co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G19640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901799: negative regulation of proteasomal protein catabolic process	0.00E+00
2	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
3	GO:0032780: negative regulation of ATPase activity	0.00E+00
4	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
5	GO:0010360: negative regulation of anion channel activity	0.00E+00
6	GO:0000303: response to superoxide	4.88E-05
7	GO:0080173: male-female gamete recognition during double fertilization	4.88E-05
8	GO:0006481: C-terminal protein methylation	4.88E-05
9	GO:1902361: mitochondrial pyruvate transmembrane transport	4.88E-05
10	GO:0034214: protein hexamerization	4.88E-05
11	GO:0012501: programmed cell death	6.18E-05
12	GO:0019441: tryptophan catabolic process to kynurenine	1.20E-04
13	GO:0031648: protein destabilization	1.20E-04
14	GO:0019521: D-gluconate metabolic process	1.20E-04
15	GO:0006212: uracil catabolic process	1.20E-04
16	GO:0019483: beta-alanine biosynthetic process	1.20E-04
17	GO:0006850: mitochondrial pyruvate transport	1.20E-04
18	GO:0015865: purine nucleotide transport	1.20E-04
19	GO:1902000: homogentisate catabolic process	1.20E-04
20	GO:0009072: aromatic amino acid family metabolic process	2.06E-04
21	GO:0034051: negative regulation of plant-type hypersensitive response	2.06E-04
22	GO:0010359: regulation of anion channel activity	2.06E-04
23	GO:0070676: intralumenal vesicle formation	3.01E-04
24	GO:0006624: vacuolar protein processing	3.01E-04
25	GO:0046902: regulation of mitochondrial membrane permeability	3.01E-04
26	GO:0006809: nitric oxide biosynthetic process	3.01E-04
27	GO:0071786: endoplasmic reticulum tubular network organization	3.01E-04
28	GO:0006464: cellular protein modification process	3.77E-04
29	GO:0006470: protein dephosphorylation	3.80E-04
30	GO:0006878: cellular copper ion homeostasis	4.04E-04
31	GO:0010188: response to microbial phytotoxin	4.04E-04
32	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	6.29E-04
33	GO:0070814: hydrogen sulfide biosynthetic process	6.29E-04
34	GO:0010358: leaf shaping	6.29E-04
35	GO:1902456: regulation of stomatal opening	6.29E-04
36	GO:0002238: response to molecule of fungal origin	6.29E-04
37	GO:0006499: N-terminal protein myristoylation	6.38E-04
38	GO:0010119: regulation of stomatal movement	6.67E-04
39	GO:0009723: response to ethylene	6.68E-04
40	GO:0010044: response to aluminum ion	8.75E-04
41	GO:0010161: red light signaling pathway	8.75E-04
42	GO:0006955: immune response	8.75E-04
43	GO:0046470: phosphatidylcholine metabolic process	8.75E-04
44	GO:2000070: regulation of response to water deprivation	1.01E-03
45	GO:0043068: positive regulation of programmed cell death	1.01E-03
46	GO:0006605: protein targeting	1.01E-03
47	GO:0006979: response to oxidative stress	1.11E-03
48	GO:0043562: cellular response to nitrogen levels	1.14E-03
49	GO:0051603: proteolysis involved in cellular protein catabolic process	1.27E-03
50	GO:0006098: pentose-phosphate shunt	1.28E-03
51	GO:0051865: protein autoubiquitination	1.28E-03
52	GO:0043069: negative regulation of programmed cell death	1.59E-03
53	GO:0019538: protein metabolic process	1.59E-03
54	GO:0000103: sulfate assimilation	1.59E-03
55	GO:0071365: cellular response to auxin stimulus	1.91E-03
56	GO:0010102: lateral root morphogenesis	2.08E-03
57	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	2.08E-03
58	GO:0007034: vacuolar transport	2.26E-03
59	GO:0009738: abscisic acid-activated signaling pathway	2.31E-03
60	GO:0009845: seed germination	2.33E-03
61	GO:2000377: regulation of reactive oxygen species metabolic process	2.81E-03
62	GO:0031348: negative regulation of defense response	3.41E-03
63	GO:0030433: ubiquitin-dependent ERAD pathway	3.41E-03
