co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G18740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0006642: triglyceride mobilization	0.00E+00
3	GO:0005996: monosaccharide metabolic process	0.00E+00
4	GO:0015979: photosynthesis	1.94E-11
5	GO:0009773: photosynthetic electron transport in photosystem I	1.14E-07
6	GO:0019464: glycine decarboxylation via glycine cleavage system	2.20E-05
7	GO:0032544: plastid translation	1.59E-04
8	GO:1904966: positive regulation of vitamin E biosynthetic process	1.69E-04
9	GO:1904964: positive regulation of phytol biosynthetic process	1.69E-04
10	GO:0071461: cellular response to redox state	1.69E-04
11	GO:0071588: hydrogen peroxide mediated signaling pathway	1.69E-04
12	GO:0006824: cobalt ion transport	1.69E-04
13	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	1.69E-04
14	GO:0015995: chlorophyll biosynthetic process	2.68E-04
15	GO:0018298: protein-chromophore linkage	3.07E-04
16	GO:0031648: protein destabilization	3.83E-04
17	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.83E-04
18	GO:0006695: cholesterol biosynthetic process	3.83E-04
19	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.83E-04
20	GO:0034755: iron ion transmembrane transport	3.83E-04
21	GO:0080005: photosystem stoichiometry adjustment	3.83E-04
22	GO:0010115: regulation of abscisic acid biosynthetic process	3.83E-04
23	GO:0007623: circadian rhythm	4.17E-04
24	GO:0006094: gluconeogenesis	4.18E-04
25	GO:0009853: photorespiration	4.19E-04
26	GO:0019253: reductive pentose-phosphate cycle	4.71E-04
27	GO:0032504: multicellular organism reproduction	6.25E-04
28	GO:0006000: fructose metabolic process	6.25E-04
29	GO:0090391: granum assembly	6.25E-04
30	GO:0019563: glycerol catabolic process	6.25E-04
31	GO:0009658: chloroplast organization	8.13E-04
32	GO:2001141: regulation of RNA biosynthetic process	8.93E-04
33	GO:0009152: purine ribonucleotide biosynthetic process	8.93E-04
34	GO:0046653: tetrahydrofolate metabolic process	8.93E-04
35	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	8.93E-04
36	GO:0010731: protein glutathionylation	8.93E-04
37	GO:0080022: primary root development	1.17E-03
38	GO:0010037: response to carbon dioxide	1.18E-03
39	GO:0015976: carbon utilization	1.18E-03
40	GO:0009765: photosynthesis, light harvesting	1.18E-03
41	GO:0006183: GTP biosynthetic process	1.18E-03
42	GO:0045727: positive regulation of translation	1.18E-03
43	GO:0015994: chlorophyll metabolic process	1.18E-03
44	GO:2000122: negative regulation of stomatal complex development	1.18E-03
45	GO:0006546: glycine catabolic process	1.18E-03
46	GO:0031365: N-terminal protein amino acid modification	1.50E-03
47	GO:0009247: glycolipid biosynthetic process	1.50E-03
48	GO:0006561: proline biosynthetic process	1.85E-03
49	GO:0010405: arabinogalactan protein metabolic process	1.85E-03
50	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.85E-03
51	GO:0010027: thylakoid membrane organization	2.22E-03
52	GO:0009854: oxidative photosynthetic carbon pathway	2.22E-03
53	GO:0010019: chloroplast-nucleus signaling pathway	2.22E-03
54	GO:0042128: nitrate assimilation	2.48E-03
55	GO:0045490: pectin catabolic process	2.60E-03
56	GO:0009610: response to symbiotic fungus	2.61E-03
57	GO:0010196: nonphotochemical quenching	2.61E-03
58	GO:0050829: defense response to Gram-negative bacterium	2.61E-03
59	GO:0009850: auxin metabolic process	3.02E-03
60	GO:0019375: galactolipid biosynthetic process	3.02E-03
61	GO:0009819: drought recovery	3.02E-03
62	GO:0006002: fructose 6-phosphate metabolic process	3.46E-03
63	GO:0071482: cellular response to light stimulus	3.46E-03
64	GO:0033384: geranyl diphosphate biosynthetic process	3.91E-03
65	GO:0000373: Group II intron splicing	3.91E-03
66	GO:0009051: pentose-phosphate shunt, oxidative branch	3.91E-03
67	GO:0045337: farnesyl diphosphate biosynthetic process	3.91E-03
68	GO:0051865: protein autoubiquitination	3.91E-03
69	GO:0010206: photosystem II repair	3.91E-03
70	GO:0042254: ribosome biogenesis	4.62E-03
71	GO:0009688: abscisic acid biosynthetic process	4.87E-03
72	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.87E-03
73	GO:0006352: DNA-templated transcription, initiation	5.38E-03
74	GO:0000272: polysaccharide catabolic process	5.38E-03
75	GO:0009750: response to fructose	5.38E-03
76	GO:0018119: peptidyl-cysteine S-nitrosylation	5.38E-03
77	GO:0010628: positive regulation of gene expression	6.46E-03
