co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G15630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:0005996: monosaccharide metabolic process	0.00E+00
4	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
5	GO:0042820: vitamin B6 catabolic process	0.00E+00
6	GO:0015979: photosynthesis	4.05E-15
7	GO:0090391: granum assembly	3.93E-09
8	GO:0009773: photosynthetic electron transport in photosystem I	5.96E-08
9	GO:0009735: response to cytokinin	6.84E-08
10	GO:0010027: thylakoid membrane organization	1.51E-07
11	GO:0015995: chlorophyll biosynthetic process	2.38E-07
12	GO:0010196: nonphotochemical quenching	7.37E-07
13	GO:0032544: plastid translation	1.67E-06
14	GO:0010207: photosystem II assembly	1.13E-05
15	GO:0019464: glycine decarboxylation via glycine cleavage system	1.55E-05
16	GO:1902458: positive regulation of stomatal opening	1.37E-04
17	GO:0071277: cellular response to calcium ion	1.37E-04
18	GO:0009443: pyridoxal 5'-phosphate salvage	1.37E-04
19	GO:0015671: oxygen transport	1.37E-04
20	GO:1904966: positive regulation of vitamin E biosynthetic process	1.37E-04
21	GO:1904964: positive regulation of phytol biosynthetic process	1.37E-04
22	GO:0006412: translation	1.56E-04
23	GO:0006729: tetrahydrobiopterin biosynthetic process	3.16E-04
24	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.16E-04
25	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.16E-04
26	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.16E-04
27	GO:0019253: reductive pentose-phosphate cycle	3.55E-04
28	GO:0006000: fructose metabolic process	5.20E-04
29	GO:0009658: chloroplast organization	5.26E-04
30	GO:0042742: defense response to bacterium	5.65E-04
31	GO:0009152: purine ribonucleotide biosynthetic process	7.44E-04
32	GO:0046653: tetrahydrofolate metabolic process	7.44E-04
33	GO:0009052: pentose-phosphate shunt, non-oxidative branch	7.44E-04
34	GO:0010731: protein glutathionylation	7.44E-04
35	GO:0015976: carbon utilization	9.85E-04
36	GO:0009765: photosynthesis, light harvesting	9.85E-04
37	GO:0045727: positive regulation of translation	9.85E-04
38	GO:2000122: negative regulation of stomatal complex development	9.85E-04
39	GO:0006546: glycine catabolic process	9.85E-04
40	GO:0010037: response to carbon dioxide	9.85E-04
41	GO:0031365: N-terminal protein amino acid modification	1.25E-03
42	GO:0016123: xanthophyll biosynthetic process	1.25E-03
43	GO:0034052: positive regulation of plant-type hypersensitive response	1.25E-03
44	GO:0016120: carotene biosynthetic process	1.25E-03
45	GO:0045038: protein import into chloroplast thylakoid membrane	1.25E-03
46	GO:0010190: cytochrome b6f complex assembly	1.53E-03
47	GO:0010555: response to mannitol	1.83E-03
48	GO:0071470: cellular response to osmotic stress	1.83E-03
49	GO:0010189: vitamin E biosynthetic process	1.83E-03
50	GO:0055114: oxidation-reduction process	1.89E-03
51	GO:0009772: photosynthetic electron transport in photosystem II	2.15E-03
52	GO:0018298: protein-chromophore linkage	2.18E-03
53	GO:0048564: photosystem I assembly	2.49E-03
54	GO:0009819: drought recovery	2.49E-03
55	GO:0009642: response to light intensity	2.49E-03
56	GO:0043068: positive regulation of programmed cell death	2.49E-03
57	GO:0009704: de-etiolation	2.49E-03
58	GO:2000070: regulation of response to water deprivation	2.49E-03
59	GO:0009853: photorespiration	2.75E-03
60	GO:0017004: cytochrome complex assembly	2.85E-03
61	GO:0006002: fructose 6-phosphate metabolic process	2.85E-03
62	GO:0015996: chlorophyll catabolic process	2.85E-03
63	GO:0007186: G-protein coupled receptor signaling pathway	2.85E-03
64	GO:0042254: ribosome biogenesis	3.21E-03
65	GO:0009245: lipid A biosynthetic process	3.22E-03
66	GO:0019432: triglyceride biosynthetic process	3.22E-03
67	GO:0090333: regulation of stomatal closure	3.22E-03
68	GO:0009409: response to cold	3.91E-03
69	GO:0080167: response to karrikin	4.12E-03
70	GO:0019684: photosynthesis, light reaction	4.42E-03
71	GO:0000272: polysaccharide catabolic process	4.42E-03
72	GO:0018119: peptidyl-cysteine S-nitrosylation	4.42E-03
