthetic process | 8.00E-06 |
| 9 | GO:0015995: chlorophyll biosynthetic process | 1.83E-05 |
| 10 | GO:0010583: response to cyclopentenone | 1.54E-04 |
| 11 | GO:0042371: vitamin K biosynthetic process | 1.77E-04 |
| 12 | GO:0046166: glyceraldehyde-3-phosphate biosynthetic process | 1.77E-04 |
| 13 | GO:0006783: heme biosynthetic process | 2.09E-04 |
| 14 | GO:0010027: thylakoid membrane organization | 2.36E-04 |
| 15 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.51E-04 |
| 16 | GO:0010115: regulation of abscisic acid biosynthetic process | 4.01E-04 |
| 17 | GO:0080148: negative regulation of response to water deprivation | 4.01E-04 |
| 18 | GO:0071258: cellular response to gravity | 4.01E-04 |
| 19 | GO:0006695: cholesterol biosynthetic process | 4.01E-04 |
| 20 | GO:0006954: inflammatory response | 6.55E-04 |
| 21 | GO:0019563: glycerol catabolic process | 6.55E-04 |
| 22 | GO:0032504: multicellular organism reproduction | 6.55E-04 |
| 23 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 6.55E-04 |
| 24 | GO:0071705: nitrogen compound transport | 6.55E-04 |
| 25 | GO:0009658: chloroplast organization | 9.02E-04 |
| 26 | GO:0042254: ribosome biogenesis | 9.27E-04 |
| 27 | GO:0010731: protein glutathionylation | 9.34E-04 |
| 28 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 9.34E-04 |
| 29 | GO:2001141: regulation of RNA biosynthetic process | 9.34E-04 |
| 30 | GO:0006021: inositol biosynthetic process | 1.24E-03 |
| 31 | GO:0006808: regulation of nitrogen utilization | 1.24E-03 |
| 32 | GO:0071249: cellular response to nitrate | 1.24E-03 |
| 33 | GO:0006749: glutathione metabolic process | 1.24E-03 |
| 34 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.57E-03 |
| 35 | GO:0009247: glycolipid biosynthetic process | 1.57E-03 |
| 36 | GO:0009972: cytidine deamination | 1.94E-03 |
| 37 | GO:0006561: proline biosynthetic process | 1.94E-03 |
| 38 | GO:0010405: arabinogalactan protein metabolic process | 1.94E-03 |
| 39 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.94E-03 |
| 40 | GO:0046855: inositol phosphate dephosphorylation | 1.94E-03 |
| 41 | GO:0042372: phylloquinone biosynthetic process | 2.32E-03 |
| 42 | GO:0006694: steroid biosynthetic process | 2.32E-03 |
| 43 | GO:0048280: vesicle fusion with Golgi apparatus | 2.32E-03 |
| 44 | GO:0009854: oxidative photosynthetic carbon pathway | 2.32E-03 |
| 45 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 2.32E-03 |
| 46 | GO:0009955: adaxial/abaxial pattern specification | 2.32E-03 |
| 47 | GO:1901259: chloroplast rRNA processing | 2.32E-03 |
| 48 | GO:0040008: regulation of growth | 2.67E-03 |
| 49 | GO:0010444: guard mother cell differentiation | 2.74E-03 |
| 50 | GO:0009610: response to symbiotic fungus | 2.74E-03 |
| 51 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.74E-03 |
| 52 | GO:0050829: defense response to Gram-negative bacterium | 2.74E-03 |
| 53 | GO:0009690: cytokinin metabolic process | 3.17E-03 |
| 54 | GO:0006605: protein targeting | 3.17E-03 |
| 55 | GO:0019375: galactolipid biosynthetic process | 3.17E-03 |
| 56 | GO:0009704: de-etiolation | 3.17E-03 |
| 57 | GO:0007155: cell adhesion | 3.17E-03 |
| 58 | GO:0000160: phosphorelay signal transduction system | 3.25E-03 |
| 59 | GO:0009808: lignin metabolic process | 3.63E-03 |
| 60 | GO:0009932: cell tip growth | 3.63E-03 |
| 61 | GO:0071482: cellular response to light stimulus | 3.63E-03 |
| 62 | GO:0033384: geranyl diphosphate biosynthetic process | 4.10E-03 |
| 63 | GO:0000373: Group II intron splicing | 4.10E-03 |
| 64 | GO:0045337: farnesyl diphosphate biosynthetic process | 4.10E-03 |
| 65 | GO:0009735: response to cytokinin | 4.69E-03 |
| 66 | GO:0051707: response to other organism | 5.03E-03 |
