co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G21280

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
3	GO:0005996: monosaccharide metabolic process	0.00E+00
4	GO:0016553: base conversion or substitution editing	0.00E+00
5	GO:0015979: photosynthesis	2.80E-27
6	GO:0015995: chlorophyll biosynthetic process	2.34E-13
7	GO:0009773: photosynthetic electron transport in photosystem I	2.36E-09
8	GO:0009735: response to cytokinin	6.12E-09
9	GO:0010196: nonphotochemical quenching	1.50E-08
10	GO:0010027: thylakoid membrane organization	7.88E-07
11	GO:0009658: chloroplast organization	2.53E-06
12	GO:0090391: granum assembly	7.85E-06
13	GO:0009409: response to cold	1.11E-05
14	GO:0042742: defense response to bacterium	2.24E-05
15	GO:0006412: translation	2.72E-05
16	GO:0010207: photosystem II assembly	3.08E-05
17	GO:0042254: ribosome biogenesis	3.17E-05
18	GO:0010037: response to carbon dioxide	3.29E-05
19	GO:0015976: carbon utilization	3.29E-05
20	GO:0019464: glycine decarboxylation via glycine cleavage system	3.29E-05
21	GO:0009765: photosynthesis, light harvesting	3.29E-05
22	GO:2000122: negative regulation of stomatal complex development	3.29E-05
23	GO:0006546: glycine catabolic process	3.29E-05
24	GO:0018298: protein-chromophore linkage	3.77E-05
25	GO:0009768: photosynthesis, light harvesting in photosystem I	6.13E-05
26	GO:0009772: photosynthetic electron transport in photosystem II	1.42E-04
27	GO:1904964: positive regulation of phytol biosynthetic process	2.13E-04
28	GO:1902458: positive regulation of stomatal opening	2.13E-04
29	GO:0034337: RNA folding	2.13E-04
30	GO:0071588: hydrogen peroxide mediated signaling pathway	2.13E-04
31	GO:0043489: RNA stabilization	2.13E-04
32	GO:0015671: oxygen transport	2.13E-04
33	GO:1904966: positive regulation of vitamin E biosynthetic process	2.13E-04
34	GO:0032544: plastid translation	2.25E-04
35	GO:0010206: photosystem II repair	2.74E-04
36	GO:0055114: oxidation-reduction process	3.18E-04
37	GO:0080167: response to karrikin	3.62E-04
38	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.76E-04
39	GO:0006521: regulation of cellular amino acid metabolic process	4.76E-04
40	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.76E-04
41	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.76E-04
42	GO:0019253: reductive pentose-phosphate cycle	6.47E-04
43	GO:0006000: fructose metabolic process	7.74E-04
44	GO:0055070: copper ion homeostasis	1.10E-03
45	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.10E-03
46	GO:0051513: regulation of monopolar cell growth	1.10E-03
47	GO:0071484: cellular response to light intensity	1.10E-03
48	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.10E-03
49	GO:0045727: positive regulation of translation	1.47E-03
50	GO:0015994: chlorophyll metabolic process	1.47E-03
51	GO:0006021: inositol biosynthetic process	1.47E-03
52	GO:0000413: protein peptidyl-prolyl isomerization	1.61E-03
53	GO:0015986: ATP synthesis coupled proton transport	1.86E-03
54	GO:0045038: protein import into chloroplast thylakoid membrane	1.87E-03
55	GO:0031365: N-terminal protein amino acid modification	1.87E-03
56	GO:0034052: positive regulation of plant-type hypersensitive response	1.87E-03
57	GO:0032543: mitochondrial translation	1.87E-03
58	GO:0000302: response to reactive oxygen species	2.13E-03
59	GO:0042549: photosystem II stabilization	2.31E-03
60	GO:0046855: inositol phosphate dephosphorylation	2.31E-03
61	GO:0045454: cell redox homeostasis	2.43E-03
62	GO:0010189: vitamin E biosynthetic process	2.77E-03
