Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G16410

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0034337: RNA folding0.00E+00
3GO:0010275: NAD(P)H dehydrogenase complex assembly0.00E+00
4GO:0002184: cytoplasmic translational termination0.00E+00
5GO:1901918: negative regulation of exoribonuclease activity0.00E+00
6GO:2000121: regulation of removal of superoxide radicals0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0042821: pyridoxal biosynthetic process0.00E+00
10GO:0005996: monosaccharide metabolic process0.00E+00
11GO:0016553: base conversion or substitution editing0.00E+00
12GO:0018023: peptidyl-lysine trimethylation0.00E+00
13GO:0042820: vitamin B6 catabolic process0.00E+00
14GO:0006412: translation5.26E-15
15GO:0015979: photosynthesis2.03E-14
16GO:0042254: ribosome biogenesis8.18E-12
17GO:0032544: plastid translation9.48E-11
18GO:0009773: photosynthetic electron transport in photosystem I1.30E-09
19GO:0015995: chlorophyll biosynthetic process2.13E-06
20GO:0010207: photosystem II assembly1.12E-05
21GO:0010027: thylakoid membrane organization2.31E-05
22GO:0009735: response to cytokinin3.03E-05
23GO:0090391: granum assembly4.08E-05
24GO:0006518: peptide metabolic process4.08E-05
25GO:0000413: protein peptidyl-prolyl isomerization7.86E-05
26GO:2001141: regulation of RNA biosynthetic process8.72E-05
27GO:0009409: response to cold1.15E-04
28GO:0009658: chloroplast organization1.44E-04
29GO:0006546: glycine catabolic process1.51E-04
30GO:0006810: transport1.57E-04
31GO:0006636: unsaturated fatty acid biosynthetic process3.04E-04
32GO:0042549: photosystem II stabilization3.24E-04
33GO:0006655: phosphatidylglycerol biosynthetic process3.24E-04
34GO:0018298: protein-chromophore linkage3.94E-04
35GO:0010019: chloroplast-nucleus signaling pathway4.33E-04
36GO:0061077: chaperone-mediated protein folding4.53E-04
37GO:0000481: maturation of 5S rRNA5.26E-04
38GO:1904964: positive regulation of phytol biosynthetic process5.26E-04
39GO:0042371: vitamin K biosynthetic process5.26E-04
40GO:0071461: cellular response to redox state5.26E-04
41GO:1902458: positive regulation of stomatal opening5.26E-04
42GO:0071588: hydrogen peroxide mediated signaling pathway5.26E-04
43GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.26E-04
44GO:0000476: maturation of 4.5S rRNA5.26E-04
45GO:0009443: pyridoxal 5'-phosphate salvage5.26E-04
46GO:0000967: rRNA 5'-end processing5.26E-04
47GO:0043489: RNA stabilization5.26E-04
48GO:1904966: positive regulation of vitamin E biosynthetic process5.26E-04
49GO:0009772: photosynthetic electron transport in photosystem II5.54E-04
50GO:0071482: cellular response to light stimulus8.42E-04
51GO:0010114: response to red light8.45E-04
52GO:0010206: photosystem II repair1.01E-03
53GO:1903426: regulation of reactive oxygen species biosynthetic process1.13E-03
54GO:0030388: fructose 1,6-bisphosphate metabolic process1.13E-03
55GO:0034470: ncRNA processing1.13E-03
56GO:1902326: positive regulation of chlorophyll biosynthetic process1.13E-03
57GO:0080005: photosystem stoichiometry adjustment1.13E-03
58GO:1900871: chloroplast mRNA modification1.13E-03
59GO:0034755: iron ion transmembrane transport1.13E-03
60GO:0018026: peptidyl-lysine monomethylation1.13E-03
61GO:0010205: photoinhibition1.18E-03
62GO:0042742: defense response to bacterium1.30E-03
63GO:0019684: photosynthesis, light reaction1.60E-03
64GO:0006352: DNA-templated transcription, initiation1.60E-03
65GO:0016024: CDP-diacylglycerol biosynthetic process1.83E-03
66GO:0006000: fructose metabolic process1.85E-03
67GO:0006954: inflammatory response1.85E-03
68GO:0009767: photosynthetic electron transport chain2.08E-03
69GO:0051513: regulation of monopolar cell growth2.69E-03
70GO:0009152: purine ribonucleotide biosynthetic process2.69E-03
71GO:0046653: tetrahydrofolate metabolic process2.69E-03
72GO:0016556: mRNA modification2.69E-03
73GO:0009768: photosynthesis, light harvesting in photosystem I3.60E-03
74GO:0010037: response to carbon dioxide3.62E-03
75GO:0015976: carbon utilization3.62E-03
76GO:0019464: glycine decarboxylation via glycine cleavage system3.62E-03