| 67 | GO:0006535: cysteine biosynthetic process from serine | 5.11E-03 |
| 68 | GO:0009688: abscisic acid biosynthetic process | 5.11E-03 |
| 69 | GO:0006896: Golgi to vacuole transport | 5.11E-03 |
| 70 | GO:0009073: aromatic amino acid family biosynthetic process | 5.65E-03 |
| 71 | GO:0006352: DNA-templated transcription, initiation | 5.65E-03 |
| 72 | GO:0009750: response to fructose | 5.65E-03 |
| 73 | GO:0006415: translational termination | 5.65E-03 |
| 74 | GO:0015706: nitrate transport | 6.20E-03 |
| 75 | GO:0006790: sulfur compound metabolic process | 6.20E-03 |
| 76 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 6.77E-03 |
| 77 | GO:0009736: cytokinin-activated signaling pathway | 6.78E-03 |
| 78 | GO:0030036: actin cytoskeleton organization | 6.78E-03 |
| 79 | GO:0050826: response to freezing | 6.78E-03 |
| 80 | GO:0006094: gluconeogenesis | 6.78E-03 |
| 81 | GO:0051603: proteolysis involved in cellular protein catabolic process | 7.02E-03 |
| 82 | GO:0019253: reductive pentose-phosphate cycle | 7.37E-03 |
| 83 | GO:0019853: L-ascorbic acid biosynthetic process | 7.98E-03 |
| 84 | GO:0046854: phosphatidylinositol phosphorylation | 7.98E-03 |
| 85 | GO:0010167: response to nitrate | 7.98E-03 |
| 86 | GO:0006096: glycolytic process | 8.02E-03 |
| 87 | GO:0005992: trehalose biosynthetic process | 9.26E-03 |
| 88 | GO:0019344: cysteine biosynthetic process | 9.26E-03 |
| 89 | GO:0009306: protein secretion | 1.27E-02 |
| 90 | GO:0019722: calcium-mediated signaling | 1.27E-02 |
| 91 | GO:0042147: retrograde transport, endosome to Golgi | 1.35E-02 |
| 92 | GO:0009790: embryo development | 1.42E-02 |
| 93 | GO:0000271: polysaccharide biosynthetic process | 1.43E-02 |
| 94 | GO:0080022: primary root development | 1.43E-02 |
| 95 | GO:0042335: cuticle development | 1.43E-02 |
| 96 | GO:0010182: sugar mediated signaling pathway | 1.50E-02 |
| 97 | GO:0045489: pectin biosynthetic process | 1.50E-02 |
| 98 | GO:0006623: protein targeting to vacuole | 1.66E-02 |
| 99 | GO:0006891: intra-Golgi vesicle-mediated transport | 1.75E-02 |
| 100 | GO:0016132: brassinosteroid biosynthetic process | 1.75E-02 |
| 101 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.75E-02 |
| 102 | GO:0032502: developmental process | 1.83E-02 |
| 103 | GO:1901657: glycosyl compound metabolic process | 1.91E-02 |
| 104 | GO:0009567: double fertilization forming a zygote and endosperm | 2.00E-02 |
| 105 | GO:0007267: cell-cell signaling | 2.09E-02 |
| 106 | GO:0000910: cytokinesis | 2.18E-02 |
| 107 | GO:0006888: ER to Golgi vesicle-mediated transport | 2.55E-02 |
| 108 | GO:0016311: dephosphorylation | 2.64E-02 |
| 109 | GO:0009860: pollen tube growth | 2.80E-02 |
| 110 | GO:0007049: cell cycle | 2.90E-02 |
| 111 | GO:0009407: toxin catabolic process | 2.94E-02 |
| 112 | GO:0009834: plant-type secondary cell wall biogenesis | 2.94E-02 |
| 113 | GO:0048527: lateral root development | 3.04E-02 |
| 114 | GO:0080167: response to karrikin | 3.22E-02 |
| 115 | GO:0016051: carbohydrate biosynthetic process | 3.24E-02 |
| 116 | GO:0009637: response to blue light | 3.24E-02 |
| 117 | GO:0009853: photorespiration | 3.24E-02 |
| 118 | GO:0030001: metal ion transport | 3.56E-02 |
| 119 | GO:0006839: mitochondrial transport | 3.56E-02 |
| 120 | GO:0015979: photosynthesis | 3.67E-02 |
| 121 | GO:0006631: fatty acid metabolic process | 3.67E-02 |
| 122 | GO:0010114: response to red light | 3.88E-02 |
| 123 | GO:0008643: carbohydrate transport | 4.11E-02 |
| 124 | GO:0006869: lipid transport | 4.21E-02 |
| 125 | GO:0009636: response to toxic substance | 4.22E-02 |
| 126 | GO:0016042: lipid catabolic process | 4.60E-02 |
| 127 | GO:0006397: mRNA processing | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0061711: N(6)-L-threonylcarbamoyladenine synthase | 0.00E+00 |