63	GO:0009854: oxidative photosynthetic carbon pathway	2.77E-03
64	GO:0010019: chloroplast-nucleus signaling pathway	2.77E-03
65	GO:0010555: response to mannitol	2.77E-03
66	GO:1901259: chloroplast rRNA processing	2.77E-03
67	GO:0017148: negative regulation of translation	2.77E-03
68	GO:0009769: photosynthesis, light harvesting in photosystem II	3.26E-03
69	GO:0009645: response to low light intensity stimulus	3.26E-03
70	GO:0006400: tRNA modification	3.26E-03
71	GO:0009627: systemic acquired resistance	3.43E-03
72	GO:2000070: regulation of response to water deprivation	3.78E-03
73	GO:0009819: drought recovery	3.78E-03
74	GO:0009642: response to light intensity	3.78E-03
75	GO:0046620: regulation of organ growth	3.78E-03
76	GO:0043068: positive regulation of programmed cell death	3.78E-03
77	GO:0009817: defense response to fungus, incompatible interaction	4.00E-03
78	GO:0006002: fructose 6-phosphate metabolic process	4.33E-03
79	GO:0015996: chlorophyll catabolic process	4.33E-03
80	GO:0007186: G-protein coupled receptor signaling pathway	4.33E-03
81	GO:0010218: response to far red light	4.41E-03
82	GO:0009631: cold acclimation	4.62E-03
83	GO:0010119: regulation of stomatal movement	4.62E-03
84	GO:0006754: ATP biosynthetic process	4.90E-03
85	GO:0000373: Group II intron splicing	4.90E-03
86	GO:0009245: lipid A biosynthetic process	4.90E-03
87	GO:0019432: triglyceride biosynthetic process	4.90E-03
88	GO:0006783: heme biosynthetic process	4.90E-03
89	GO:0009637: response to blue light	5.07E-03
90	GO:0009853: photorespiration	5.07E-03
91	GO:0034599: cellular response to oxidative stress	5.30E-03
92	GO:0006949: syncytium formation	6.12E-03
93	GO:0006782: protoporphyrinogen IX biosynthetic process	6.12E-03
94	GO:0010114: response to red light	6.53E-03
95	GO:0009750: response to fructose	6.77E-03
96	GO:0018119: peptidyl-cysteine S-nitrosylation	6.77E-03
97	GO:0010015: root morphogenesis	6.77E-03
98	GO:0000272: polysaccharide catabolic process	6.77E-03
99	GO:0006790: sulfur compound metabolic process	7.44E-03
100	GO:0045037: protein import into chloroplast stroma	7.44E-03
101	GO:0006006: glucose metabolic process	8.13E-03
102	GO:0006094: gluconeogenesis	8.13E-03
103	GO:0005986: sucrose biosynthetic process	8.13E-03
104	GO:0010020: chloroplast fission	8.84E-03
105	GO:0046854: phosphatidylinositol phosphorylation	9.58E-03
106	GO:0046688: response to copper ion	9.58E-03
107	GO:0019853: L-ascorbic acid biosynthetic process	9.58E-03
108	GO:0006636: unsaturated fatty acid biosynthetic process	1.03E-02
109	GO:0019344: cysteine biosynthetic process	1.11E-02
110	GO:0009740: gibberellic acid mediated signaling pathway	1.18E-02
111	GO:0048511: rhythmic process	1.27E-02
112	GO:0061077: chaperone-mediated protein folding	1.27E-02
113	GO:0009269: response to desiccation	1.27E-02
114	GO:0009814: defense response, incompatible interaction	1.36E-02
115	GO:0006012: galactose metabolic process	1.45E-02
116	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.45E-02
117	GO:0009411: response to UV	1.45E-02
118	GO:0042631: cellular response to water deprivation	1.72E-02
119	GO:0042335: cuticle development	1.72E-02
120	GO:0042744: hydrogen peroxide catabolic process	1.80E-02
121	GO:0010182: sugar mediated signaling pathway	1.81E-02
122	GO:0042752: regulation of circadian rhythm	1.91E-02
123	GO:0006633: fatty acid biosynthetic process	1.98E-02
124	GO:0019252: starch biosynthetic process	2.00E-02
125	GO:0009749: response to glucose	2.00E-02
126	GO:0045490: pectin catabolic process	2.18E-02
127	GO:0009828: plant-type cell wall loosening	2.41E-02
