co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G16442

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
3	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
4	GO:0090279: regulation of calcium ion import	0.00E+00
5	GO:0046322: negative regulation of fatty acid oxidation	0.00E+00
6	GO:0042493: response to drug	0.00E+00
7	GO:0071474: cellular hyperosmotic response	0.00E+00
8	GO:0033591: response to L-ascorbic acid	9.82E-06
9	GO:0010411: xyloglucan metabolic process	4.33E-05
10	GO:0006833: water transport	5.82E-05
11	GO:0006633: fatty acid biosynthetic process	1.18E-04
12	GO:0042546: cell wall biogenesis	1.41E-04
13	GO:0034220: ion transmembrane transport	1.71E-04
14	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.41E-04
15	GO:0060627: regulation of vesicle-mediated transport	2.41E-04
16	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.41E-04
17	GO:0000032: cell wall mannoprotein biosynthetic process	2.41E-04
18	GO:0032025: response to cobalt ion	2.41E-04
19	GO:0043266: regulation of potassium ion transport	2.41E-04
20	GO:2000021: regulation of ion homeostasis	2.41E-04
21	GO:0051262: protein tetramerization	5.34E-04
22	GO:0010198: synergid death	5.34E-04
23	GO:0043255: regulation of carbohydrate biosynthetic process	5.34E-04
24	GO:0010541: acropetal auxin transport	5.34E-04
25	GO:0005975: carbohydrate metabolic process	6.04E-04
26	GO:0009414: response to water deprivation	7.52E-04
27	GO:0071555: cell wall organization	7.93E-04
28	GO:2001295: malonyl-CoA biosynthetic process	8.68E-04
29	GO:0000280: nuclear division	8.68E-04
30	GO:0010160: formation of animal organ boundary	8.68E-04
31	GO:1901562: response to paraquat	8.68E-04
32	GO:0051017: actin filament bundle assembly	1.05E-03
33	GO:0007017: microtubule-based process	1.16E-03
34	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.24E-03
35	GO:0009298: GDP-mannose biosynthetic process	1.24E-03
36	GO:0007231: osmosensory signaling pathway	1.24E-03
37	GO:0051639: actin filament network formation	1.24E-03
38	GO:0034059: response to anoxia	1.24E-03
39	GO:0080170: hydrogen peroxide transmembrane transport	1.24E-03
40	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.24E-03
41	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.24E-03
42	GO:0009650: UV protection	1.24E-03
43	GO:0010306: rhamnogalacturonan II biosynthetic process	1.24E-03
44	GO:1901332: negative regulation of lateral root development	1.24E-03
45	GO:0050482: arachidonic acid secretion	1.24E-03
46	GO:0016998: cell wall macromolecule catabolic process	1.27E-03
47	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.51E-03
48	GO:0051764: actin crosslink formation	1.65E-03
49	GO:0006085: acetyl-CoA biosynthetic process	1.65E-03
50	GO:0006183: GTP biosynthetic process	1.65E-03
51	GO:0033500: carbohydrate homeostasis	1.65E-03
52	GO:0031122: cytoplasmic microtubule organization	1.65E-03
53	GO:0010021: amylopectin biosynthetic process	1.65E-03
54	GO:0009956: radial pattern formation	1.65E-03
55	GO:0009755: hormone-mediated signaling pathway	1.65E-03
56	GO:0009107: lipoate biosynthetic process	2.11E-03
57	GO:0010438: cellular response to sulfur starvation	2.11E-03
58	GO:0019252: starch biosynthetic process	2.37E-03
59	GO:0006751: glutathione catabolic process	2.60E-03
60	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.60E-03
61	GO:0060918: auxin transport	2.60E-03
62	GO:0006796: phosphate-containing compound metabolic process	2.60E-03
63	GO:0010337: regulation of salicylic acid metabolic process	2.60E-03
64	GO:0006014: D-ribose metabolic process	2.60E-03
65	GO:0009828: plant-type cell wall loosening	3.07E-03
66	GO:0009612: response to mechanical stimulus	3.12E-03
67	GO:0031930: mitochondria-nucleus signaling pathway	3.12E-03
68	GO:0009082: branched-chain amino acid biosynthetic process	3.12E-03
69	GO:0009942: longitudinal axis specification	3.12E-03
70	GO:0009099: valine biosynthetic process	3.12E-03
71	GO:0010196: nonphotochemical quenching	3.68E-03
72	GO:0009645: response to low light intensity stimulus	3.68E-03