| 3 | GO:0047661: amino-acid racemase activity | 0.00E+00 |
| 4 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 5 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 6 | GO:0005048: signal sequence binding | 0.00E+00 |
| 7 | GO:0050614: delta24-sterol reductase activity | 0.00E+00 |
| 8 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 9 | GO:0019843: rRNA binding | 2.62E-09 |
| 10 | GO:0003735: structural constituent of ribosome | 2.67E-06 |
| 11 | GO:0009374: biotin binding | 1.77E-04 |
| 12 | GO:0004328: formamidase activity | 1.77E-04 |
| 13 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.77E-04 |
| 14 | GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity | 1.77E-04 |
| 15 | GO:0004807: triose-phosphate isomerase activity | 1.77E-04 |
| 16 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.77E-04 |
| 17 | GO:0004655: porphobilinogen synthase activity | 1.77E-04 |
| 18 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.77E-04 |
| 19 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 4.01E-04 |
| 20 | GO:0052832: inositol monophosphate 3-phosphatase activity | 4.01E-04 |
| 21 | GO:0008934: inositol monophosphate 1-phosphatase activity | 4.01E-04 |
| 22 | GO:0052833: inositol monophosphate 4-phosphatase activity | 4.01E-04 |
| 23 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 6.55E-04 |
| 24 | GO:0070330: aromatase activity | 6.55E-04 |
| 25 | GO:0017150: tRNA dihydrouridine synthase activity | 6.55E-04 |
| 26 | GO:0004148: dihydrolipoyl dehydrogenase activity | 6.55E-04 |
| 27 | GO:0035250: UDP-galactosyltransferase activity | 9.34E-04 |
| 28 | GO:0016149: translation release factor activity, codon specific | 9.34E-04 |
| 29 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 9.34E-04 |
| 30 | GO:0008097: 5S rRNA binding | 9.34E-04 |
| 31 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 9.34E-04 |
| 32 | GO:0016851: magnesium chelatase activity | 9.34E-04 |
| 33 | GO:0001053: plastid sigma factor activity | 1.24E-03 |
| 34 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.24E-03 |
| 35 | GO:0016987: sigma factor activity | 1.24E-03 |
| 36 | GO:0018685: alkane 1-monooxygenase activity | 1.57E-03 |
| 37 | GO:0003989: acetyl-CoA carboxylase activity | 1.57E-03 |
| 38 | GO:0004040: amidase activity | 1.57E-03 |
| 39 | GO:0000156: phosphorelay response regulator activity | 1.88E-03 |
| 40 | GO:0016208: AMP binding | 1.94E-03 |
| 41 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.94E-03 |
| 42 | GO:0005200: structural constituent of cytoskeleton | 2.12E-03 |
| 43 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.12E-03 |
| 44 | GO:0051753: mannan synthase activity | 2.32E-03 |
| 45 | GO:0004124: cysteine synthase activity | 2.32E-03 |
| 46 | GO:0004126: cytidine deaminase activity | 2.32E-03 |
| 47 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.32E-03 |
| 48 | GO:0008312: 7S RNA binding | 3.17E-03 |
| 49 | GO:0003747: translation release factor activity | 4.10E-03 |
| 50 | GO:0004337: geranyltranstransferase activity | 4.10E-03 |
| 51 | GO:0004364: glutathione transferase activity | 4.84E-03 |
| 52 | GO:0004185: serine-type carboxypeptidase activity | 5.03E-03 |
| 53 | GO:0004805: trehalose-phosphatase activity | 5.11E-03 |
| 54 | GO:0004161: dimethylallyltranstransferase activity | 5.65E-03 |
| 55 | GO:0008794: arsenate reductase (glutaredoxin) activity | 5.65E-03 |
| 56 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.87E-03 |
| 57 | GO:0004022: alcohol dehydrogenase (NAD) activity | 6.78E-03 |
| 58 | GO:0031072: heat shock protein binding | 6.78E-03 |
| 59 | GO:0052689: carboxylic ester hydrolase activity | 7.37E-03 |
| 60 | GO:0051119: sugar transmembrane transporter activity | 7.98E-03 |