128	GO:0009739: response to gibberellin	2.44E-02
129	GO:0009416: response to light stimulus	3.05E-02
130	GO:0045087: innate immune response	3.91E-02
131	GO:0016051: carbohydrate biosynthetic process	3.91E-02
132	GO:0006810: transport	4.04E-02
133	GO:0030001: metal ion transport	4.29E-02
134	GO:0006631: fatty acid metabolic process	4.41E-02
135	GO:0009926: auxin polar transport	4.68E-02
136	GO:0009744: response to sucrose	4.68E-02
137	GO:0009644: response to high light intensity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
3	GO:0051738: xanthophyll binding	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0008887: glycerate kinase activity	0.00E+00
8	GO:0045550: geranylgeranyl reductase activity	0.00E+00
9	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
10	GO:0019843: rRNA binding	7.55E-09
11	GO:0016168: chlorophyll binding	2.38E-08
12	GO:0003735: structural constituent of ribosome	1.75E-07
13	GO:0051920: peroxiredoxin activity	1.36E-06
14	GO:0016209: antioxidant activity	3.37E-06
15	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.79E-05
16	GO:0031409: pigment binding	4.44E-05
17	GO:0003959: NADPH dehydrogenase activity	5.28E-05
18	GO:0004130: cytochrome-c peroxidase activity	7.77E-05
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.26E-04
20	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.13E-04
21	GO:0005344: oxygen transporter activity	2.13E-04
22	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.13E-04
23	GO:0004853: uroporphyrinogen decarboxylase activity	2.13E-04
24	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.13E-04
25	GO:0047746: chlorophyllase activity	4.76E-04
26	GO:0042389: omega-3 fatty acid desaturase activity	4.76E-04
27	GO:0010297: heteropolysaccharide binding	4.76E-04
28	GO:0004047: aminomethyltransferase activity	4.76E-04
29	GO:0052832: inositol monophosphate 3-phosphatase activity	4.76E-04
30	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.76E-04
31	GO:0008934: inositol monophosphate 1-phosphatase activity	4.76E-04
32	GO:0052833: inositol monophosphate 4-phosphatase activity	4.76E-04
33	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.76E-04
34	GO:0016630: protochlorophyllide reductase activity	4.76E-04
35	GO:0008967: phosphoglycolate phosphatase activity	4.76E-04
36	GO:0004089: carbonate dehydratase activity	5.75E-04
37	GO:0008266: poly(U) RNA binding	6.47E-04
38	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.74E-04
39	GO:0004324: ferredoxin-NADP+ reductase activity	7.74E-04
40	GO:0010277: chlorophyllide a oxygenase [overall] activity	7.74E-04
41	GO:0005528: FK506 binding	8.90E-04
42	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.10E-03
43	GO:0016851: magnesium chelatase activity	1.10E-03
44	GO:0022891: substrate-specific transmembrane transporter activity	1.27E-03
45	GO:0004601: peroxidase activity	1.33E-03
46	GO:0004659: prenyltransferase activity	1.47E-03
47	GO:1990137: plant seed peroxidase activity	1.47E-03
48	GO:0043495: protein anchor	1.47E-03
49	GO:0005509: calcium ion binding	1.65E-03
50	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.73E-03
51	GO:0042578: phosphoric ester hydrolase activity	2.31E-03
52	GO:0031177: phosphopantetheine binding	2.31E-03
53	GO:0016688: L-ascorbate peroxidase activity	2.31E-03
54	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.77E-03
55	GO:0000035: acyl binding	2.77E-03
56	GO:0004602: glutathione peroxidase activity	2.77E-03
57	GO:0008235: metalloexopeptidase activity	3.26E-03
58	GO:0019899: enzyme binding	3.26E-03
