GO Enrichment Analysis of Co-expressed Genes with
AT4G09350
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0060416: response to growth hormone | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0032544: plastid translation | 4.85E-05 |
| 4 | GO:0071588: hydrogen peroxide mediated signaling pathway | 7.75E-05 |
| 5 | GO:0009773: photosynthetic electron transport in photosystem I | 1.04E-04 |
| 6 | GO:0010115: regulation of abscisic acid biosynthetic process | 1.85E-04 |
| 7 | GO:0080148: negative regulation of response to water deprivation | 1.85E-04 |
| 8 | GO:0015979: photosynthesis | 2.65E-04 |
| 9 | GO:0006954: inflammatory response | 3.11E-04 |
| 10 | GO:0006518: peptide metabolic process | 3.11E-04 |
| 11 | GO:2001141: regulation of RNA biosynthetic process | 4.49E-04 |
| 12 | GO:0010037: response to carbon dioxide | 5.98E-04 |
| 13 | GO:0015976: carbon utilization | 5.98E-04 |
| 14 | GO:0006749: glutathione metabolic process | 5.98E-04 |
| 15 | GO:2000122: negative regulation of stomatal complex development | 5.98E-04 |
| 16 | GO:0007623: circadian rhythm | 6.88E-04 |
| 17 | GO:0006564: L-serine biosynthetic process | 7.57E-04 |
| 18 | GO:0009247: glycolipid biosynthetic process | 7.57E-04 |
| 19 | GO:0010027: thylakoid membrane organization | 8.00E-04 |
| 20 | GO:0010190: cytochrome b6f complex assembly | 9.24E-04 |
| 21 | GO:0006561: proline biosynthetic process | 9.24E-04 |
| 22 | GO:0016554: cytidine to uridine editing | 9.24E-04 |
| 23 | GO:0018298: protein-chromophore linkage | 1.03E-03 |
| 24 | GO:0009854: oxidative photosynthetic carbon pathway | 1.10E-03 |
| 25 | GO:0010019: chloroplast-nucleus signaling pathway | 1.10E-03 |
| 26 | GO:0048527: lateral root development | 1.18E-03 |
| 27 | GO:0009645: response to low light intensity stimulus | 1.29E-03 |
| 28 | GO:0009610: response to symbiotic fungus | 1.29E-03 |
| 29 | GO:0019375: galactolipid biosynthetic process | 1.48E-03 |
| 30 | GO:0010078: maintenance of root meristem identity | 1.48E-03 |
| 31 | GO:0009704: de-etiolation | 1.48E-03 |
| 32 | GO:0009231: riboflavin biosynthetic process | 1.48E-03 |
| 33 | GO:0043562: cellular response to nitrogen levels | 1.69E-03 |
| 34 | GO:0017004: cytochrome complex assembly | 1.69E-03 |
| 35 | GO:0071482: cellular response to light stimulus | 1.69E-03 |
| 36 | GO:0009644: response to high light intensity | 1.78E-03 |
| 37 | GO:1900865: chloroplast RNA modification | 2.14E-03 |
| 38 | GO:0006857: oligopeptide transport | 2.36E-03 |
| 39 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 2.37E-03 |
| 40 | GO:0009688: abscisic acid biosynthetic process | 2.37E-03 |
| 41 | GO:0006352: DNA-templated transcription, initiation | 2.61E-03 |
| 42 | GO:0009750: response to fructose | 2.61E-03 |
| 43 | GO:0009684: indoleacetic acid biosynthetic process | 2.61E-03 |
| 44 | GO:0006412: translation | 3.07E-03 |
| 45 | GO:0010628: positive regulation of gene expression | 3.12E-03 |
| 46 | GO:0010588: cotyledon vascular tissue pattern formation | 3.12E-03 |
| 47 | GO:0048467: gynoecium development | 3.38E-03 |
| 48 | GO:0010207: photosystem II assembly | 3.38E-03 |
| 49 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.94E-03 |
| 50 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.52E-03 |
| 51 | GO:0016226: iron-sulfur cluster assembly | 5.13E-03 |
| 52 | GO:0009561: megagametogenesis | 5.77E-03 |
| 53 | GO:0080022: primary root development | 6.44E-03 |
