Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G17740

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042820: vitamin B6 catabolic process0.00E+00
2GO:0018023: peptidyl-lysine trimethylation0.00E+00
3GO:1905499: trichome papilla formation0.00E+00
4GO:0002184: cytoplasmic translational termination0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
7GO:0006642: triglyceride mobilization0.00E+00
8GO:0042821: pyridoxal biosynthetic process0.00E+00
9GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
10GO:0032544: plastid translation2.20E-07
11GO:0009658: chloroplast organization2.30E-06
12GO:0010027: thylakoid membrane organization4.72E-06
13GO:0018026: peptidyl-lysine monomethylation5.29E-06
14GO:0015995: chlorophyll biosynthetic process7.23E-06
15GO:0090391: granum assembly1.87E-05
16GO:0016123: xanthophyll biosynthetic process1.15E-04
17GO:0006655: phosphatidylglycerol biosynthetic process1.66E-04
18GO:0006412: translation1.70E-04
19GO:0042254: ribosome biogenesis1.74E-04
20GO:0016998: cell wall macromolecule catabolic process1.92E-04
21GO:0042372: phylloquinone biosynthetic process2.25E-04
22GO:0016117: carotenoid biosynthetic process3.09E-04
23GO:0006633: fatty acid biosynthetic process3.25E-04
24GO:1904966: positive regulation of vitamin E biosynthetic process3.42E-04
25GO:0046166: glyceraldehyde-3-phosphate biosynthetic process3.42E-04
26GO:1904964: positive regulation of phytol biosynthetic process3.42E-04
27GO:0042371: vitamin K biosynthetic process3.42E-04
28GO:0071461: cellular response to redox state3.42E-04
29GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.42E-04
30GO:0009443: pyridoxal 5'-phosphate salvage3.42E-04
31GO:0000413: protein peptidyl-prolyl isomerization3.43E-04
32GO:0042335: cuticle development3.43E-04
33GO:0015979: photosynthesis3.58E-04
34GO:0006353: DNA-templated transcription, termination3.67E-04
35GO:0045717: negative regulation of fatty acid biosynthetic process7.45E-04
36GO:0010275: NAD(P)H dehydrogenase complex assembly7.45E-04
37GO:0046741: transport of virus in host, tissue to tissue7.45E-04
38GO:1902326: positive regulation of chlorophyll biosynthetic process7.45E-04
39GO:0080005: photosystem stoichiometry adjustment7.45E-04
40GO:0006415: translational termination8.59E-04
41GO:0009773: photosynthetic electron transport in photosystem I8.59E-04
42GO:0010411: xyloglucan metabolic process9.77E-04
43GO:0016024: CDP-diacylglycerol biosynthetic process9.79E-04
44GO:0032504: multicellular organism reproduction1.21E-03
45GO:0090506: axillary shoot meristem initiation1.21E-03
46GO:0010581: regulation of starch biosynthetic process1.21E-03
47GO:0019563: glycerol catabolic process1.21E-03
48GO:0010020: chloroplast fission1.25E-03
49GO:0010207: photosystem II assembly1.25E-03
50GO:0009735: response to cytokinin1.58E-03
51GO:0016556: mRNA modification1.74E-03
52GO:0043572: plastid fission1.74E-03
53GO:2001141: regulation of RNA biosynthetic process1.74E-03
54GO:0010371: regulation of gibberellin biosynthetic process1.74E-03
55GO:0009102: biotin biosynthetic process1.74E-03
56GO:0009152: purine ribonucleotide biosynthetic process1.74E-03
57GO:0046653: tetrahydrofolate metabolic process1.74E-03
58GO:0010239: chloroplast mRNA processing1.74E-03
59GO:0009052: pentose-phosphate shunt, non-oxidative branch1.74E-03
60GO:0010731: protein glutathionylation1.74E-03
61GO:0006424: glutamyl-tRNA aminoacylation1.74E-03
62GO:0046739: transport of virus in multicellular host1.74E-03
63GO:0042546: cell wall biogenesis2.17E-03
64GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.33E-03
65GO:0010037: response to carbon dioxide2.33E-03
66GO:0006808: regulation of nitrogen utilization2.33E-03
67GO:0015976: carbon utilization2.33E-03
68GO:0009765: photosynthesis, light harvesting2.33E-03
69GO:2000122: negative regulation of stomatal complex development2.33E-03
70GO:0032543: mitochondrial translation2.98E-03
71GO:0045487: gibberellin catabolic process2.98E-03
72GO:0010236: plastoquinone biosynthetic process2.98E-03
73GO:0006665: sphingolipid metabolic process2.98E-03
74GO:0000304: response to singlet oxygen2.98E-03
75GO:0016120: carotene biosynthetic process2.98E-03
76GO:0006457: protein folding3.16E-03