73	GO:0045037: protein import into chloroplast stroma	4.85E-03
74	GO:0009725: response to hormone	5.30E-03
75	GO:0006094: gluconeogenesis	5.30E-03
76	GO:0009767: photosynthetic electron transport chain	5.30E-03
77	GO:0005986: sucrose biosynthetic process	5.30E-03
78	GO:0010628: positive regulation of gene expression	5.30E-03
79	GO:0006006: glucose metabolic process	5.30E-03
80	GO:0010020: chloroplast fission	5.76E-03
81	GO:0010167: response to nitrate	6.23E-03
82	GO:0006636: unsaturated fatty acid biosynthetic process	6.71E-03
83	GO:0019344: cysteine biosynthetic process	7.22E-03
84	GO:0000027: ribosomal large subunit assembly	7.22E-03
85	GO:0009768: photosynthesis, light harvesting in photosystem I	7.73E-03
86	GO:0061077: chaperone-mediated protein folding	8.26E-03
87	GO:0009814: defense response, incompatible interaction	8.79E-03
88	GO:0016117: carotenoid biosynthetic process	1.05E-02
89	GO:0006633: fatty acid biosynthetic process	1.06E-02
90	GO:0042631: cellular response to water deprivation	1.11E-02
91	GO:0042335: cuticle development	1.11E-02
92	GO:0000413: protein peptidyl-prolyl isomerization	1.11E-02
93	GO:0010182: sugar mediated signaling pathway	1.17E-02
94	GO:0015986: ATP synthesis coupled proton transport	1.23E-02
95	GO:0019252: starch biosynthetic process	1.29E-02
96	GO:0009627: systemic acquired resistance	1.90E-02
97	GO:0042128: nitrate assimilation	1.90E-02
98	GO:0010411: xyloglucan metabolic process	1.98E-02
99	GO:0009817: defense response to fungus, incompatible interaction	2.12E-02
100	GO:0010218: response to far red light	2.28E-02
101	GO:0010119: regulation of stomatal movement	2.36E-02
102	GO:0009637: response to blue light	2.51E-02
103	GO:0016051: carbohydrate biosynthetic process	2.51E-02
104	GO:0034599: cellular response to oxidative stress	2.60E-02
105	GO:0045454: cell redox homeostasis	2.70E-02
106	GO:0030001: metal ion transport	2.76E-02
107	GO:0006631: fatty acid metabolic process	2.84E-02
108	GO:0009744: response to sucrose	3.01E-02
109	GO:0010114: response to red light	3.01E-02
110	GO:0042546: cell wall biogenesis	3.10E-02
111	GO:0006364: rRNA processing	3.72E-02
112	GO:0006096: glycolytic process	4.19E-02
113	GO:0009626: plant-type hypersensitive response	4.39E-02
114	GO:0015031: protein transport	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0051738: xanthophyll binding	0.00E+00
2	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
5	GO:0090711: FMN hydrolase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0045550: geranylgeranyl reductase activity	0.00E+00
9	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
10	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
11	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
12	GO:0046408: chlorophyll synthetase activity	0.00E+00
13	GO:0019843: rRNA binding	5.43E-07
14	GO:0003735: structural constituent of ribosome	3.93E-06
15	GO:0004375: glycine dehydrogenase (decarboxylating) activity	8.27E-06
16	GO:0003959: NADPH dehydrogenase activity	2.54E-05
17	GO:0051920: peroxiredoxin activity	5.36E-05
18	GO:0016209: antioxidant activity	9.31E-05
19	GO:0005509: calcium ion binding	9.39E-05
20	GO:0005344: oxygen transporter activity	1.37E-04
21	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.37E-04
22	GO:0016168: chlorophyll binding	1.56E-04
23	GO:0042389: omega-3 fatty acid desaturase activity	3.16E-04
24	GO:0010297: heteropolysaccharide binding	3.16E-04
25	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.16E-04
26	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.16E-04
27	GO:0016630: protochlorophyllide reductase activity	3.16E-04
28	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.92E-04
29	GO:0005528: FK506 binding	4.93E-04
30	GO:0070402: NADPH binding	5.20E-04
31	GO:0008864: formyltetrahydrofolate deformylase activity	5.20E-04
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.20E-04
33	GO:0004324: ferredoxin-NADP+ reductase activity	5.20E-04
34	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.20E-04