64	GO:0006511: ubiquitin-dependent protein catabolic process	3.55E-03
65	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.04E-03
66	GO:0042391: regulation of membrane potential	4.26E-03
67	GO:0006662: glycerol ether metabolic process	4.48E-03
68	GO:0010193: response to ozone	5.18E-03
69	GO:0007264: small GTPase mediated signal transduction	5.42E-03
70	GO:0016032: viral process	5.42E-03
71	GO:0006914: autophagy	5.91E-03
72	GO:0046777: protein autophosphorylation	6.02E-03
73	GO:0051607: defense response to virus	6.42E-03
74	GO:0016579: protein deubiquitination	6.42E-03
75	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	6.94E-03
76	GO:0009816: defense response to bacterium, incompatible interaction	6.94E-03
77	GO:0006950: response to stress	7.48E-03
78	GO:0032259: methylation	7.96E-03
79	GO:0015031: protein transport	7.98E-03
80	GO:0009407: toxin catabolic process	8.60E-03
81	GO:0007568: aging	8.88E-03
82	GO:0009867: jasmonic acid mediated signaling pathway	9.47E-03
83	GO:0034599: cellular response to oxidative stress	9.77E-03
84	GO:0046686: response to cadmium ion	1.03E-02
85	GO:0006839: mitochondrial transport	1.04E-02
86	GO:0009873: ethylene-activated signaling pathway	1.07E-02
87	GO:0006631: fatty acid metabolic process	1.07E-02
88	GO:0000209: protein polyubiquitination	1.16E-02
89	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.30E-02
90	GO:0009846: pollen germination	1.33E-02
91	GO:0006417: regulation of translation	1.50E-02
92	GO:0048367: shoot system development	1.61E-02
93	GO:0018105: peptidyl-serine phosphorylation	1.83E-02
94	GO:0000398: mRNA splicing, via spliceosome	1.99E-02
95	GO:0009790: embryo development	2.35E-02
96	GO:0006468: protein phosphorylation	2.41E-02
97	GO:0006413: translational initiation	2.52E-02
98	GO:0010150: leaf senescence	2.65E-02
99	GO:0009651: response to salt stress	2.72E-02
100	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.87E-02
101	GO:0010468: regulation of gene expression	3.00E-02
102	GO:0009617: response to bacterium	3.00E-02
103	GO:0006970: response to osmotic stress	3.81E-02
104	GO:0009860: pollen tube growth	3.81E-02
105	GO:0007049: cell cycle	3.91E-02
106	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.31E-02
107	GO:0010200: response to chitin	4.31E-02
108	GO:0016192: vesicle-mediated transport	4.36E-02
109	GO:0045454: cell redox homeostasis	4.78E-02
110	GO:0045892: negative regulation of transcription, DNA-templated	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0042030: ATPase inhibitor activity	0.00E+00
2	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
3	GO:0004157: dihydropyrimidinase activity	0.00E+00
4	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	4.88E-05
5	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	4.88E-05
6	GO:0019786: Atg8-specific protease activity	4.88E-05
7	GO:0019779: Atg8 activating enzyme activity	1.20E-04
8	GO:0004061: arylformamidase activity	1.20E-04
9	GO:0004781: sulfate adenylyltransferase (ATP) activity	2.06E-04
10	GO:0050833: pyruvate transmembrane transporter activity	2.06E-04
11	GO:0004197: cysteine-type endopeptidase activity	3.32E-04
12	GO:0019776: Atg8 ligase activity	4.04E-04
13	GO:0016004: phospholipase activator activity	4.04E-04
14	GO:0031386: protein tag	5.13E-04
15	GO:0005471: ATP:ADP antiporter activity	5.13E-04
16	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	5.13E-04
17	GO:0031593: polyubiquitin binding	6.29E-04
18	GO:0036402: proteasome-activating ATPase activity	6.29E-04
19	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	7.50E-04
20	GO:0003950: NAD+ ADP-ribosyltransferase activity	7.50E-04
21	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	7.50E-04
22	GO:0004620: phospholipase activity	8.75E-04