77GO:0045727: positive regulation of translation3.62E-03
78GO:0015994: chlorophyll metabolic process3.62E-03
79GO:2000122: negative regulation of stomatal complex development3.62E-03
80GO:0006457: protein folding3.85E-03
81GO:0009790: embryo development4.08E-03
82GO:0045038: protein import into chloroplast thylakoid membrane4.65E-03
83GO:0031365: N-terminal protein amino acid modification4.65E-03
84GO:0009247: glycolipid biosynthetic process4.65E-03
85GO:0034052: positive regulation of plant-type hypersensitive response4.65E-03
86GO:0006564: L-serine biosynthetic process4.65E-03
87GO:0009306: protein secretion5.15E-03
88GO:0032973: amino acid export5.76E-03
89GO:0010190: cytochrome b6f complex assembly5.76E-03
90GO:0010555: response to mannitol6.95E-03
91GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity6.95E-03
92GO:0042026: protein refolding6.95E-03
93GO:1901259: chloroplast rRNA processing6.95E-03
94GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.95E-03
95GO:0006458: 'de novo' protein folding6.95E-03
96GO:0000302: response to reactive oxygen species8.07E-03
97GO:0009395: phospholipid catabolic process8.23E-03
98GO:0043090: amino acid import8.23E-03
99GO:0010196: nonphotochemical quenching8.23E-03
100GO:0006821: chloride transport8.23E-03
101GO:0009645: response to low light intensity stimulus8.23E-03
102GO:0006400: tRNA modification8.23E-03
103GO:2000070: regulation of response to water deprivation9.58E-03
104GO:0048564: photosystem I assembly9.58E-03
105GO:0009642: response to light intensity9.58E-03
106GO:0010439: regulation of glucosinolate biosynthetic process9.58E-03
107GO:0009850: auxin metabolic process9.58E-03
108GO:0043068: positive regulation of programmed cell death9.58E-03
109GO:0019375: galactolipid biosynthetic process9.58E-03
110GO:0032508: DNA duplex unwinding9.58E-03
111GO:0009793: embryo development ending in seed dormancy1.10E-02
112GO:0017004: cytochrome complex assembly1.10E-02
113GO:0006002: fructose 6-phosphate metabolic process1.10E-02
114GO:0022900: electron transport chain1.10E-02
115GO:0009657: plastid organization1.10E-02
116GO:0000373: Group II intron splicing1.25E-02
117GO:0009051: pentose-phosphate shunt, oxidative branch1.25E-02
118GO:0009821: alkaloid biosynthetic process1.25E-02
119GO:0080144: amino acid homeostasis1.25E-02
120GO:0006783: heme biosynthetic process1.25E-02
121GO:0042128: nitrate assimilation1.31E-02
122GO:0055114: oxidation-reduction process1.40E-02
123GO:0009638: phototropism1.41E-02
124GO:0006782: protoporphyrinogen IX biosynthetic process1.57E-02
125GO:0009870: defense response signaling pathway, resistance gene-dependent1.57E-02
126GO:0010218: response to far red light1.69E-02
127GO:0042744: hydrogen peroxide catabolic process1.70E-02
128GO:0018119: peptidyl-cysteine S-nitrosylation1.74E-02
129GO:0009089: lysine biosynthetic process via diaminopimelate1.74E-02
130GO:0009073: aromatic amino acid family biosynthetic process1.74E-02
131GO:0043085: positive regulation of catalytic activity1.74E-02
132GO:0006415: translational termination1.74E-02
133GO:0006879: cellular iron ion homeostasis1.74E-02
134GO:0000272: polysaccharide catabolic process1.74E-02
135GO:0009631: cold acclimation1.78E-02
136GO:0009637: response to blue light1.95E-02
137GO:0034599: cellular response to oxidative stress2.04E-02
138GO:0006094: gluconeogenesis2.10E-02
139GO:0005986: sucrose biosynthetic process2.10E-02
140GO:0010628: positive regulation of gene expression2.10E-02
141GO:0006006: glucose metabolic process2.10E-02
142GO:0007623: circadian rhythm2.17E-02
143GO:0030001: metal ion transport2.22E-02
144GO:0009451: RNA modification2.24E-02
145GO:0010020: chloroplast fission2.29E-02
146GO:0019253: reductive pentose-phosphate cycle2.29E-02
147GO:0009644: response to high light intensity2.72E-02
148GO:0019344: cysteine biosynthetic process2.89E-02
149GO:0000027: ribosomal large subunit assembly2.89E-02
150GO:0006418: tRNA aminoacylation for protein translation3.10E-02
151GO:0031408: oxylipin biosynthetic process3.32E-02
152GO:0006364: rRNA processing3.39E-02
