co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G12970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006223: uracil salvage	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0097164: ammonium ion metabolic process	0.00E+00
5	GO:0032544: plastid translation	5.25E-09
6	GO:0010236: plastoquinone biosynthetic process	1.69E-05
7	GO:0042372: phylloquinone biosynthetic process	3.64E-05
8	GO:0032502: developmental process	5.63E-05
9	GO:0006353: DNA-templated transcription, termination	6.41E-05
10	GO:0010027: thylakoid membrane organization	8.92E-05
11	GO:0042371: vitamin K biosynthetic process	1.08E-04
12	GO:0043007: maintenance of rDNA	1.08E-04
13	GO:0006412: translation	2.10E-04
14	GO:0070981: L-asparagine biosynthetic process	2.52E-04
15	GO:0018026: peptidyl-lysine monomethylation	2.52E-04
16	GO:0006529: asparagine biosynthetic process	2.52E-04
17	GO:0006568: tryptophan metabolic process	2.52E-04
18	GO:0009658: chloroplast organization	3.13E-04
19	GO:0051604: protein maturation	4.19E-04
20	GO:0006760: folic acid-containing compound metabolic process	4.19E-04
21	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	4.19E-04
22	GO:0046739: transport of virus in multicellular host	6.01E-04
23	GO:0006168: adenine salvage	6.01E-04
24	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	6.01E-04
25	GO:0006166: purine ribonucleoside salvage	6.01E-04
26	GO:0006241: CTP biosynthetic process	6.01E-04
27	GO:0006165: nucleoside diphosphate phosphorylation	6.01E-04
28	GO:0006228: UTP biosynthetic process	6.01E-04
29	GO:0046656: folic acid biosynthetic process	7.98E-04
30	GO:0006021: inositol biosynthetic process	7.98E-04
31	GO:0006183: GTP biosynthetic process	7.98E-04
32	GO:0044206: UMP salvage	7.98E-04
33	GO:0010583: response to cyclopentenone	9.14E-04
34	GO:0045038: protein import into chloroplast thylakoid membrane	1.01E-03
35	GO:0044209: AMP salvage	1.01E-03
36	GO:0043097: pyrimidine nucleoside salvage	1.01E-03
37	GO:0042793: transcription from plastid promoter	1.23E-03
38	GO:0009117: nucleotide metabolic process	1.23E-03
39	GO:0006206: pyrimidine nucleobase metabolic process	1.23E-03
40	GO:0035435: phosphate ion transmembrane transport	1.23E-03
41	GO:0046855: inositol phosphate dephosphorylation	1.23E-03
42	GO:0046654: tetrahydrofolate biosynthetic process	1.47E-03
43	GO:0009554: megasporogenesis	1.47E-03
44	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.47E-03
45	GO:0009955: adaxial/abaxial pattern specification	1.47E-03
46	GO:1901259: chloroplast rRNA processing	1.47E-03
47	GO:0009735: response to cytokinin	1.64E-03
48	GO:0010444: guard mother cell differentiation	1.73E-03
49	GO:0009772: photosynthetic electron transport in photosystem II	1.73E-03
50	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.73E-03
51	GO:0006875: cellular metal ion homeostasis	2.00E-03
52	GO:0009690: cytokinin metabolic process	2.00E-03
53	GO:0042255: ribosome assembly	2.00E-03
54	GO:0042254: ribosome biogenesis	2.11E-03
55	GO:0009932: cell tip growth	2.28E-03
56	GO:0010497: plasmodesmata-mediated intercellular transport	2.28E-03
57	GO:0006783: heme biosynthetic process	2.57E-03
58	GO:0006535: cysteine biosynthetic process from serine	3.20E-03
59	GO:0045036: protein targeting to chloroplast	3.20E-03
60	GO:0006782: protoporphyrinogen IX biosynthetic process	3.20E-03
61	GO:0045454: cell redox homeostasis	3.40E-03
62	GO:0009073: aromatic amino acid family biosynthetic process	3.53E-03
63	GO:0018119: peptidyl-cysteine S-nitrosylation	3.53E-03
64	GO:0000038: very long-chain fatty acid metabolic process	3.53E-03
65	GO:0006415: translational termination	3.53E-03
66	GO:0006790: sulfur compound metabolic process	3.87E-03
67	GO:0045037: protein import into chloroplast stroma	3.87E-03