78	GO:0006006: glucose metabolic process	6.46E-03
79	GO:0005986: sucrose biosynthetic process	6.46E-03
80	GO:0010143: cutin biosynthetic process	7.02E-03
81	GO:0010207: photosystem II assembly	7.02E-03
82	GO:0045454: cell redox homeostasis	7.45E-03
83	GO:0006810: transport	7.47E-03
84	GO:0010167: response to nitrate	7.60E-03
85	GO:0005975: carbohydrate metabolic process	7.91E-03
86	GO:0006636: unsaturated fatty acid biosynthetic process	8.20E-03
87	GO:0005992: trehalose biosynthetic process	8.81E-03
88	GO:0000027: ribosomal large subunit assembly	8.81E-03
89	GO:0009768: photosynthesis, light harvesting in photosystem I	9.44E-03
90	GO:0048511: rhythmic process	1.01E-02
91	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.08E-02
92	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.14E-02
93	GO:0006284: base-excision repair	1.21E-02
94	GO:0019722: calcium-mediated signaling	1.21E-02
95	GO:0000413: protein peptidyl-prolyl isomerization	1.36E-02
96	GO:0042631: cellular response to water deprivation	1.36E-02
97	GO:0042335: cuticle development	1.36E-02
98	GO:0010182: sugar mediated signaling pathway	1.43E-02
99	GO:0010305: leaf vascular tissue pattern formation	1.43E-02
100	GO:0042752: regulation of circadian rhythm	1.51E-02
101	GO:0019252: starch biosynthetic process	1.58E-02
102	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.66E-02
103	GO:0000302: response to reactive oxygen species	1.66E-02
104	GO:0009735: response to cytokinin	1.80E-02
105	GO:1901657: glycosyl compound metabolic process	1.82E-02
106	GO:0009828: plant-type cell wall loosening	1.90E-02
107	GO:0007267: cell-cell signaling	1.99E-02
108	GO:0000160: phosphorelay signal transduction system	2.70E-02
109	GO:0010218: response to far red light	2.79E-02
110	GO:0006811: ion transport	2.79E-02
111	GO:0009407: toxin catabolic process	2.79E-02
112	GO:0009631: cold acclimation	2.89E-02
113	GO:0010119: regulation of stomatal movement	2.89E-02
114	GO:0016051: carbohydrate biosynthetic process	3.08E-02
115	GO:0009637: response to blue light	3.08E-02
116	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.10E-02
117	GO:0034599: cellular response to oxidative stress	3.18E-02
118	GO:0030001: metal ion transport	3.38E-02
119	GO:0010114: response to red light	3.69E-02
120	GO:0009644: response to high light intensity	3.91E-02
121	GO:0009636: response to toxic substance	4.01E-02
122	GO:0016042: lipid catabolic process	4.29E-02
123	GO:0009664: plant-type cell wall organization	4.34E-02
124	GO:0055114: oxidation-reduction process	4.47E-02
125	GO:0009736: cytokinin-activated signaling pathway	4.57E-02
126	GO:0006364: rRNA processing	4.57E-02
127	GO:0006857: oligopeptide transport	4.79E-02
128	GO:0006417: regulation of translation	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
2	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
3	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
4	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
5	GO:0008887: glycerate kinase activity	0.00E+00
6	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
7	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
8	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.19E-05
9	GO:0016851: magnesium chelatase activity	1.19E-05
10	GO:0019843: rRNA binding	2.29E-05
11	GO:0004328: formamidase activity	1.69E-04
12	GO:0004807: triose-phosphate isomerase activity	1.69E-04
13	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	1.69E-04
14	GO:0016168: chlorophyll binding	2.31E-04
15	GO:0047746: chlorophyllase activity	3.83E-04
16	GO:0042389: omega-3 fatty acid desaturase activity	3.83E-04
17	GO:0010297: heteropolysaccharide binding	3.83E-04
18	GO:0003938: IMP dehydrogenase activity	3.83E-04
19	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	3.83E-04
20	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.83E-04
21	GO:0045174: glutathione dehydrogenase (ascorbate) activity	6.25E-04
22	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	6.25E-04
23	GO:0008864: formyltetrahydrofolate deformylase activity	6.25E-04
24	GO:0010277: chlorophyllide a oxygenase [overall] activity	6.25E-04
25	GO:0050734: hydroxycinnamoyltransferase activity	6.25E-04
26	GO:0004148: dihydrolipoyl dehydrogenase activity	6.25E-04
27	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	8.93E-04
28	GO:0035250: UDP-galactosyltransferase activity	8.93E-04
29	GO:0022891: substrate-specific transmembrane transporter activity	9.28E-04
