co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G21750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
3	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
4	GO:0045176: apical protein localization	0.00E+00
5	GO:0006154: adenosine catabolic process	0.00E+00
6	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
7	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.33E-06
8	GO:0009416: response to light stimulus	3.43E-05
9	GO:0010028: xanthophyll cycle	9.50E-05
10	GO:0034757: negative regulation of iron ion transport	9.50E-05
11	GO:0015936: coenzyme A metabolic process	9.50E-05
12	GO:0015969: guanosine tetraphosphate metabolic process	9.50E-05
13	GO:0010480: microsporocyte differentiation	9.50E-05
14	GO:0031338: regulation of vesicle fusion	9.50E-05
15	GO:0043087: regulation of GTPase activity	9.50E-05
16	GO:0006148: inosine catabolic process	9.50E-05
17	GO:0043609: regulation of carbon utilization	9.50E-05
18	GO:0005983: starch catabolic process	1.63E-04
19	GO:0010540: basipetal auxin transport	2.13E-04
20	GO:0016122: xanthophyll metabolic process	2.24E-04
21	GO:0010271: regulation of chlorophyll catabolic process	2.24E-04
22	GO:0010541: acropetal auxin transport	2.24E-04
23	GO:0090342: regulation of cell aging	2.24E-04
24	GO:0006000: fructose metabolic process	3.73E-04
25	GO:0080117: secondary growth	3.73E-04
26	GO:0010160: formation of animal organ boundary	3.73E-04
27	GO:0090630: activation of GTPase activity	3.73E-04
28	GO:0048443: stamen development	4.74E-04
29	GO:0080170: hydrogen peroxide transmembrane transport	5.37E-04
30	GO:0043481: anthocyanin accumulation in tissues in response to UV light	5.37E-04
31	GO:1901332: negative regulation of lateral root development	5.37E-04
32	GO:0019252: starch biosynthetic process	6.82E-04
33	GO:0045727: positive regulation of translation	7.14E-04
34	GO:0015994: chlorophyll metabolic process	7.14E-04
35	GO:0051205: protein insertion into membrane	7.14E-04
36	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	7.14E-04
37	GO:0010021: amylopectin biosynthetic process	7.14E-04
38	GO:0045038: protein import into chloroplast thylakoid membrane	9.02E-04
39	GO:0016126: sterol biosynthetic process	1.04E-03
40	GO:0010027: thylakoid membrane organization	1.04E-03
41	GO:0048827: phyllome development	1.10E-03
42	GO:0042549: photosystem II stabilization	1.10E-03
43	GO:0010256: endomembrane system organization	1.10E-03
44	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.10E-03
45	GO:0009913: epidermal cell differentiation	1.10E-03
46	GO:0060918: auxin transport	1.10E-03
47	GO:0048831: regulation of shoot system development	1.10E-03
48	GO:0015995: chlorophyll biosynthetic process	1.21E-03
49	GO:0010067: procambium histogenesis	1.31E-03
50	GO:0048509: regulation of meristem development	1.31E-03
51	GO:0048437: floral organ development	1.54E-03
52	GO:0008610: lipid biosynthetic process	1.78E-03
53	GO:0070413: trehalose metabolism in response to stress	1.78E-03
54	GO:0005975: carbohydrate metabolic process	1.96E-03
55	GO:0006002: fructose 6-phosphate metabolic process	2.03E-03
56	GO:0071482: cellular response to light stimulus	2.03E-03
57	GO:0032544: plastid translation	2.03E-03
58	GO:0009640: photomorphogenesis	2.16E-03
59	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.29E-03
60	GO:0048507: meristem development	2.29E-03
61	GO:0048589: developmental growth	2.29E-03
62	GO:0009638: phototropism	2.56E-03
63	GO:0006779: porphyrin-containing compound biosynthetic process	2.56E-03
64	GO:0006782: protoporphyrinogen IX biosynthetic process	2.85E-03
65	GO:0045036: protein targeting to chloroplast	2.85E-03
66	GO:0000038: very long-chain fatty acid metabolic process	3.14E-03
67	GO:0009773: photosynthetic electron transport in photosystem I	3.14E-03
68	GO:1903507: negative regulation of nucleic acid-templated transcription	3.14E-03