77GO:0006014: D-ribose metabolic process3.68E-03
78GO:0010405: arabinogalactan protein metabolic process3.68E-03
79GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.68E-03
80GO:0042793: transcription from plastid promoter3.68E-03
81GO:0010190: cytochrome b6f complex assembly3.68E-03
82GO:0018258: protein O-linked glycosylation via hydroxyproline3.68E-03
83GO:0019252: starch biosynthetic process3.94E-03
84GO:1901259: chloroplast rRNA processing4.43E-03
85GO:0010019: chloroplast-nucleus signaling pathway4.43E-03
86GO:0010555: response to mannitol4.43E-03
87GO:0010067: procambium histogenesis4.43E-03
88GO:0042026: protein refolding4.43E-03
89GO:0006458: 'de novo' protein folding4.43E-03
90GO:0006400: tRNA modification5.23E-03
91GO:0006955: immune response5.23E-03
92GO:0009395: phospholipid catabolic process5.23E-03
93GO:0009772: photosynthetic electron transport in photosystem II5.23E-03
94GO:0010196: nonphotochemical quenching5.23E-03
95GO:0048564: photosystem I assembly6.08E-03
96GO:0009642: response to light intensity6.08E-03
97GO:0042255: ribosome assembly6.08E-03
98GO:0009627: systemic acquired resistance6.81E-03
99GO:0017004: cytochrome complex assembly6.98E-03
100GO:0071482: cellular response to light stimulus6.98E-03
101GO:0010497: plasmodesmata-mediated intercellular transport6.98E-03
102GO:0009657: plastid organization6.98E-03
103GO:0006783: heme biosynthetic process7.91E-03
104GO:0006754: ATP biosynthetic process7.91E-03
105GO:0010206: photosystem II repair7.91E-03
106GO:0009817: defense response to fungus, incompatible interaction7.97E-03
107GO:0006779: porphyrin-containing compound biosynthetic process8.89E-03
108GO:0042761: very long-chain fatty acid biosynthetic process8.89E-03
109GO:0009451: RNA modification9.78E-03
110GO:0006782: protoporphyrinogen IX biosynthetic process9.92E-03
111GO:0006352: DNA-templated transcription, initiation1.10E-02
112GO:0018119: peptidyl-cysteine S-nitrosylation1.10E-02
113GO:0019684: photosynthesis, light reaction1.10E-02
114GO:0009073: aromatic amino acid family biosynthetic process1.10E-02
115GO:0010628: positive regulation of gene expression1.32E-02
116GO:0006094: gluconeogenesis1.32E-02
117GO:0009767: photosynthetic electron transport chain1.32E-02
118GO:0019253: reductive pentose-phosphate cycle1.44E-02
119GO:0010223: secondary shoot formation1.44E-02
120GO:0071732: cellular response to nitric oxide1.56E-02
121GO:0010167: response to nitrate1.56E-02
122GO:0010025: wax biosynthetic process1.69E-02
123GO:0019344: cysteine biosynthetic process1.82E-02
124GO:0000027: ribosomal large subunit assembly1.82E-02
125GO:0061077: chaperone-mediated protein folding2.08E-02
126GO:0031408: oxylipin biosynthetic process2.08E-02
127GO:0006096: glycolytic process2.09E-02
128GO:0016226: iron-sulfur cluster assembly2.22E-02
129GO:0071555: cell wall organization2.26E-02
130GO:0071369: cellular response to ethylene stimulus2.37E-02
131GO:0001944: vasculature development2.37E-02
132GO:0009306: protein secretion2.51E-02
133GO:0010089: xylem development2.51E-02
134GO:0010091: trichome branching2.51E-02
135GO:0019722: calcium-mediated signaling2.51E-02
136GO:0080022: primary root development2.81E-02
137GO:0008033: tRNA processing2.81E-02
138GO:0010087: phloem or xylem histogenesis2.81E-02
139GO:0006869: lipid transport3.06E-02
140GO:0006814: sodium ion transport3.12E-02
141GO:0015031: protein transport3.38E-02
142GO:0071554: cell wall organization or biogenesis3.44E-02
143GO:0002229: defense response to oomycetes3.44E-02
144GO:0032502: developmental process3.61E-02
145GO:0007264: small GTPase mediated signal transduction3.61E-02
146GO:0009790: embryo development3.68E-02
147GO:0009793: embryo development ending in seed dormancy3.74E-02
148GO:0071281: cellular response to iron ion3.78E-02
149GO:0016125: sterol metabolic process3.95E-02
150GO:0007267: cell-cell signaling4.12E-02
151GO:0051607: defense response to virus4.30E-02
152GO:0009615: response to virus4.47E-02
153GO:0016126: sterol biosynthetic process4.47E-02
154GO:0042128: nitrate assimilation4.84E-02
155GO:0009739: response to gibberellin4.84E-02
RankGO TermAdjusted P value
1GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
2GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
3GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
4GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
5GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
6GO:0004076: biotin synthase activity0.00E+00
7GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
8GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
9GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
10GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
11GO:0004496: mevalonate kinase activity0.00E+00
12GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
13GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
14GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
15GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
16GO:0045435: lycopene epsilon cyclase activity0.00E+00
17GO:0019843: rRNA binding2.78E-10
18GO:0016851: magnesium chelatase activity2.08E-07
19GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity5.29E-06
20GO:0003735: structural constituent of ribosome3.78E-05
21GO:0016149: translation release factor activity, codon specific4.12E-05
22GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.47E-05
23GO:0016279: protein-lysine N-methyltransferase activity7.33E-05
24GO:0051920: peroxiredoxin activity2.25E-04
25GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.42E-04
26GO:0004328: formamidase activity3.42E-04
27GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.42E-04
28GO:0004560: alpha-L-fucosidase activity3.42E-04
29GO:0004807: triose-phosphate isomerase activity3.42E-04
30GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.42E-04
31GO:0042834: peptidoglycan binding3.42E-04
32GO:0009374: biotin binding3.42E-04
33GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity3.42E-04
34GO:0016209: antioxidant activity3.67E-04
35GO:0016762: xyloglucan:xyloglucosyl transferase activity4.99E-04
36GO:0003747: translation release factor activity5.41E-04
37GO:0008883: glutamyl-tRNA reductase activity7.45E-04
38GO:0016788: hydrolase activity, acting on ester bonds8.76E-04
39GO:0016798: hydrolase activity, acting on glycosyl bonds9.77E-04
40GO:0004751: ribose-5-phosphate isomerase activity1.21E-03
41GO:0045174: glutathione dehydrogenase (ascorbate) activity1.21E-03
42GO:0030267: glyoxylate reductase (NADP) activity1.21E-03
43GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.21E-03
44GO:0070402: NADPH binding1.21E-03
45GO:0008864: formyltetrahydrofolate deformylase activity1.21E-03
46GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.21E-03
47GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.21E-03
48GO:0017150: tRNA dihydrouridine synthase activity1.21E-03
49GO:0004148: dihydrolipoyl dehydrogenase activity1.21E-03
50GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.74E-03
51GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.74E-03
52GO:0043023: ribosomal large subunit binding1.74E-03
53GO:0008097: 5S rRNA binding1.74E-03
54GO:0008508: bile acid:sodium symporter activity1.74E-03
55GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.74E-03
56GO:0051539: 4 iron, 4 sulfur cluster binding1.76E-03
57GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.33E-03
58GO:0004659: prenyltransferase activity2.33E-03
59GO:0001053: plastid sigma factor activity2.33E-03
60GO:0016836: hydro-lyase activity2.33E-03
61GO:0004045: aminoacyl-tRNA hydrolase activity2.33E-03
62GO:0016987: sigma factor activity2.33E-03
63GO:0052793: pectin acetylesterase activity2.33E-03
64GO:0043495: protein anchor2.33E-03
65GO:0003989: acetyl-CoA carboxylase activity2.98E-03
66GO:0009922: fatty acid elongase activity2.98E-03
67GO:2001070: starch binding3.68E-03
68GO:0080030: methyl indole-3-acetate esterase activity3.68E-03
69GO:1990714: hydroxyproline O-galactosyltransferase activity3.68E-03
70GO:0016208: AMP binding3.68E-03
71GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.68E-03
72GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.43E-03
73GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.43E-03
74GO:0004747: ribokinase activity4.43E-03
75GO:0019899: enzyme binding5.23E-03
76GO:0008237: metallopeptidase activity5.43E-03
77GO:0008865: fructokinase activity6.08E-03