30	GO:0030570: pectate lyase activity	9.28E-04
31	GO:0001053: plastid sigma factor activity	1.18E-03
32	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.18E-03
33	GO:0016987: sigma factor activity	1.18E-03
34	GO:1990137: plant seed peroxidase activity	1.18E-03
35	GO:0043495: protein anchor	1.18E-03
36	GO:0008725: DNA-3-methyladenine glycosylase activity	1.50E-03
37	GO:0016688: L-ascorbate peroxidase activity	1.85E-03
38	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.85E-03
39	GO:0004130: cytochrome-c peroxidase activity	1.85E-03
40	GO:0042578: phosphoric ester hydrolase activity	1.85E-03
41	GO:0051920: peroxiredoxin activity	2.22E-03
42	GO:0051753: mannan synthase activity	2.22E-03
43	GO:0008235: metalloexopeptidase activity	2.61E-03
44	GO:0019899: enzyme binding	2.61E-03
45	GO:0016209: antioxidant activity	3.02E-03
46	GO:0005509: calcium ion binding	3.31E-03
47	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.46E-03
48	GO:0004337: geranyltranstransferase activity	3.91E-03
49	GO:0005381: iron ion transmembrane transporter activity	4.38E-03
50	GO:0004364: glutathione transferase activity	4.51E-03
51	GO:0016788: hydrolase activity, acting on ester bonds	4.62E-03
52	GO:0004805: trehalose-phosphatase activity	4.87E-03
53	GO:0051537: 2 iron, 2 sulfur cluster binding	5.08E-03
54	GO:0004177: aminopeptidase activity	5.38E-03
55	GO:0004161: dimethylallyltranstransferase activity	5.38E-03
56	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.47E-03
57	GO:0004022: alcohol dehydrogenase (NAD) activity	6.46E-03
58	GO:0004089: carbonate dehydratase activity	6.46E-03
59	GO:0031409: pigment binding	8.20E-03
60	GO:0046872: metal ion binding	8.63E-03
61	GO:0005528: FK506 binding	8.81E-03
62	GO:0016758: transferase activity, transferring hexosyl groups	1.10E-02
63	GO:0016829: lyase activity	1.22E-02
64	GO:0003735: structural constituent of ribosome	1.26E-02
65	GO:0050662: coenzyme binding	1.51E-02
66	GO:0048038: quinone binding	1.66E-02
67	GO:0008194: UDP-glycosyltransferase activity	1.75E-02
68	GO:0000156: phosphorelay response regulator activity	1.82E-02
69	GO:0102483: scopolin beta-glucosidase activity	2.42E-02
70	GO:0008236: serine-type peptidase activity	2.51E-02
71	GO:0043531: ADP binding	2.65E-02
72	GO:0008422: beta-glucosidase activity	3.28E-02
73	GO:0052689: carboxylic ester hydrolase activity	3.31E-02
74	GO:0050661: NADP binding	3.38E-02
75	GO:0051539: 4 iron, 4 sulfur cluster binding	3.38E-02
76	GO:0043621: protein self-association	3.91E-02
77	GO:0015293: symporter activity	4.01E-02
78	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.57E-02
79	GO:0003690: double-stranded DNA binding	4.68E-02
80	GO:0009055: electron carrier activity	4.73E-02
81	GO:0045330: aspartyl esterase activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	7.78E-26
2	GO:0009535: chloroplast thylakoid membrane	8.28E-22
3	GO:0009941: chloroplast envelope	8.76E-15
4	GO:0009543: chloroplast thylakoid lumen	3.98E-14
5	GO:0009579: thylakoid	4.34E-14
6	GO:0009534: chloroplast thylakoid	9.36E-13
7	GO:0009570: chloroplast stroma	1.76E-10
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.47E-08
9	GO:0031977: thylakoid lumen	6.36E-08
10	GO:0009706: chloroplast inner membrane	6.53E-07
11	GO:0009654: photosystem II oxygen evolving complex	8.17E-07
12	GO:0019898: extrinsic component of membrane	4.37E-06
13	GO:0010007: magnesium chelatase complex	5.12E-06
14	GO:0005960: glycine cleavage complex	1.19E-05
15	GO:0009515: granal stacked thylakoid	1.69E-04
16	GO:0042170: plastid membrane	3.83E-04
17	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.83E-04
18	GO:0030095: chloroplast photosystem II	4.71E-04
19	GO:0042651: thylakoid membrane	7.14E-04
20	GO:0005840: ribosome	1.10E-03
21	GO:0009522: photosystem I	1.35E-03
22	GO:0009523: photosystem II	1.44E-03
23	GO:0010287: plastoglobule	1.61E-03
24	GO:0009533: chloroplast stromal thylakoid	2.61E-03
25	GO:0005811: lipid particle	3.46E-03
26	GO:0046930: pore complex	3.46E-03
27	GO:0030076: light-harvesting complex	7.60E-03
28	GO:0048046: apoplast	1.26E-02
29	GO:0071944: cell periphery	1.82E-02
30	GO:0009505: plant-type cell wall	1.97E-02
31	GO:0010319: stromule	1.99E-02
32	GO:0009295: nucleoid	1.99E-02
33	GO:0046658: anchored component of plasma membrane	2.07E-02
34	GO:0030529: intracellular ribonucleoprotein complex	2.16E-02
35	GO:0015934: large ribosomal subunit	2.89E-02
36	GO:0031225: anchored component of membrane	3.51E-02