69	GO:0048229: gametophyte development	3.14E-03
70	GO:0008361: regulation of cell size	3.44E-03
71	GO:0010152: pollen maturation	3.44E-03
72	GO:0010075: regulation of meristem growth	3.76E-03
73	GO:0009725: response to hormone	3.76E-03
74	GO:0010102: lateral root morphogenesis	3.76E-03
75	GO:0009785: blue light signaling pathway	3.76E-03
76	GO:0010229: inflorescence development	3.76E-03
77	GO:0018107: peptidyl-threonine phosphorylation	3.76E-03
78	GO:0009718: anthocyanin-containing compound biosynthetic process	3.76E-03
79	GO:0009753: response to jasmonic acid	3.89E-03
80	GO:0009934: regulation of meristem structural organization	4.08E-03
81	GO:0010223: secondary shoot formation	4.08E-03
82	GO:0018105: peptidyl-serine phosphorylation	4.22E-03
83	GO:0006833: water transport	4.75E-03
84	GO:0019762: glucosinolate catabolic process	4.75E-03
85	GO:0006636: unsaturated fatty acid biosynthetic process	4.75E-03
86	GO:0009733: response to auxin	5.02E-03
87	GO:0006289: nucleotide-excision repair	5.10E-03
88	GO:0005992: trehalose biosynthetic process	5.10E-03
89	GO:0008299: isoprenoid biosynthetic process	5.46E-03
90	GO:0035428: hexose transmembrane transport	6.20E-03
91	GO:2000022: regulation of jasmonic acid mediated signaling pathway	6.20E-03
92	GO:0006633: fatty acid biosynthetic process	6.42E-03
93	GO:0071215: cellular response to abscisic acid stimulus	6.58E-03
94	GO:0009686: gibberellin biosynthetic process	6.58E-03
95	GO:0001944: vasculature development	6.58E-03
96	GO:0010089: xylem development	6.98E-03
97	GO:0070417: cellular response to cold	7.38E-03
98	GO:0009611: response to wounding	7.57E-03
99	GO:0048653: anther development	7.79E-03
100	GO:0042335: cuticle development	7.79E-03
101	GO:0034220: ion transmembrane transport	7.79E-03
102	GO:0010087: phloem or xylem histogenesis	7.79E-03
103	GO:0035556: intracellular signal transduction	7.89E-03
104	GO:0010268: brassinosteroid homeostasis	8.21E-03
105	GO:0009958: positive gravitropism	8.21E-03
106	GO:0010305: leaf vascular tissue pattern formation	8.21E-03
107	GO:0046323: glucose import	8.21E-03
108	GO:0007018: microtubule-based movement	8.63E-03
109	GO:0009791: post-embryonic development	9.06E-03
110	GO:0048825: cotyledon development	9.06E-03
111	GO:0016132: brassinosteroid biosynthetic process	9.51E-03
112	GO:0055085: transmembrane transport	9.98E-03
113	GO:0016125: sterol metabolic process	1.09E-02
114	GO:0009639: response to red or far red light	1.09E-02
115	GO:0071805: potassium ion transmembrane transport	1.14E-02
116	GO:0009911: positive regulation of flower development	1.23E-02
117	GO:0010029: regulation of seed germination	1.28E-02
118	GO:0007165: signal transduction	1.28E-02
119	GO:0009816: defense response to bacterium, incompatible interaction	1.28E-02
120	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.40E-02
121	GO:0046777: protein autophosphorylation	1.45E-02
122	GO:0009817: defense response to fungus, incompatible interaction	1.49E-02
123	GO:0000160: phosphorelay signal transduction system	1.54E-02
124	GO:0010311: lateral root formation	1.54E-02
125	GO:0006499: N-terminal protein myristoylation	1.59E-02
126	GO:0010218: response to far red light	1.59E-02
127	GO:0009910: negative regulation of flower development	1.65E-02
128	GO:0048527: lateral root development	1.65E-02
129	GO:0009631: cold acclimation	1.65E-02
130	GO:0009637: response to blue light	1.76E-02
131	GO:0030001: metal ion transport	1.93E-02
132	GO:0006631: fatty acid metabolic process	1.99E-02
133	GO:0009744: response to sucrose	2.10E-02
134	GO:0048364: root development	2.10E-02
135	GO:0009926: auxin polar transport	2.10E-02
136	GO:0008152: metabolic process	2.22E-02
137	GO:0016567: protein ubiquitination	2.25E-02
138	GO:0009636: response to toxic substance	2.29E-02
139	GO:0031347: regulation of defense response	2.41E-02
140	GO:0006364: rRNA processing	2.60E-02