35	GO:0004751: ribose-5-phosphate isomerase activity	5.20E-04
36	GO:0045174: glutathione dehydrogenase (ascorbate) activity	5.20E-04
37	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	5.20E-04
38	GO:0022891: substrate-specific transmembrane transporter activity	7.07E-04
39	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.44E-04
40	GO:1990137: plant seed peroxidase activity	9.85E-04
41	GO:0043495: protein anchor	9.85E-04
42	GO:0042578: phosphoric ester hydrolase activity	1.53E-03
43	GO:0031177: phosphopantetheine binding	1.53E-03
44	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.83E-03
45	GO:0000035: acyl binding	1.83E-03
46	GO:0008235: metalloexopeptidase activity	2.15E-03
47	GO:0019899: enzyme binding	2.15E-03
48	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.49E-03
49	GO:0004033: aldo-keto reductase (NADP) activity	2.49E-03
50	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.85E-03
51	GO:0051537: 2 iron, 2 sulfur cluster binding	3.82E-03
52	GO:0004177: aminopeptidase activity	4.42E-03
53	GO:0004089: carbonate dehydratase activity	5.30E-03
54	GO:0008266: poly(U) RNA binding	5.76E-03
55	GO:0031409: pigment binding	6.71E-03
56	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.69E-03
57	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.17E-02
58	GO:0050662: coenzyme binding	1.23E-02
59	GO:0004872: receptor activity	1.29E-02
60	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.36E-02
61	GO:0016491: oxidoreductase activity	1.38E-02
62	GO:0042802: identical protein binding	1.49E-02
63	GO:0008237: metallopeptidase activity	1.62E-02
64	GO:0004601: peroxidase activity	1.82E-02
65	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.98E-02
66	GO:0004222: metalloendopeptidase activity	2.28E-02
67	GO:0050661: NADP binding	2.76E-02
68	GO:0051539: 4 iron, 4 sulfur cluster binding	2.76E-02
69	GO:0004364: glutathione transferase activity	2.93E-02
70	GO:0043621: protein self-association	3.19E-02
71	GO:0005198: structural molecule activity	3.27E-02
72	GO:0051287: NAD binding	3.45E-02
73	GO:0009055: electron carrier activity	3.56E-02
74	GO:0003690: double-stranded DNA binding	3.82E-02
75	GO:0022857: transmembrane transporter activity	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	2.59E-55
3	GO:0009535: chloroplast thylakoid membrane	3.26E-38
4	GO:0009579: thylakoid	1.00E-28
5	GO:0009570: chloroplast stroma	2.80E-25
6	GO:0009534: chloroplast thylakoid	7.32E-24
7	GO:0009941: chloroplast envelope	2.09E-23
8	GO:0009543: chloroplast thylakoid lumen	5.48E-22
9	GO:0031977: thylakoid lumen	2.30E-15
10	GO:0009654: photosystem II oxygen evolving complex	4.78E-11
11	GO:0019898: extrinsic component of membrane	6.25E-10
12	GO:0010287: plastoglobule	1.62E-08
13	GO:0030095: chloroplast photosystem II	1.54E-07
14	GO:0005840: ribosome	2.24E-07
15	GO:0010319: stromule	4.81E-06
16	GO:0005960: glycine cleavage complex	8.27E-06
17	GO:0042651: thylakoid membrane	2.33E-05
18	GO:0009523: photosystem II	7.53E-05
19	GO:0009706: chloroplast inner membrane	1.03E-04
20	GO:0031969: chloroplast membrane	1.07E-04
21	GO:0009344: nitrite reductase complex [NAD(P)H]	1.37E-04
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.44E-04
23	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.16E-04
24	GO:0042170: plastid membrane	3.16E-04
25	GO:0009528: plastid inner membrane	5.20E-04
26	GO:0009532: plastid stroma	5.96E-04
27	GO:0048046: apoplast	7.08E-04
28	GO:0009527: plastid outer membrane	9.85E-04
29	GO:0009517: PSII associated light-harvesting complex II	9.85E-04
30	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.53E-03
31	GO:0009533: chloroplast stromal thylakoid	2.15E-03
32	GO:0009538: photosystem I reaction center	2.49E-03
33	GO:0005811: lipid particle	2.85E-03
34	GO:0000311: plastid large ribosomal subunit	4.85E-03
35	GO:0016020: membrane	5.24E-03
36	GO:0030076: light-harvesting complex	6.23E-03
37	GO:0015935: small ribosomal subunit	8.26E-03
38	GO:0009522: photosystem I	1.23E-02
39	GO:0009707: chloroplast outer membrane	2.12E-02
40	GO:0015934: large ribosomal subunit	2.36E-02