73	GO:0055085: transmembrane transport	4.13E-03
74	GO:0016042: lipid catabolic process	4.19E-03
75	GO:0006644: phospholipid metabolic process	4.27E-03
76	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.27E-03
77	GO:0009819: drought recovery	4.27E-03
78	GO:0010439: regulation of glucosinolate biosynthetic process	4.27E-03
79	GO:2000070: regulation of response to water deprivation	4.27E-03
80	GO:0006629: lipid metabolic process	4.38E-03
81	GO:0071482: cellular response to light stimulus	4.89E-03
82	GO:0009097: isoleucine biosynthetic process	4.89E-03
83	GO:0007389: pattern specification process	4.89E-03
84	GO:0009739: response to gibberellin	5.70E-03
85	GO:0007166: cell surface receptor signaling pathway	5.86E-03
86	GO:0016051: carbohydrate biosynthetic process	6.04E-03
87	GO:0009638: phototropism	6.21E-03
88	GO:0009098: leucine biosynthetic process	6.21E-03
89	GO:0042761: very long-chain fatty acid biosynthetic process	6.21E-03
90	GO:0006949: syncytium formation	6.92E-03
91	GO:0019538: protein metabolic process	6.92E-03
92	GO:0006032: chitin catabolic process	6.92E-03
93	GO:0043069: negative regulation of programmed cell death	6.92E-03
94	GO:0009684: indoleacetic acid biosynthetic process	7.65E-03
95	GO:0046856: phosphatidylinositol dephosphorylation	7.65E-03
96	GO:0010015: root morphogenesis	7.65E-03
97	GO:0006816: calcium ion transport	7.65E-03
98	GO:0009682: induced systemic resistance	7.65E-03
99	GO:0019684: photosynthesis, light reaction	7.65E-03
100	GO:1903507: negative regulation of nucleic acid-templated transcription	7.65E-03
101	GO:0009926: auxin polar transport	7.79E-03
102	GO:0009826: unidimensional cell growth	8.21E-03
103	GO:0008361: regulation of cell size	8.41E-03
104	GO:0016024: CDP-diacylglycerol biosynthetic process	8.41E-03
105	GO:0010105: negative regulation of ethylene-activated signaling pathway	8.41E-03
106	GO:0009644: response to high light intensity	8.43E-03
107	GO:0042538: hyperosmotic salinity response	9.79E-03
108	GO:0009664: plant-type cell wall organization	9.79E-03
109	GO:0010540: basipetal auxin transport	1.00E-02
110	GO:0010143: cutin biosynthetic process	1.00E-02
111	GO:0009933: meristem structural organization	1.00E-02
112	GO:0010207: photosystem II assembly	1.00E-02
113	GO:0006486: protein glycosylation	1.05E-02
114	GO:0010053: root epidermal cell differentiation	1.09E-02
115	GO:0009825: multidimensional cell growth	1.09E-02
116	GO:0010167: response to nitrate	1.09E-02
117	GO:0070588: calcium ion transmembrane transport	1.09E-02
118	GO:0007165: signal transduction	1.16E-02
119	GO:0010025: wax biosynthetic process	1.17E-02
120	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.18E-02
121	GO:0015979: photosynthesis	1.34E-02
122	GO:0048511: rhythmic process	1.45E-02
123	GO:0010431: seed maturation	1.45E-02
124	GO:0030245: cellulose catabolic process	1.54E-02
125	GO:0035428: hexose transmembrane transport	1.54E-02
126	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.54E-02
127	GO:0031348: negative regulation of defense response	1.54E-02
128	GO:0009742: brassinosteroid mediated signaling pathway	1.59E-02
129	GO:0006012: galactose metabolic process	1.64E-02
130	GO:0009411: response to UV	1.64E-02
131	GO:0009625: response to insect	1.64E-02
132	GO:0048443: stamen development	1.74E-02
133	GO:0006284: base-excision repair	1.74E-02
134	GO:0019722: calcium-mediated signaling	1.74E-02
135	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.84E-02
136	GO:0009408: response to heat	1.86E-02
137	GO:0000413: protein peptidyl-prolyl isomerization	1.95E-02
138	GO:0046323: glucose import	2.05E-02
139	GO:0009958: positive gravitropism	2.05E-02
140	GO:0010305: leaf vascular tissue pattern formation	2.05E-02
141	GO:0048868: pollen tube development	2.05E-02
142	GO:0008152: metabolic process	2.10E-02
143	GO:0042752: regulation of circadian rhythm	2.16E-02
144	GO:0071554: cell wall organization or biogenesis	2.38E-02
145	GO:0010583: response to cyclopentenone	2.50E-02
146	GO:1901657: glycosyl compound metabolic process	2.62E-02