68	GO:0050826: response to freezing	4.23E-03
69	GO:0006541: glutamine metabolic process	4.59E-03
70	GO:0019853: L-ascorbic acid biosynthetic process	4.96E-03
71	GO:0046854: phosphatidylinositol phosphorylation	4.96E-03
72	GO:0019344: cysteine biosynthetic process	5.75E-03
73	GO:0009116: nucleoside metabolic process	5.75E-03
74	GO:0019915: lipid storage	6.56E-03
75	GO:0009411: response to UV	7.42E-03
76	GO:0006633: fatty acid biosynthetic process	7.64E-03
77	GO:0008033: tRNA processing	8.79E-03
78	GO:0042335: cuticle development	8.79E-03
79	GO:0009646: response to absence of light	9.74E-03
80	GO:0008380: RNA splicing	1.00E-02
81	GO:0009567: double fertilization forming a zygote and endosperm	1.23E-02
82	GO:0009860: pollen tube growth	1.40E-02
83	GO:0015995: chlorophyll biosynthetic process	1.56E-02
84	GO:0016311: dephosphorylation	1.62E-02
85	GO:0000160: phosphorelay signal transduction system	1.74E-02
86	GO:0009813: flavonoid biosynthetic process	1.74E-02
87	GO:0006631: fatty acid metabolic process	2.25E-02
88	GO:0042542: response to hydrogen peroxide	2.31E-02
89	GO:0008643: carbohydrate transport	2.52E-02
90	GO:0008152: metabolic process	2.64E-02
91	GO:0042538: hyperosmotic salinity response	2.80E-02
92	GO:0009736: cytokinin-activated signaling pathway	2.94E-02
93	GO:0009585: red, far-red light phototransduction	2.94E-02
94	GO:0009409: response to cold	3.28E-02
95	GO:0006096: glycolytic process	3.32E-02
96	GO:0051726: regulation of cell cycle	3.94E-02
97	GO:0009742: brassinosteroid mediated signaling pathway	3.94E-02
98	GO:0042744: hydrogen peroxide catabolic process	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0008794: arsenate reductase (glutaredoxin) activity	3.21E-06
5	GO:0019843: rRNA binding	8.51E-05
6	GO:0009374: biotin binding	1.08E-04
7	GO:0015088: copper uptake transmembrane transporter activity	1.08E-04
8	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.08E-04
9	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.08E-04
10	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.08E-04
11	GO:0004560: alpha-L-fucosidase activity	1.08E-04
12	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.08E-04
13	GO:0004071: aspartate-ammonia ligase activity	1.08E-04
14	GO:0004853: uroporphyrinogen decarboxylase activity	1.08E-04
15	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	2.52E-04
16	GO:0004150: dihydroneopterin aldolase activity	2.52E-04
17	GO:0102083: 7,8-dihydromonapterin aldolase activity	2.52E-04
18	GO:0052832: inositol monophosphate 3-phosphatase activity	2.52E-04
19	GO:0008934: inositol monophosphate 1-phosphatase activity	2.52E-04
20	GO:0052833: inositol monophosphate 4-phosphatase activity	2.52E-04
21	GO:0003735: structural constituent of ribosome	2.82E-04
22	GO:0051537: 2 iron, 2 sulfur cluster binding	2.91E-04
23	GO:0005504: fatty acid binding	4.19E-04
24	GO:0004148: dihydrolipoyl dehydrogenase activity	4.19E-04
25	GO:0035529: NADH pyrophosphatase activity	6.01E-04
26	GO:0003999: adenine phosphoribosyltransferase activity	6.01E-04
27	GO:0016149: translation release factor activity, codon specific	6.01E-04
28	GO:0004550: nucleoside diphosphate kinase activity	6.01E-04
29	GO:0008097: 5S rRNA binding	6.01E-04
30	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	6.01E-04
31	GO:0015035: protein disulfide oxidoreductase activity	6.30E-04
32	GO:0045430: chalcone isomerase activity	7.98E-04
33	GO:0004659: prenyltransferase activity	7.98E-04
34	GO:0016279: protein-lysine N-methyltransferase activity	7.98E-04
35	GO:0004845: uracil phosphoribosyltransferase activity	7.98E-04
36	GO:0004045: aminoacyl-tRNA hydrolase activity	7.98E-04
37	GO:0003989: acetyl-CoA carboxylase activity	1.01E-03