153GO:0010017: red or far-red light signaling pathway3.54E-02
154GO:0009814: defense response, incompatible interaction3.54E-02
155GO:0016226: iron-sulfur cluster assembly3.54E-02
156GO:0006417: regulation of translation3.75E-02
157GO:0006012: galactose metabolic process3.77E-02
158GO:0016117: carotenoid biosynthetic process4.23E-02
159GO:0042631: cellular response to water deprivation4.47E-02
160GO:0009958: positive gravitropism4.72E-02
161GO:0006396: RNA processing4.95E-02
162GO:0015986: ATP synthesis coupled proton transport4.97E-02
163GO:0006814: sodium ion transport4.97E-02
RankGO TermAdjusted P value
1GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
2GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
3GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
4GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
5GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
6GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
7GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
8GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
9GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
12GO:0019843: rRNA binding2.00E-26
13GO:0003735: structural constituent of ribosome1.03E-18
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.67E-10
15GO:0016851: magnesium chelatase activity6.71E-07
16GO:0005528: FK506 binding7.73E-07
17GO:0001053: plastid sigma factor activity1.51E-04
18GO:0016987: sigma factor activity1.51E-04
19GO:0016168: chlorophyll binding2.80E-04
20GO:0004130: cytochrome-c peroxidase activity3.24E-04
21GO:0003723: RNA binding3.49E-04
22GO:0051920: peroxiredoxin activity4.33E-04
23GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.33E-04
24GO:0004222: metalloendopeptidase activity4.60E-04
25GO:0004328: formamidase activity5.26E-04
26GO:0046906: tetrapyrrole binding5.26E-04
27GO:0052638: indole-3-butyrate beta-glucosyltransferase activity5.26E-04
28GO:0004853: uroporphyrinogen decarboxylase activity5.26E-04
29GO:0045485: omega-6 fatty acid desaturase activity5.26E-04
30GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.26E-04
31GO:0019899: enzyme binding5.54E-04
32GO:0016209: antioxidant activity6.91E-04
33GO:0004033: aldo-keto reductase (NADP) activity6.91E-04
34GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.42E-04
35GO:0051537: 2 iron, 2 sulfur cluster binding9.51E-04
36GO:0005509: calcium ion binding1.06E-03
37GO:0047746: chlorophyllase activity1.13E-03
38GO:0042389: omega-3 fatty acid desaturase activity1.13E-03
39GO:0010297: heteropolysaccharide binding1.13E-03
40GO:0009977: proton motive force dependent protein transmembrane transporter activity1.13E-03
41GO:0004617: phosphoglycerate dehydrogenase activity1.13E-03
42GO:0004047: aminomethyltransferase activity1.13E-03
43GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.13E-03
44GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.13E-03
45GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.13E-03
46GO:0030267: glyoxylate reductase (NADP) activity1.85E-03
47GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.85E-03
48GO:0070402: NADPH binding1.85E-03
49GO:0008864: formyltetrahydrofolate deformylase activity1.85E-03
50GO:0002161: aminoacyl-tRNA editing activity1.85E-03
51GO:0008266: poly(U) RNA binding2.35E-03
52GO:0043023: ribosomal large subunit binding2.69E-03
53GO:0008097: 5S rRNA binding2.69E-03
54GO:0008508: bile acid:sodium symporter activity2.69E-03
55GO:0004375: glycine dehydrogenase (decarboxylating) activity2.69E-03
56GO:0035250: UDP-galactosyltransferase activity2.69E-03
57GO:0016149: translation release factor activity, codon specific2.69E-03
58GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.69E-03
59GO:0031409: pigment binding2.94E-03
60GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.62E-03
61GO:0016279: protein-lysine N-methyltransferase activity3.62E-03
62GO:0004345: glucose-6-phosphate dehydrogenase activity3.62E-03
63GO:0043495: protein anchor3.62E-03
64GO:0022891: substrate-specific transmembrane transporter activity4.73E-03
65GO:0005247: voltage-gated chloride channel activity5.76E-03
66GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.76E-03
67GO:0042578: phosphoric ester hydrolase activity5.76E-03
68GO:0016688: L-ascorbate peroxidase activity5.76E-03
69GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.95E-03
70GO:0008235: metalloexopeptidase activity8.23E-03
71GO:0009055: electron carrier activity8.67E-03
72GO:0004034: aldose 1-epimerase activity9.58E-03
73GO:0004601: peroxidase activity1.03E-02
74GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.25E-02
75GO:0003747: translation release factor activity1.25E-02
76GO:0016844: strictosidine synthase activity1.41E-02
77GO:0005381: iron ion transmembrane transporter activity1.41E-02
78GO:0004177: aminopeptidase activity1.74E-02
79GO:0044183: protein binding involved in protein folding1.74E-02
80GO:0008378: galactosyltransferase activity1.92E-02
81GO:0000049: tRNA binding1.92E-02
82GO:0004089: carbonate dehydratase activity2.10E-02
83GO:0031072: heat shock protein binding2.10E-02
84GO:0004022: alcohol dehydrogenase (NAD) activity2.10E-02
85GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.29E-02
86GO:0051536: iron-sulfur cluster binding2.89E-02
87GO:0043424: protein histidine kinase binding3.10E-02
88GO:0003824: catalytic activity3.16E-02
89GO:0004176: ATP-dependent peptidase activity3.32E-02
90GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.39E-02
91GO:0016788: hydrolase activity, acting on ester bonds3.83E-02
92GO:0003727: single-stranded RNA binding4.00E-02
93GO:0003756: protein disulfide isomerase activity4.00E-02
94GO:0004812: aminoacyl-tRNA ligase activity4.23E-02
95GO:0016491: oxidoreductase activity4.41E-02
96GO:0046872: metal ion binding4.55E-02
97GO:0008080: N-acetyltransferase activity4.72E-02
98GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.72E-02
99GO:0051082: unfolded protein binding4.81E-02
100GO:0016853: isomerase activity4.97E-02
101GO:0050662: coenzyme binding4.97E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009507: chloroplast6.59E-121
5GO:0009535: chloroplast thylakoid membrane1.18E-55
6GO:0009570: chloroplast stroma1.47E-55
7GO:0009941: chloroplast envelope7.74E-49
8GO:0009534: chloroplast thylakoid8.50E-40
9GO:0009543: chloroplast thylakoid lumen1.24E-38
10GO:0009579: thylakoid5.43E-37
11GO:0031977: thylakoid lumen2.24E-22
12GO:0005840: ribosome6.50E-17
13GO:0009654: photosystem II oxygen evolving complex1.04E-13
14GO:0019898: extrinsic component of membrane5.35E-12
15GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.03E-10
16GO:0030095: chloroplast photosystem II5.49E-09
17GO:0010007: magnesium chelatase complex1.41E-07
18GO:0009706: chloroplast inner membrane6.08E-07
19GO:0000311: plastid large ribosomal subunit6.37E-06
20GO:0000312: plastid small ribosomal subunit1.12E-05
21GO:0010287: plastoglobule1.36E-05
22GO:0009523: photosystem II1.18E-04
23GO:0031969: chloroplast membrane2.49E-04
24GO:0015934: large ribosomal subunit4.96E-04
25GO:0009547: plastid ribosome5.26E-04
26GO:0009782: photosystem I antenna complex5.26E-04
27GO:0009515: granal stacked thylakoid5.26E-04
28GO:0009533: chloroplast stromal thylakoid5.54E-04
29GO:0000427: plastid-encoded plastid RNA polymerase complex1.13E-03
30GO:0042170: plastid membrane1.13E-03
31GO:0016020: membrane1.39E-03
32GO:0010319: stromule1.54E-03
33GO:0032040: small-subunit processome1.83E-03
34GO:0033281: TAT protein transport complex1.85E-03
35GO:0009536: plastid2.21E-03
36GO:0030076: light-harvesting complex2.63E-03
37GO:0005960: glycine cleavage complex2.69E-03
38GO:0042651: thylakoid membrane3.60E-03
39GO:0015935: small ribosomal subunit3.96E-03
40GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)5.76E-03
41GO:0034707: chloride channel complex5.76E-03
42GO:0022626: cytosolic ribosome6.30E-03
43GO:0009522: photosystem I7.01E-03
44GO:0009295: nucleoid1.04E-02
45GO:0030529: intracellular ribonucleoprotein complex1.17E-02
46GO:0005763: mitochondrial small ribosomal subunit1.25E-02
47GO:0043231: intracellular membrane-bounded organelle2.94E-02
48GO:0022627: cytosolic small ribosomal subunit3.09E-02
49GO:0009532: plastid stroma3.32E-02
<
Gene type



Gene DE type