147	GO:0010252: auxin homeostasis	2.73E-02
148	GO:0009639: response to red or far red light	2.73E-02
149	GO:0007267: cell-cell signaling	2.85E-02
150	GO:0009734: auxin-activated signaling pathway	2.85E-02
151	GO:0051607: defense response to virus	2.98E-02
152	GO:0010027: thylakoid membrane organization	3.10E-02
153	GO:0042128: nitrate assimilation	3.35E-02
154	GO:0009737: response to abscisic acid	3.37E-02
155	GO:0009738: abscisic acid-activated signaling pathway	3.65E-02
156	GO:0009817: defense response to fungus, incompatible interaction	3.75E-02
157	GO:0030244: cellulose biosynthetic process	3.75E-02
158	GO:0010311: lateral root formation	3.88E-02
159	GO:0009611: response to wounding	3.90E-02
160	GO:0009834: plant-type secondary cell wall biogenesis	4.01E-02
161	GO:0009407: toxin catabolic process	4.01E-02
162	GO:0010218: response to far red light	4.01E-02
163	GO:0010043: response to zinc ion	4.15E-02
164	GO:0007568: aging	4.15E-02
165	GO:0048527: lateral root development	4.15E-02
166	GO:0006865: amino acid transport	4.29E-02
167	GO:0009867: jasmonic acid mediated signaling pathway	4.43E-02
168	GO:0045087: innate immune response	4.43E-02
169	GO:0009637: response to blue light	4.43E-02
170	GO:0030001: metal ion transport	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
3	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
6	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
7	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	8.80E-06
8	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.47E-05
9	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.33E-05
10	GO:0005227: calcium activated cation channel activity	2.41E-04
11	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.41E-04
12	GO:0080132: fatty acid alpha-hydroxylase activity	2.41E-04
13	GO:0008568: microtubule-severing ATPase activity	2.41E-04
14	GO:0004476: mannose-6-phosphate isomerase activity	2.41E-04
15	GO:0015250: water channel activity	4.19E-04
16	GO:0003839: gamma-glutamylcyclotransferase activity	5.34E-04
17	GO:0003938: IMP dehydrogenase activity	5.34E-04
18	GO:0033201: alpha-1,4-glucan synthase activity	5.34E-04
19	GO:0030385: ferredoxin:thioredoxin reductase activity	5.34E-04
20	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.34E-04
21	GO:0004565: beta-galactosidase activity	6.81E-04
22	GO:0010329: auxin efflux transmembrane transporter activity	6.81E-04
23	GO:0004373: glycogen (starch) synthase activity	8.68E-04
24	GO:0016992: lipoate synthase activity	8.68E-04
25	GO:0004075: biotin carboxylase activity	8.68E-04
26	GO:0030267: glyoxylate reductase (NADP) activity	8.68E-04
27	GO:0005528: FK506 binding	1.05E-03
28	GO:0052655: L-valine transaminase activity	1.24E-03
29	GO:0001872: (1->3)-beta-D-glucan binding	1.24E-03
30	GO:0003878: ATP citrate synthase activity	1.24E-03
31	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.24E-03
32	GO:0052656: L-isoleucine transaminase activity	1.24E-03
33	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.24E-03
34	GO:0052654: L-leucine transaminase activity	1.24E-03
35	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.31E-03
36	GO:0016836: hydro-lyase activity	1.65E-03
37	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.65E-03
38	GO:0004084: branched-chain-amino-acid transaminase activity	1.65E-03
39	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.65E-03
40	GO:0009011: starch synthase activity	1.65E-03
41	GO:0003989: acetyl-CoA carboxylase activity	2.11E-03
42	GO:0008725: DNA-3-methyladenine glycosylase activity	2.11E-03
43	GO:0004040: amidase activity	2.11E-03
44	GO:0004623: phospholipase A2 activity	2.11E-03
45	GO:0004629: phospholipase C activity	2.60E-03
46	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.60E-03
47	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.60E-03
48	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.60E-03
49	GO:0008200: ion channel inhibitor activity	2.60E-03
50	GO:0051015: actin filament binding	2.89E-03
51	GO:0004747: ribokinase activity	3.12E-03