78GO:0004033: aldo-keto reductase (NADP) activity6.08E-03
79GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen6.52E-03
80GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.91E-03
81GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.91E-03
82GO:0004222: metalloendopeptidase activity8.79E-03
83GO:0047617: acyl-CoA hydrolase activity8.89E-03
84GO:0003993: acid phosphatase activity1.06E-02
85GO:0044183: protein binding involved in protein folding1.10E-02
86GO:0008378: galactosyltransferase activity1.21E-02
87GO:0004089: carbonate dehydratase activity1.32E-02
88GO:0031072: heat shock protein binding1.32E-02
89GO:0009982: pseudouridine synthase activity1.32E-02
90GO:0043621: protein self-association1.41E-02
91GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.44E-02
92GO:0051536: iron-sulfur cluster binding1.82E-02
93GO:0005528: FK506 binding1.82E-02
94GO:0003690: double-stranded DNA binding1.83E-02
95GO:0043424: protein histidine kinase binding1.95E-02
96GO:0008324: cation transmembrane transporter activity1.95E-02
97GO:0003723: RNA binding2.01E-02
98GO:0004176: ATP-dependent peptidase activity2.08E-02
99GO:0033612: receptor serine/threonine kinase binding2.08E-02
100GO:0022891: substrate-specific transmembrane transporter activity2.37E-02
101GO:0052689: carboxylic ester hydrolase activity2.47E-02
102GO:0003727: single-stranded RNA binding2.51E-02
103GO:0051082: unfolded protein binding2.52E-02
104GO:0005102: receptor binding2.66E-02
105GO:0003713: transcription coactivator activity2.96E-02
106GO:0008080: N-acetyltransferase activity2.96E-02
107GO:0016758: transferase activity, transferring hexosyl groups3.07E-02
108GO:0019901: protein kinase binding3.28E-02
109GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.41E-02
110GO:0004519: endonuclease activity3.92E-02
111GO:0016597: amino acid binding4.30E-02
112GO:0016413: O-acetyltransferase activity4.30E-02
113GO:0016168: chlorophyll binding4.65E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009507: chloroplast4.16E-56
3GO:0009570: chloroplast stroma5.77E-36
4GO:0009941: chloroplast envelope3.25E-27
5GO:0009535: chloroplast thylakoid membrane2.23E-14
6GO:0009579: thylakoid3.89E-13
7GO:0009543: chloroplast thylakoid lumen1.13E-11
8GO:0009534: chloroplast thylakoid7.34E-11
9GO:0010007: magnesium chelatase complex4.31E-08
10GO:0031977: thylakoid lumen6.39E-08
11GO:0031969: chloroplast membrane5.09E-06
12GO:0009536: plastid2.31E-05
13GO:0005840: ribosome6.15E-05
14GO:0042651: thylakoid membrane1.68E-04
15GO:0009533: chloroplast stromal thylakoid2.93E-04
16GO:0009515: granal stacked thylakoid3.42E-04
17GO:0009923: fatty acid elongase complex3.42E-04
18GO:0009344: nitrite reductase complex [NAD(P)H]3.42E-04
19GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.42E-04
20GO:0048046: apoplast3.77E-04
21GO:0046658: anchored component of plasma membrane6.44E-04
22GO:0000427: plastid-encoded plastid RNA polymerase complex7.45E-04
23GO:0009569: chloroplast starch grain7.45E-04
24GO:0009706: chloroplast inner membrane8.56E-04
25GO:0009508: plastid chromosome1.11E-03
26GO:0009317: acetyl-CoA carboxylase complex1.21E-03
27GO:0005853: eukaryotic translation elongation factor 1 complex1.21E-03
28GO:0030095: chloroplast photosystem II1.25E-03
29GO:0031225: anchored component of membrane1.38E-03
30GO:0043234: protein complex1.55E-03
31GO:0009654: photosystem II oxygen evolving complex1.90E-03
32GO:0019898: extrinsic component of membrane3.94E-03
33GO:0009295: nucleoid5.43E-03
34GO:0022626: cytosolic ribosome6.20E-03
35GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.91E-03
36GO:0005618: cell wall8.21E-03
37GO:0015934: large ribosomal subunit9.22E-03
38GO:0009505: plant-type cell wall1.18E-02
39GO:0000311: plastid large ribosomal subunit1.21E-02
40GO:0015935: small ribosomal subunit2.08E-02
41GO:0009532: plastid stroma2.08E-02
42GO:0010287: plastoglobule2.99E-02
43GO:0009523: photosystem II3.28E-02
44GO:0043231: intracellular membrane-bounded organelle3.99E-02
45GO:0005778: peroxisomal membrane4.12E-02
46GO:0016020: membrane4.38E-02
47GO:0030529: intracellular ribonucleoprotein complex4.47E-02
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Gene type



Gene DE type