141	GO:0006813: potassium ion transport	2.60E-02
142	GO:0009736: cytokinin-activated signaling pathway	2.60E-02
143	GO:0009909: regulation of flower development	2.80E-02
144	GO:0009734: auxin-activated signaling pathway	2.83E-02
145	GO:0006810: transport	2.92E-02
146	GO:0055114: oxidation-reduction process	3.04E-02
147	GO:0009908: flower development	3.22E-02
148	GO:0045893: positive regulation of transcription, DNA-templated	4.08E-02
149	GO:0042744: hydrogen peroxide catabolic process	4.30E-02
150	GO:0009790: embryo development	4.38E-02
151	GO:0009737: response to abscisic acid	4.62E-02
152	GO:0007623: circadian rhythm	4.93E-02
153	GO:0010150: leaf senescence	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0010303: limit dextrinase activity	0.00E+00
3	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
4	GO:0051060: pullulanase activity	0.00E+00
5	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
6	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
7	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
8	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.22E-06
9	GO:0004556: alpha-amylase activity	2.08E-05
10	GO:0047622: adenosine nucleosidase activity	9.50E-05
11	GO:0050139: nicotinate-N-glucosyltransferase activity	9.50E-05
12	GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity	9.50E-05
13	GO:0042282: hydroxymethylglutaryl-CoA reductase activity	9.50E-05
14	GO:0051777: ent-kaurenoate oxidase activity	9.50E-05
15	GO:0004856: xylulokinase activity	9.50E-05
16	GO:0030941: chloroplast targeting sequence binding	9.50E-05
17	GO:0005515: protein binding	1.95E-04
18	GO:0047724: inosine nucleosidase activity	2.24E-04
19	GO:0033201: alpha-1,4-glucan synthase activity	2.24E-04
20	GO:0004312: fatty acid synthase activity	2.24E-04
21	GO:0009884: cytokinin receptor activity	2.24E-04
22	GO:0008728: GTP diphosphokinase activity	2.24E-04
23	GO:0016868: intramolecular transferase activity, phosphotransferases	2.24E-04
24	GO:0015079: potassium ion transmembrane transporter activity	3.32E-04
25	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	3.73E-04
26	GO:0004180: carboxypeptidase activity	3.73E-04
27	GO:0004373: glycogen (starch) synthase activity	3.73E-04
28	GO:0004148: dihydrolipoyl dehydrogenase activity	3.73E-04
29	GO:0016805: dipeptidase activity	3.73E-04
30	GO:0005034: osmosensor activity	3.73E-04
31	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	5.37E-04
32	GO:0019201: nucleotide kinase activity	5.37E-04
33	GO:0010011: auxin binding	7.14E-04
34	GO:0051861: glycolipid binding	7.14E-04
35	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	7.14E-04
36	GO:0004506: squalene monooxygenase activity	7.14E-04
37	GO:0070628: proteasome binding	7.14E-04
38	GO:0009011: starch synthase activity	7.14E-04
39	GO:0048038: quinone binding	7.29E-04
40	GO:0004518: nuclease activity	7.76E-04
41	GO:0016773: phosphotransferase activity, alcohol group as acceptor	9.02E-04
42	GO:0017137: Rab GTPase binding	9.02E-04
43	GO:2001070: starch binding	1.10E-03
44	GO:0031593: polyubiquitin binding	1.10E-03
45	GO:0004017: adenylate kinase activity	1.31E-03
46	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.31E-03
47	GO:0019900: kinase binding	1.31E-03
48	GO:0005096: GTPase activator activity	1.40E-03
49	GO:0030234: enzyme regulator activity	2.85E-03
50	GO:0004673: protein histidine kinase activity	2.85E-03
51	GO:0004805: trehalose-phosphatase activity	2.85E-03
52	GO:0004871: signal transducer activity	2.90E-03
53	GO:0015386: potassium:proton antiporter activity	3.14E-03
54	GO:0000155: phosphorelay sensor kinase activity	3.76E-03
55	GO:0004565: beta-galactosidase activity	3.76E-03
56	GO:0010329: auxin efflux transmembrane transporter activity	3.76E-03
57	GO:0008081: phosphoric diester hydrolase activity	3.76E-03
58	GO:0005524: ATP binding	3.97E-03