59	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.78E-03
60	GO:0004034: aldose 1-epimerase activity	3.78E-03
61	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.33E-03
62	GO:0030234: enzyme regulator activity	6.12E-03
63	GO:0004177: aminopeptidase activity	6.77E-03
64	GO:0051537: 2 iron, 2 sulfur cluster binding	7.06E-03
65	GO:0031072: heat shock protein binding	8.13E-03
66	GO:0004650: polygalacturonase activity	1.15E-02
67	GO:0046872: metal ion binding	1.25E-02
68	GO:0030570: pectate lyase activity	1.45E-02
69	GO:0003756: protein disulfide isomerase activity	1.53E-02
70	GO:0016853: isomerase activity	1.91E-02
71	GO:0050662: coenzyme binding	1.91E-02
72	GO:0008289: lipid binding	2.25E-02
73	GO:0008483: transaminase activity	2.52E-02
74	GO:0016597: amino acid binding	2.62E-02
75	GO:0042802: identical protein binding	2.77E-02
76	GO:0016788: hydrolase activity, acting on ester bonds	3.43E-02
77	GO:0016491: oxidoreductase activity	3.45E-02
78	GO:0003993: acid phosphatase activity	4.03E-02
79	GO:0050661: NADP binding	4.29E-02
80	GO:0051539: 4 iron, 4 sulfur cluster binding	4.29E-02
81	GO:0003723: RNA binding	4.29E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0044391: ribosomal subunit	0.00E+00
4	GO:0009515: granal stacked thylakoid	0.00E+00
5	GO:0009507: chloroplast	1.03E-62
6	GO:0009535: chloroplast thylakoid membrane	1.84E-59
7	GO:0009534: chloroplast thylakoid	3.15E-48
8	GO:0009579: thylakoid	8.25E-45
9	GO:0009941: chloroplast envelope	7.97E-40
10	GO:0009570: chloroplast stroma	4.95E-28
11	GO:0009543: chloroplast thylakoid lumen	1.86E-23
12	GO:0031977: thylakoid lumen	1.42E-17
13	GO:0010287: plastoglobule	2.14E-10
14	GO:0005840: ribosome	3.59E-10
15	GO:0010319: stromule	1.34E-08
16	GO:0009654: photosystem II oxygen evolving complex	2.80E-08
17	GO:0019898: extrinsic component of membrane	2.33E-07
18	GO:0030095: chloroplast photosystem II	6.20E-07
19	GO:0048046: apoplast	7.64E-07
20	GO:0009706: chloroplast inner membrane	1.79E-06
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.89E-06
22	GO:0009522: photosystem I	7.56E-06
23	GO:0009523: photosystem II	8.80E-06
24	GO:0005960: glycine cleavage complex	1.79E-05
25	GO:0009517: PSII associated light-harvesting complex II	3.29E-05
26	GO:0042651: thylakoid membrane	6.13E-05
27	GO:0015935: small ribosomal subunit	7.11E-05
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	7.77E-05
29	GO:0016020: membrane	1.52E-04
30	GO:0009538: photosystem I reaction center	1.82E-04
31	GO:0009783: photosystem II antenna complex	2.13E-04
32	GO:0031969: chloroplast membrane	3.62E-04
33	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.76E-04
34	GO:0030093: chloroplast photosystem I	4.76E-04
35	GO:0042170: plastid membrane	4.76E-04
36	GO:0000311: plastid large ribosomal subunit	5.07E-04
37	GO:0030076: light-harvesting complex	7.24E-04
38	GO:0009528: plastid inner membrane	7.74E-04
39	GO:0010007: magnesium chelatase complex	7.74E-04
40	GO:0009532: plastid stroma	1.07E-03
41	GO:0009544: chloroplast ATP synthase complex	1.47E-03
42	GO:0009527: plastid outer membrane	1.47E-03
43	GO:0055035: plastid thylakoid membrane	1.87E-03
44	GO:0030529: intracellular ribonucleoprotein complex	3.07E-03
45	GO:0009533: chloroplast stromal thylakoid	3.26E-03
46	GO:0005811: lipid particle	4.33E-03
47	GO:0015934: large ribosomal subunit	4.62E-03
48	GO:0032040: small-subunit processome	7.44E-03
49	GO:0009508: plastid chromosome	8.13E-03
50	GO:0009295: nucleoid	2.52E-02
51	GO:0009505: plant-type cell wall	3.21E-02
52	GO:0009707: chloroplast outer membrane	3.30E-02