GO Enrichment Analysis of Co-expressed Genes with
AT4G09900
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 2 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 3 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 4 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 5 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 6 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 7 | GO:0015808: L-alanine transport | 3.77E-05 |
| 8 | GO:0045717: negative regulation of fatty acid biosynthetic process | 9.40E-05 |
| 9 | GO:0098712: L-glutamate import across plasma membrane | 9.40E-05 |
| 10 | GO:0010289: homogalacturonan biosynthetic process | 9.40E-05 |
| 11 | GO:0015804: neutral amino acid transport | 9.40E-05 |
| 12 | GO:0010371: regulation of gibberellin biosynthetic process | 2.40E-04 |
| 13 | GO:0007231: osmosensory signaling pathway | 2.40E-04 |
| 14 | GO:0033500: carbohydrate homeostasis | 3.24E-04 |
| 15 | GO:0031122: cytoplasmic microtubule organization | 3.24E-04 |
| 16 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 3.24E-04 |
| 17 | GO:0010021: amylopectin biosynthetic process | 3.24E-04 |
| 18 | GO:0048497: maintenance of floral organ identity | 4.13E-04 |
| 19 | GO:0016120: carotene biosynthetic process | 4.13E-04 |
| 20 | GO:0009913: epidermal cell differentiation | 5.07E-04 |
| 21 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 5.07E-04 |
| 22 | GO:0043090: amino acid import | 7.07E-04 |
| 23 | GO:0008610: lipid biosynthetic process | 8.13E-04 |
| 24 | GO:0071482: cellular response to light stimulus | 9.23E-04 |
| 25 | GO:0019538: protein metabolic process | 1.28E-03 |
| 26 | GO:0043085: positive regulation of catalytic activity | 1.40E-03 |
| 27 | GO:1903507: negative regulation of nucleic acid-templated transcription | 1.40E-03 |
| 28 | GO:0046856: phosphatidylinositol dephosphorylation | 1.40E-03 |
| 29 | GO:0006816: calcium ion transport | 1.40E-03 |
| 30 | GO:0008285: negative regulation of cell proliferation | 1.40E-03 |
| 31 | GO:0005983: starch catabolic process | 1.53E-03 |
| 32 | GO:0070588: calcium ion transmembrane transport | 1.95E-03 |
| 33 | GO:0010073: meristem maintenance | 2.40E-03 |
| 34 | GO:0008299: isoprenoid biosynthetic process | 2.40E-03 |
| 35 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 2.72E-03 |
| 36 | GO:0010227: floral organ abscission | 2.89E-03 |
| 37 | GO:0006662: glycerol ether metabolic process | 3.58E-03 |
| 38 | GO:0048825: cotyledon development | 3.94E-03 |
| 39 | GO:0019252: starch biosynthetic process | 3.94E-03 |
| 40 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.19E-03 |
| 41 | GO:0010027: thylakoid membrane organization | 5.31E-03 |
| 42 | GO:0016126: sterol biosynthetic process | 5.31E-03 |
| 43 | GO:0016051: carbohydrate biosynthetic process | 7.51E-03 |
| 44 | GO:0034599: cellular response to oxidative stress | 7.75E-03 |
| 45 | GO:0009640: photomorphogenesis | 8.96E-03 |
| 46 | GO:0031347: regulation of defense response | 1.02E-02 |
| 47 | GO:0006812: cation transport | 1.05E-02 |
| 48 | GO:0009624: response to nematode | 1.42E-02 |
| 49 | GO:0018105: peptidyl-serine phosphorylation | 1.45E-02 |
| 50 | GO:0009845: seed germination | 1.76E-02 |
| 51 | GO:0010228: vegetative to reproductive phase transition of meristem | 2.16E-02 |
| 52 | GO:0006470: protein dephosphorylation | 2.30E-02 |
| 53 | GO:0046777: protein autophosphorylation | 3.49E-02 |
| 54 | GO:0044550: secondary metabolite biosynthetic process | 3.53E-02 |
| 55 | GO:0045454: cell redox homeostasis | 3.78E-02 |
| 56 | GO:0006869: lipid transport | 4.03E-02 |
| 57 | GO:0016042: lipid catabolic process | 4.30E-02 |
| 58 | GO:0006629: lipid metabolic process | 4.39E-02 |
| 59 | GO:0008152: metabolic process | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 2 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 3 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 4 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 6.56E-06 |
