GO Enrichment Analysis of Co-expressed Genes with
AT4G12060
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 2 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 3 | GO:0006223: uracil salvage | 0.00E+00 |
| 4 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.02E-07 |
| 5 | GO:0015995: chlorophyll biosynthetic process | 3.27E-07 |
| 6 | GO:0015979: photosynthesis | 4.19E-06 |
| 7 | GO:0032544: plastid translation | 2.05E-05 |
| 8 | GO:0006783: heme biosynthetic process | 2.58E-05 |
| 9 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.18E-05 |
| 10 | GO:0032365: intracellular lipid transport | 4.45E-05 |
| 11 | GO:0080183: response to photooxidative stress | 1.10E-04 |
| 12 | GO:0006729: tetrahydrobiopterin biosynthetic process | 1.10E-04 |
| 13 | GO:0006568: tryptophan metabolic process | 1.10E-04 |
| 14 | GO:0071492: cellular response to UV-A | 1.89E-04 |
| 15 | GO:0006760: folic acid-containing compound metabolic process | 1.89E-04 |
| 16 | GO:0015714: phosphoenolpyruvate transport | 1.89E-04 |
| 17 | GO:0009735: response to cytokinin | 2.70E-04 |
| 18 | GO:0006986: response to unfolded protein | 2.78E-04 |
| 19 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 2.78E-04 |
| 20 | GO:0051085: chaperone mediated protein folding requiring cofactor | 2.78E-04 |
| 21 | GO:0006241: CTP biosynthetic process | 2.78E-04 |
| 22 | GO:0006165: nucleoside diphosphate phosphorylation | 2.78E-04 |
| 23 | GO:0006228: UTP biosynthetic process | 2.78E-04 |
| 24 | GO:0071486: cellular response to high light intensity | 3.73E-04 |
| 25 | GO:0006183: GTP biosynthetic process | 3.73E-04 |
| 26 | GO:0015713: phosphoglycerate transport | 3.73E-04 |
| 27 | GO:0044206: UMP salvage | 3.73E-04 |
| 28 | GO:0046656: folic acid biosynthetic process | 3.73E-04 |
| 29 | GO:0043097: pyrimidine nucleoside salvage | 4.75E-04 |
| 30 | GO:0009658: chloroplast organization | 4.79E-04 |
| 31 | GO:0006206: pyrimidine nucleobase metabolic process | 5.82E-04 |
| 32 | GO:0006796: phosphate-containing compound metabolic process | 5.82E-04 |
| 33 | GO:0010190: cytochrome b6f complex assembly | 5.82E-04 |
| 34 | GO:0017148: negative regulation of translation | 6.94E-04 |
| 35 | GO:0046654: tetrahydrofolate biosynthetic process | 6.94E-04 |
| 36 | GO:0048564: photosystem I assembly | 9.32E-04 |
| 37 | GO:0009657: plastid organization | 1.06E-03 |
| 38 | GO:0009245: lipid A biosynthetic process | 1.19E-03 |
| 39 | GO:0043085: positive regulation of catalytic activity | 1.61E-03 |
| 40 | GO:0006413: translational initiation | 2.46E-03 |
| 41 | GO:0009116: nucleoside metabolic process | 2.60E-03 |
| 42 | GO:0006412: translation | 2.86E-03 |
| 43 | GO:0061077: chaperone-mediated protein folding | 2.96E-03 |
| 44 | GO:0009411: response to UV | 3.33E-03 |
| 45 | GO:0042335: cuticle development | 3.93E-03 |
| 46 | GO:0006662: glycerol ether metabolic process | 4.14E-03 |
| 47 | GO:0032502: developmental process | 4.99E-03 |
| 48 | GO:0010583: response to cyclopentenone | 4.99E-03 |
| 49 | GO:0042742: defense response to bacterium | 5.05E-03 |
| 50 | GO:1901657: glycosyl compound metabolic process | 5.22E-03 |
| 51 | GO:0010286: heat acclimation | 5.68E-03 |
| 52 | GO:0045454: cell redox homeostasis | 5.99E-03 |
| 53 | GO:0009627: systemic acquired resistance | 6.64E-03 |
| 54 | GO:0034599: cellular response to oxidative stress | 8.99E-03 |
| 55 | GO:0042542: response to hydrogen peroxide | 1.01E-02 |
| 56 | GO:0009644: response to high light intensity | 1.10E-02 |
| 57 | GO:0008643: carbohydrate transport | 1.10E-02 |
| 58 | GO:0006812: cation transport | 1.22E-02 |
| 59 | GO:0042538: hyperosmotic salinity response | 1.22E-02 |
| 60 | GO:0009585: red, far-red light phototransduction | 1.28E-02 |
| 61 | GO:0009416: response to light stimulus | 1.31E-02 |
| 62 | GO:0006633: fatty acid biosynthetic process | 2.27E-02 |
| 63 | GO:0016036: cellular response to phosphate starvation | 2.31E-02 |
| 64 | GO:0048366: leaf development | 3.73E-02 |
| 65 | GO:0005975: carbohydrate metabolic process | 4.03E-02 |
| 66 | GO:0006869: lipid transport | 4.69E-02 |
| 67 | GO:0032259: methylation | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 2 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 3 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 4.45E-05 |
| 4 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 4.45E-05 |