| 61 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.13E-02 |
| 62 | GO:0009055: electron carrier activity | 1.16E-02 |
| 63 | GO:0016758: transferase activity, transferring hexosyl groups | 1.18E-02 |
| 64 | GO:0003756: protein disulfide isomerase activity | 1.27E-02 |
| 65 | GO:0010181: FMN binding | 1.58E-02 |
| 66 | GO:0008289: lipid binding | 1.62E-02 |
| 67 | GO:0019901: protein kinase binding | 1.66E-02 |
| 68 | GO:0016597: amino acid binding | 2.18E-02 |
| 69 | GO:0102483: scopolin beta-glucosidase activity | 2.55E-02 |
| 70 | GO:0016788: hydrolase activity, acting on ester bonds | 2.65E-02 |
| 71 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.74E-02 |
| 72 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.94E-02 |
| 73 | GO:0004222: metalloendopeptidase activity | 2.94E-02 |
| 74 | GO:0050660: flavin adenine dinucleotide binding | 3.00E-02 |
| 75 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.04E-02 |
| 76 | GO:0003993: acid phosphatase activity | 3.35E-02 |
| 77 | GO:0005507: copper ion binding | 3.42E-02 |
| 78 | GO:0008422: beta-glucosidase activity | 3.45E-02 |
| 79 | GO:0000149: SNARE binding | 3.45E-02 |
| 80 | GO:0005516: calmodulin binding | 3.66E-02 |
| 81 | GO:0005484: SNAP receptor activity | 3.88E-02 |
| 82 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.11E-02 |
| 83 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000408: EKC/KEOPS complex | 0.00E+00 |
| 2 | GO:0009570: chloroplast stroma | 2.21E-19 |
| 3 | GO:0009941: chloroplast envelope | 7.16E-19 |
| 4 | GO:0009507: chloroplast | 1.15E-12 |
| 5 | GO:0005840: ribosome | 1.18E-07 |
| 6 | GO:0031225: anchored component of membrane | 2.46E-05 |
| 7 | GO:0046658: anchored component of plasma membrane | 1.04E-04 |
| 8 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.77E-04 |
| 9 | GO:0009295: nucleoid | 2.01E-04 |
| 10 | GO:0080085: signal recognition particle, chloroplast targeting | 4.01E-04 |
| 11 | GO:0009534: chloroplast thylakoid | 4.11E-04 |
| 12 | GO:0009505: plant-type cell wall | 4.90E-04 |
| 13 | GO:0000312: plastid small ribosomal subunit | 5.04E-04 |
| 14 | GO:0048046: apoplast | 5.51E-04 |
| 15 | GO:0010007: magnesium chelatase complex | 6.55E-04 |
| 16 | GO:0009509: chromoplast | 6.55E-04 |
| 17 | GO:0009317: acetyl-CoA carboxylase complex | 6.55E-04 |
| 18 | GO:0042646: plastid nucleoid | 9.34E-04 |
| 19 | GO:0009536: plastid | 1.72E-03 |
| 20 | GO:0016363: nuclear matrix | 2.32E-03 |
| 21 | GO:0030529: intracellular ribonucleoprotein complex | 2.38E-03 |
| 22 | GO:0005576: extracellular region | 2.78E-03 |
| 23 | GO:0012507: ER to Golgi transport vesicle membrane | 3.17E-03 |
| 24 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 3.63E-03 |
| 25 | GO:0005763: mitochondrial small ribosomal subunit | 4.10E-03 |
| 26 | GO:0045298: tubulin complex | 4.10E-03 |
| 27 | GO:0009535: chloroplast thylakoid membrane | 5.65E-03 |
| 28 | GO:0000311: plastid large ribosomal subunit | 6.20E-03 |
| 29 | GO:0009508: plastid chromosome | 6.78E-03 |
| 30 | GO:0005773: vacuole | 1.13E-02 |
| 31 | GO:0009543: chloroplast thylakoid lumen | 1.21E-02 |
| 32 | GO:0009504: cell plate | 1.66E-02 |
| 33 | GO:0005618: cell wall | 1.70E-02 |
| 34 | GO:0071944: cell periphery | 1.91E-02 |
| 35 | GO:0005778: peroxisomal membrane | 2.09E-02 |
| 36 | GO:0022627: cytosolic small ribosomal subunit | 2.22E-02 |
| 37 | GO:0000139: Golgi membrane | 2.45E-02 |
| 38 | GO:0009579: thylakoid | 2.75E-02 |
| 39 | GO:0015934: large ribosomal subunit | 3.04E-02 |
| 40 | GO:0009506: plasmodesma | 3.33E-02 |
| 41 | GO:0031902: late endosome membrane | 3.67E-02 |
| 42 | GO:0031201: SNARE complex | 3.67E-02 |
| 43 | GO:0005856: cytoskeleton | 4.22E-02 |
| 44 | GO:0005743: mitochondrial inner membrane | 4.40E-02 |