| 5 | GO:0008568: microtubule-severing ATPase activity | 3.77E-05 |
| 6 | GO:0019203: carbohydrate phosphatase activity | 3.77E-05 |
| 7 | GO:0004163: diphosphomevalonate decarboxylase activity | 3.77E-05 |
| 8 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 3.77E-05 |
| 9 | GO:0005227: calcium activated cation channel activity | 3.77E-05 |
| 10 | GO:0015194: L-serine transmembrane transporter activity | 3.77E-05 |
| 11 | GO:0004451: isocitrate lyase activity | 3.77E-05 |
| 12 | GO:0050308: sugar-phosphatase activity | 3.77E-05 |
| 13 | GO:0015180: L-alanine transmembrane transporter activity | 9.40E-05 |
| 14 | GO:0033201: alpha-1,4-glucan synthase activity | 9.40E-05 |
| 15 | GO:0015193: L-proline transmembrane transporter activity | 1.63E-04 |
| 16 | GO:0070402: NADPH binding | 1.63E-04 |
| 17 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 1.63E-04 |
| 18 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 1.63E-04 |
| 19 | GO:0004373: glycogen (starch) synthase activity | 1.63E-04 |
| 20 | GO:0015186: L-glutamine transmembrane transporter activity | 2.40E-04 |
| 21 | GO:0015175: neutral amino acid transmembrane transporter activity | 2.40E-04 |
| 22 | GO:0004445: inositol-polyphosphate 5-phosphatase activity | 2.40E-04 |
| 23 | GO:0009011: starch synthase activity | 3.24E-04 |
| 24 | GO:0005313: L-glutamate transmembrane transporter activity | 3.24E-04 |
| 25 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 5.07E-04 |
| 26 | GO:2001070: starch binding | 5.07E-04 |
| 27 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 1.04E-03 |
| 28 | GO:0047617: acyl-CoA hydrolase activity | 1.15E-03 |
| 29 | GO:0008047: enzyme activator activity | 1.28E-03 |
| 30 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 1.53E-03 |
| 31 | GO:0005262: calcium channel activity | 1.67E-03 |
| 32 | GO:0003714: transcription corepressor activity | 2.25E-03 |
| 33 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 2.72E-03 |
| 34 | GO:0047134: protein-disulfide reductase activity | 3.22E-03 |
| 35 | GO:0016788: hydrolase activity, acting on ester bonds | 3.33E-03 |
| 36 | GO:0004791: thioredoxin-disulfide reductase activity | 3.76E-03 |
| 37 | GO:0016853: isomerase activity | 3.76E-03 |
| 38 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 4.51E-03 |
| 39 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 5.73E-03 |
| 40 | GO:0004721: phosphoprotein phosphatase activity | 5.94E-03 |
| 41 | GO:0004683: calmodulin-dependent protein kinase activity | 5.94E-03 |
| 42 | GO:0004672: protein kinase activity | 6.25E-03 |
| 43 | GO:0030145: manganese ion binding | 7.05E-03 |
| 44 | GO:0008289: lipid binding | 8.28E-03 |
| 45 | GO:0015293: symporter activity | 9.73E-03 |
| 46 | GO:0015171: amino acid transmembrane transporter activity | 1.19E-02 |
| 47 | GO:0003779: actin binding | 1.39E-02 |
| 48 | GO:0015035: protein disulfide oxidoreductase activity | 1.45E-02 |
| 49 | GO:0016301: kinase activity | 1.50E-02 |
| 50 | GO:0005516: calmodulin binding | 1.59E-02 |
| 51 | GO:0005509: calcium ion binding | 1.98E-02 |
| 52 | GO:0042802: identical protein binding | 2.48E-02 |
| 53 | GO:0043565: sequence-specific DNA binding | 3.03E-02 |
| 54 | GO:0052689: carboxylic ester hydrolase activity | 3.57E-02 |
| 55 | GO:0042803: protein homodimerization activity | 3.91E-02 |
| 56 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 3.99E-02 |
| 57 | GO:0005524: ATP binding | 4.09E-02 |
| 58 | GO:0016787: hydrolase activity | 4.58E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 4.55E-05 |
| 2 | GO:0009570: chloroplast stroma | 7.22E-04 |
| 3 | GO:0009501: amyloplast | 8.13E-04 |
| 4 | GO:0010287: plastoglobule | 1.48E-03 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.07E-02 |
| 6 | GO:0009534: chloroplast thylakoid | 1.28E-02 |
| 7 | GO:0005886: plasma membrane | 1.39E-02 |
| 8 | GO:0031969: chloroplast membrane | 3.32E-02 |