23	GO:0004364: glutathione transferase activity	8.93E-04
24	GO:0004722: protein serine/threonine phosphatase activity	1.02E-03
25	GO:0004630: phospholipase D activity	1.14E-03
26	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	1.14E-03
27	GO:0016887: ATPase activity	2.03E-03
28	GO:0031624: ubiquitin conjugating enzyme binding	2.26E-03
29	GO:0004175: endopeptidase activity	2.26E-03
30	GO:0030552: cAMP binding	2.44E-03
31	GO:0030553: cGMP binding	2.44E-03
32	GO:0017025: TBP-class protein binding	2.44E-03
33	GO:0005216: ion channel activity	3.01E-03
34	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	3.20E-03
35	GO:0047134: protein-disulfide reductase activity	4.04E-03
36	GO:0005249: voltage-gated potassium channel activity	4.26E-03
37	GO:0030551: cyclic nucleotide binding	4.26E-03
38	GO:0008168: methyltransferase activity	4.38E-03
39	GO:0004791: thioredoxin-disulfide reductase activity	4.71E-03
40	GO:0004843: thiol-dependent ubiquitin-specific protease activity	5.18E-03
41	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.66E-03
42	GO:0061630: ubiquitin protein ligase activity	5.93E-03
43	GO:0005515: protein binding	6.22E-03
44	GO:0009931: calcium-dependent protein serine/threonine kinase activity	7.20E-03
45	GO:0004683: calmodulin-dependent protein kinase activity	7.48E-03
46	GO:0005096: GTPase activator activity	8.31E-03
47	GO:0005198: structural molecule activity	1.23E-02
48	GO:0008234: cysteine-type peptidase activity	1.50E-02
49	GO:0015035: protein disulfide oxidoreductase activity	1.83E-02
50	GO:0005516: calmodulin binding	2.23E-02
51	GO:0005509: calcium ion binding	2.77E-02
52	GO:0003743: translation initiation factor activity	2.96E-02
53	GO:0042802: identical protein binding	3.14E-02
54	GO:0004601: peroxidase activity	3.61E-02
55	GO:0046872: metal ion binding	3.92E-02
56	GO:0004674: protein serine/threonine kinase activity	4.37E-02
57	GO:0042803: protein homodimerization activity	4.94E-02
58	GO:0004871: signal transducer activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0000164: protein phosphatase type 1 complex	4.47E-06
3	GO:0005783: endoplasmic reticulum	8.96E-05
4	GO:0005775: vacuolar lumen	3.01E-04
5	GO:0000323: lytic vacuole	3.01E-04
6	GO:0071782: endoplasmic reticulum tubular network	3.01E-04
7	GO:0005776: autophagosome	4.04E-04
8	GO:0005771: multivesicular body	6.29E-04
9	GO:0031597: cytosolic proteasome complex	7.50E-04
10	GO:0000815: ESCRT III complex	7.50E-04
11	GO:0016363: nuclear matrix	7.50E-04
12	GO:0005886: plasma membrane	8.63E-04
13	GO:0031595: nuclear proteasome complex	8.75E-04
14	GO:0005773: vacuole	9.40E-04
15	GO:0005829: cytosol	9.62E-04
16	GO:0031305: integral component of mitochondrial inner membrane	1.01E-03
17	GO:0000421: autophagosome membrane	1.01E-03
18	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.01E-03
19	GO:0000502: proteasome complex	1.23E-03
20	GO:0008540: proteasome regulatory particle, base subcomplex	1.43E-03
21	GO:0005764: lysosome	2.26E-03
22	GO:0005777: peroxisome	2.87E-03
23	GO:0031410: cytoplasmic vesicle	3.41E-03
24	GO:0030136: clathrin-coated vesicle	4.04E-03
25	GO:0005770: late endosome	4.48E-03
26	GO:0000151: ubiquitin ligase complex	8.03E-03
27	GO:0005789: endoplasmic reticulum membrane	1.01E-02
28	GO:0005819: spindle	1.01E-02
29	GO:0005794: Golgi apparatus	1.02E-02
30	GO:0005737: cytoplasm	1.08E-02
31	GO:0031966: mitochondrial membrane	1.33E-02
32	GO:0005635: nuclear envelope	1.47E-02
33	GO:0010008: endosome membrane	1.61E-02
34	GO:0012505: endomembrane system	1.76E-02
35	GO:0009506: plasmodesma	1.79E-02
36	GO:0005623: cell	2.14E-02
37	GO:0009524: phragmoplast	2.18E-02
38	GO:0005615: extracellular space	2.87E-02
39	GO:0046658: anchored component of plasma membrane	3.23E-02
40	GO:0005874: microtubule	4.11E-02