59	GO:0008266: poly(U) RNA binding	4.08E-03
60	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.75E-03
61	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.75E-03
62	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.75E-03
63	GO:0043130: ubiquitin binding	5.10E-03
64	GO:0005528: FK506 binding	5.10E-03
65	GO:0003714: transcription corepressor activity	5.10E-03
66	GO:0043424: protein histidine kinase binding	5.46E-03
67	GO:0004707: MAP kinase activity	5.83E-03
68	GO:0033612: receptor serine/threonine kinase binding	5.83E-03
69	GO:0016301: kinase activity	7.79E-03
70	GO:0005355: glucose transmembrane transporter activity	8.63E-03
71	GO:0050662: coenzyme binding	8.63E-03
72	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	8.97E-03
73	GO:0004872: receptor activity	9.06E-03
74	GO:0003684: damaged DNA binding	1.09E-02
75	GO:0015250: water channel activity	1.23E-02
76	GO:0050660: flavin adenine dinucleotide binding	1.27E-02
77	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.33E-02
78	GO:0004721: phosphoprotein phosphatase activity	1.38E-02
79	GO:0004683: calmodulin-dependent protein kinase activity	1.38E-02
80	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.49E-02
81	GO:0004674: protein serine/threonine kinase activity	1.52E-02
82	GO:0005509: calcium ion binding	1.63E-02
83	GO:0050897: cobalt ion binding	1.65E-02
84	GO:0003746: translation elongation factor activity	1.76E-02
85	GO:0050661: NADP binding	1.93E-02
86	GO:0035091: phosphatidylinositol binding	2.23E-02
87	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.35E-02
88	GO:0003777: microtubule motor activity	2.80E-02
89	GO:0031625: ubiquitin protein ligase binding	2.80E-02
90	GO:0004672: protein kinase activity	2.92E-02
91	GO:0003729: mRNA binding	2.97E-02
92	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.14E-02
93	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.14E-02
94	GO:0004650: polygalacturonase activity	3.14E-02
95	GO:0003779: actin binding	3.27E-02
96	GO:0016746: transferase activity, transferring acyl groups	3.42E-02
97	GO:0019843: rRNA binding	3.92E-02
98	GO:0016829: lyase activity	4.15E-02
99	GO:0046872: metal ion binding	4.45E-02
100	GO:0015144: carbohydrate transmembrane transporter activity	4.46E-02
101	GO:0005351: sugar:proton symporter activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0009570: chloroplast stroma	1.55E-06
4	GO:0009507: chloroplast	3.12E-06
5	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.24E-05
6	GO:0009941: chloroplast envelope	8.78E-05
7	GO:0005886: plasma membrane	1.32E-04
8	GO:0009534: chloroplast thylakoid	3.78E-04
9	GO:0009535: chloroplast thylakoid membrane	1.01E-03
10	GO:0009505: plant-type cell wall	1.40E-03
11	GO:0031359: integral component of chloroplast outer membrane	1.54E-03
12	GO:0005773: vacuole	1.69E-03
13	GO:0009501: amyloplast	1.78E-03
14	GO:0005789: endoplasmic reticulum membrane	1.98E-03
15	GO:0031969: chloroplast membrane	2.18E-03
16	GO:0042644: chloroplast nucleoid	2.29E-03
17	GO:0009508: plastid chromosome	3.76E-03
18	GO:0009574: preprophase band	3.76E-03
19	GO:0030095: chloroplast photosystem II	4.08E-03
20	GO:0009543: chloroplast thylakoid lumen	5.12E-03
21	GO:0042651: thylakoid membrane	5.46E-03
22	GO:0005871: kinesin complex	7.38E-03
23	GO:0005770: late endosome	8.21E-03
24	GO:0048046: apoplast	9.00E-03
25	GO:0009295: nucleoid	1.14E-02
26	GO:0009707: chloroplast outer membrane	1.49E-02
27	GO:0031977: thylakoid lumen	1.99E-02
28	GO:0016021: integral component of membrane	2.70E-02
29	GO:0005783: endoplasmic reticulum	2.75E-02
30	GO:0005747: mitochondrial respiratory chain complex I	3.00E-02
31	GO:0009506: plasmodesma	3.17E-02
32	GO:0012505: endomembrane system	3.27E-02
33	GO:0010287: plastoglobule	3.78E-02
34	GO:0009579: thylakoid	4.25E-02
35	GO:0005759: mitochondrial matrix	4.61E-02
36	GO:0009705: plant-type vacuole membrane	4.93E-02