38	GO:0004040: amidase activity	1.01E-03
39	GO:0016208: AMP binding	1.23E-03
40	GO:0016462: pyrophosphatase activity	1.23E-03
41	GO:0051753: mannan synthase activity	1.47E-03
42	GO:0004849: uridine kinase activity	1.47E-03
43	GO:0004124: cysteine synthase activity	1.47E-03
44	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.47E-03
45	GO:0008312: 7S RNA binding	2.00E-03
46	GO:0003747: translation release factor activity	2.57E-03
47	GO:0005381: iron ion transmembrane transporter activity	2.88E-03
48	GO:0042803: protein homodimerization activity	3.61E-03
49	GO:0015114: phosphate ion transmembrane transporter activity	4.23E-03
50	GO:0004650: polygalacturonase activity	4.44E-03
51	GO:0009055: electron carrier activity	4.85E-03
52	GO:0051119: sugar transmembrane transporter activity	4.96E-03
53	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	5.35E-03
54	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	5.35E-03
55	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	5.35E-03
56	GO:0003727: single-stranded RNA binding	7.87E-03
57	GO:0019901: protein kinase binding	1.02E-02
58	GO:0000156: phosphorelay response regulator activity	1.18E-02
59	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.28E-02
60	GO:0016597: amino acid binding	1.34E-02
61	GO:0008236: serine-type peptidase activity	1.62E-02
62	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.68E-02
63	GO:0005525: GTP binding	1.73E-02
64	GO:0052689: carboxylic ester hydrolase activity	1.79E-02
65	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.80E-02
66	GO:0030145: manganese ion binding	1.86E-02
67	GO:0003993: acid phosphatase activity	2.05E-02
68	GO:0003924: GTPase activity	2.39E-02
69	GO:0005198: structural molecule activity	2.59E-02
70	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.66E-02
71	GO:0003690: double-stranded DNA binding	3.02E-02
72	GO:0046872: metal ion binding	3.10E-02
73	GO:0045735: nutrient reservoir activity	3.32E-02
74	GO:0016758: transferase activity, transferring hexosyl groups	4.35E-02
75	GO:0030170: pyridoxal phosphate binding	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	2.03E-17
2	GO:0009507: chloroplast	4.56E-15
3	GO:0009941: chloroplast envelope	5.46E-13
4	GO:0005840: ribosome	6.38E-06
5	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.08E-04
6	GO:0031225: anchored component of membrane	1.58E-04
7	GO:0080085: signal recognition particle, chloroplast targeting	2.52E-04
8	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.52E-04
9	GO:0009509: chromoplast	4.19E-04
10	GO:0009317: acetyl-CoA carboxylase complex	4.19E-04
11	GO:0009526: plastid envelope	7.98E-04
12	GO:0031897: Tic complex	7.98E-04
13	GO:0055035: plastid thylakoid membrane	1.01E-03
14	GO:0046658: anchored component of plasma membrane	1.70E-03
15	GO:0009536: plastid	1.83E-03
16	GO:0009505: plant-type cell wall	1.90E-03
17	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.28E-03
18	GO:0009579: thylakoid	2.47E-03
19	GO:0005763: mitochondrial small ribosomal subunit	2.57E-03
20	GO:0048046: apoplast	3.72E-03
21	GO:0009508: plastid chromosome	4.23E-03
22	GO:0031012: extracellular matrix	4.23E-03
23	GO:0009535: chloroplast thylakoid membrane	5.26E-03
24	GO:0042651: thylakoid membrane	6.15E-03
25	GO:0009534: chloroplast thylakoid	1.17E-02
26	GO:0005778: peroxisomal membrane	1.28E-02
27	GO:0009295: nucleoid	1.28E-02
28	GO:0030529: intracellular ribonucleoprotein complex	1.39E-02
29	GO:0031969: chloroplast membrane	1.62E-02
30	GO:0009707: chloroplast outer membrane	1.68E-02
31	GO:0015934: large ribosomal subunit	1.86E-02
32	GO:0005622: intracellular	1.91E-02
33	GO:0016020: membrane	3.67E-02
34	GO:0009706: chloroplast inner membrane	3.78E-02
35	GO:0005623: cell	4.52E-02