52	GO:0005261: cation channel activity	3.12E-03
53	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.12E-03
54	GO:0004435: phosphatidylinositol phospholipase C activity	3.12E-03
55	GO:0005200: structural constituent of cytoskeleton	3.26E-03
56	GO:0004427: inorganic diphosphatase activity	3.68E-03
57	GO:0043295: glutathione binding	3.68E-03
58	GO:0004034: aldose 1-epimerase activity	4.27E-03
59	GO:0004033: aldo-keto reductase (NADP) activity	4.27E-03
60	GO:0008865: fructokinase activity	4.27E-03
61	GO:0030247: polysaccharide binding	4.31E-03
62	GO:0003924: GTPase activity	4.38E-03
63	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.52E-03
64	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	5.54E-03
65	GO:0009672: auxin:proton symporter activity	6.21E-03
66	GO:0004568: chitinase activity	6.92E-03
67	GO:0015020: glucuronosyltransferase activity	6.92E-03
68	GO:0047372: acylglycerol lipase activity	7.65E-03
69	GO:0008378: galactosyltransferase activity	8.41E-03
70	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	8.41E-03
71	GO:0005262: calcium channel activity	9.20E-03
72	GO:0016787: hydrolase activity	1.22E-02
73	GO:0045735: nutrient reservoir activity	1.25E-02
74	GO:0003714: transcription corepressor activity	1.26E-02
75	GO:0008324: cation transmembrane transporter activity	1.35E-02
76	GO:0004871: signal transducer activity	1.51E-02
77	GO:0030246: carbohydrate binding	1.64E-02
78	GO:0030570: pectate lyase activity	1.64E-02
79	GO:0008810: cellulase activity	1.64E-02
80	GO:0005516: calmodulin binding	1.93E-02
81	GO:0016853: isomerase activity	2.16E-02
82	GO:0005355: glucose transmembrane transporter activity	2.16E-02
83	GO:0005525: GTP binding	2.21E-02
84	GO:0048038: quinone binding	2.38E-02
85	GO:0005509: calcium ion binding	2.66E-02
86	GO:0016791: phosphatase activity	2.73E-02
87	GO:0016413: O-acetyltransferase activity	2.98E-02
88	GO:0008375: acetylglucosaminyltransferase activity	3.35E-02
89	GO:0102483: scopolin beta-glucosidase activity	3.48E-02
90	GO:0004721: phosphoprotein phosphatase activity	3.48E-02
91	GO:0005096: GTPase activator activity	3.88E-02
92	GO:0016788: hydrolase activity, acting on ester bonds	4.09E-02
93	GO:0030145: manganese ion binding	4.15E-02
94	GO:0003993: acid phosphatase activity	4.57E-02
95	GO:0008422: beta-glucosidase activity	4.71E-02
96	GO:0051539: 4 iron, 4 sulfur cluster binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009570: chloroplast stroma	7.80E-08
3	GO:0031977: thylakoid lumen	3.12E-07
4	GO:0048046: apoplast	3.53E-07
5	GO:0009507: chloroplast	6.31E-07
6	GO:0009534: chloroplast thylakoid	6.86E-07
7	GO:0009543: chloroplast thylakoid lumen	5.90E-06
8	GO:0005886: plasma membrane	6.91E-06
9	GO:0005618: cell wall	1.77E-05
10	GO:0009941: chloroplast envelope	3.90E-05
11	GO:0005576: extracellular region	9.76E-05
12	GO:0009535: chloroplast thylakoid membrane	1.41E-04
13	GO:0009579: thylakoid	2.36E-04
14	GO:0009505: plant-type cell wall	3.75E-04
15	GO:0005875: microtubule associated complex	9.50E-04
16	GO:0009654: photosystem II oxygen evolving complex	1.16E-03
17	GO:0015630: microtubule cytoskeleton	1.24E-03
18	GO:0032432: actin filament bundle	1.24E-03
19	GO:0009346: citrate lyase complex	1.24E-03
20	GO:0019898: extrinsic component of membrane	2.37E-03
21	GO:0016020: membrane	3.28E-03
22	GO:0009506: plasmodesma	4.15E-03
23	GO:0009501: amyloplast	4.27E-03
24	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.54E-03
25	GO:0045298: tubulin complex	5.54E-03
26	GO:0005887: integral component of plasma membrane	6.96E-03
27	GO:0005884: actin filament	7.65E-03
28	GO:0030095: chloroplast photosystem II	1.00E-02
29	GO:0042651: thylakoid membrane	1.35E-02
30	GO:0031410: cytoplasmic vesicle	1.54E-02
31	GO:0015629: actin cytoskeleton	1.64E-02
32	GO:0010287: plastoglobule	1.78E-02
33	GO:0031225: anchored component of membrane	2.04E-02
34	GO:0009707: chloroplast outer membrane	3.75E-02
35	GO:0000151: ubiquitin ligase complex	3.75E-02
36	GO:0005874: microtubule	4.80E-02
37	GO:0031969: chloroplast membrane	4.96E-02