| 5 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 4.45E-05 |
| 6 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 4.45E-05 |
| 7 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 4.45E-05 |
| 8 | GO:0004853: uroporphyrinogen decarboxylase activity | 4.45E-05 |
| 9 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 4.45E-05 |
| 10 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 1.10E-04 |
| 11 | GO:0004150: dihydroneopterin aldolase activity | 1.10E-04 |
| 12 | GO:0004550: nucleoside diphosphate kinase activity | 2.78E-04 |
| 13 | GO:0043023: ribosomal large subunit binding | 2.78E-04 |
| 14 | GO:0016851: magnesium chelatase activity | 2.78E-04 |
| 15 | GO:0015120: phosphoglycerate transmembrane transporter activity | 3.73E-04 |
| 16 | GO:0005319: lipid transporter activity | 3.73E-04 |
| 17 | GO:0004845: uracil phosphoribosyltransferase activity | 3.73E-04 |
| 18 | GO:0004040: amidase activity | 4.75E-04 |
| 19 | GO:0016462: pyrophosphatase activity | 5.82E-04 |
| 20 | GO:0031177: phosphopantetheine binding | 5.82E-04 |
| 21 | GO:0000035: acyl binding | 6.94E-04 |
| 22 | GO:0004849: uridine kinase activity | 6.94E-04 |
| 23 | GO:0004427: inorganic diphosphatase activity | 8.11E-04 |
| 24 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 9.32E-04 |
| 25 | GO:0008047: enzyme activator activity | 1.47E-03 |
| 26 | GO:0015035: protein disulfide oxidoreductase activity | 1.58E-03 |
| 27 | GO:0005543: phospholipid binding | 1.61E-03 |
| 28 | GO:0051119: sugar transmembrane transporter activity | 2.25E-03 |
| 29 | GO:0015297: antiporter activity | 2.51E-03 |
| 30 | GO:0003735: structural constituent of ribosome | 2.58E-03 |
| 31 | GO:0005528: FK506 binding | 2.60E-03 |
| 32 | GO:0051087: chaperone binding | 2.77E-03 |
| 33 | GO:0003743: translation initiation factor activity | 3.06E-03 |
| 34 | GO:0022891: substrate-specific transmembrane transporter activity | 3.33E-03 |
| 35 | GO:0047134: protein-disulfide reductase activity | 3.73E-03 |
| 36 | GO:0004791: thioredoxin-disulfide reductase activity | 4.35E-03 |
| 37 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 5.22E-03 |
| 38 | GO:0008483: transaminase activity | 5.68E-03 |
| 39 | GO:0016168: chlorophyll binding | 6.39E-03 |
| 40 | GO:0102483: scopolin beta-glucosidase activity | 6.89E-03 |
| 41 | GO:0008422: beta-glucosidase activity | 9.27E-03 |
| 42 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.10E-02 |
| 43 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.16E-02 |
| 44 | GO:0004650: polygalacturonase activity | 1.55E-02 |
| 45 | GO:0051082: unfolded protein binding | 1.65E-02 |
| 46 | GO:0019843: rRNA binding | 1.93E-02 |
| 47 | GO:0016829: lyase activity | 2.05E-02 |
| 48 | GO:0030170: pyridoxal phosphate binding | 2.08E-02 |
| 49 | GO:0005509: calcium ion binding | 2.46E-02 |
| 50 | GO:0008168: methyltransferase activity | 3.23E-02 |
| 51 | GO:0000287: magnesium ion binding | 3.27E-02 |
| 52 | GO:0003729: mRNA binding | 3.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 8.43E-32 |
| 2 | GO:0009570: chloroplast stroma | 2.76E-22 |
| 3 | GO:0009941: chloroplast envelope | 2.62E-12 |
| 4 | GO:0009579: thylakoid | 7.11E-12 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 8.25E-08 |
| 6 | GO:0009654: photosystem II oxygen evolving complex | 1.82E-06 |
| 7 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 4.45E-05 |
| 8 | GO:0005840: ribosome | 1.59E-04 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 1.75E-04 |
| 10 | GO:0010007: magnesium chelatase complex | 1.89E-04 |
| 11 | GO:0009536: plastid | 2.18E-04 |
| 12 | GO:0019898: extrinsic component of membrane | 2.57E-04 |
| 13 | GO:0031977: thylakoid lumen | 7.67E-04 |
| 14 | GO:0009539: photosystem II reaction center | 1.06E-03 |
| 15 | GO:0009508: plastid chromosome | 1.92E-03 |
| 16 | GO:0000312: plastid small ribosomal subunit | 2.09E-03 |
| 17 | GO:0030095: chloroplast photosystem II | 2.09E-03 |
| 18 | GO:0009523: photosystem II | 4.56E-03 |
| 19 | GO:0009295: nucleoid | 5.68E-03 |
| 20 | GO:0015934: large ribosomal subunit | 8.18E-03 |
| 21 | GO:0009706: chloroplast inner membrane | 1.65E-02 |
| 22 | GO:0005759: mitochondrial matrix | 2.27E-02 |
| 23 | GO:0022627: cytosolic small ribosomal subunit | 2.97E-02 |
| 24 | GO:0031969: chloroplast membrane | 3.87E-02 |