| 54 | GO:0010087: phloem or xylem histogenesis | 6.44E-03 |
| 55 | GO:0010182: sugar mediated signaling pathway | 6.78E-03 |
| 56 | GO:0009958: positive gravitropism | 6.78E-03 |
| 57 | GO:0048825: cotyledon development | 7.49E-03 |
| 58 | GO:0009851: auxin biosynthetic process | 7.49E-03 |
| 59 | GO:0000302: response to reactive oxygen species | 7.85E-03 |
| 60 | GO:0009658: chloroplast organization | 8.30E-03 |
| 61 | GO:0009723: response to ethylene | 9.61E-03 |
| 62 | GO:0042128: nitrate assimilation | 1.10E-02 |
| 63 | GO:0000160: phosphorelay signal transduction system | 1.27E-02 |
| 64 | GO:0009407: toxin catabolic process | 1.31E-02 |
| 65 | GO:0009631: cold acclimation | 1.36E-02 |
| 66 | GO:0010119: regulation of stomatal movement | 1.36E-02 |
| 67 | GO:0009637: response to blue light | 1.45E-02 |
| 68 | GO:0009853: photorespiration | 1.45E-02 |
| 69 | GO:0034599: cellular response to oxidative stress | 1.49E-02 |
| 70 | GO:0010114: response to red light | 1.73E-02 |
| 71 | GO:0051707: response to other organism | 1.73E-02 |
| 72 | GO:0009409: response to cold | 1.87E-02 |
| 73 | GO:0009636: response to toxic substance | 1.88E-02 |
| 74 | GO:0009736: cytokinin-activated signaling pathway | 2.14E-02 |
| 75 | GO:0048367: shoot system development | 2.47E-02 |
| 76 | GO:0042744: hydrogen peroxide catabolic process | 3.54E-02 |
| 77 | GO:0009790: embryo development | 3.61E-02 |
| 78 | GO:0006633: fatty acid biosynthetic process | 3.80E-02 |
| 79 | GO:0040008: regulation of growth | 3.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 3 | GO:0005528: FK506 binding | 5.38E-06 |
| 4 | GO:0019843: rRNA binding | 3.66E-05 |
| 5 | GO:0004328: formamidase activity | 7.75E-05 |
| 6 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.75E-04 |
| 7 | GO:0042389: omega-3 fatty acid desaturase activity | 1.85E-04 |
| 8 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 1.85E-04 |
| 9 | GO:0004617: phosphoglycerate dehydrogenase activity | 1.85E-04 |
| 10 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 1.85E-04 |
| 11 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 1.85E-04 |
| 12 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 1.85E-04 |
| 13 | GO:0003935: GTP cyclohydrolase II activity | 3.11E-04 |
| 14 | GO:0035250: UDP-galactosyltransferase activity | 4.49E-04 |
| 15 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 4.49E-04 |
| 16 | GO:0001053: plastid sigma factor activity | 5.98E-04 |
| 17 | GO:0016987: sigma factor activity | 5.98E-04 |
| 18 | GO:0016846: carbon-sulfur lyase activity | 7.57E-04 |
| 19 | GO:0016168: chlorophyll binding | 8.43E-04 |
| 20 | GO:0016688: L-ascorbate peroxidase activity | 9.24E-04 |
| 21 | GO:0004130: cytochrome-c peroxidase activity | 9.24E-04 |
| 22 | GO:0035673: oligopeptide transmembrane transporter activity | 9.24E-04 |
| 23 | GO:0004222: metalloendopeptidase activity | 1.13E-03 |
| 24 | GO:0004033: aldo-keto reductase (NADP) activity | 1.48E-03 |
| 25 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 1.69E-03 |
| 26 | GO:0003735: structural constituent of ribosome | 1.93E-03 |
| 27 | GO:0008794: arsenate reductase (glutaredoxin) activity | 2.61E-03 |
| 28 | GO:0015198: oligopeptide transporter activity | 2.86E-03 |
| 29 | GO:0004022: alcohol dehydrogenase (NAD) activity | 3.12E-03 |
| 30 | GO:0004089: carbonate dehydratase activity | 3.12E-03 |
| 31 | GO:0031072: heat shock protein binding | 3.12E-03 |
| 32 | GO:0031409: pigment binding | 3.94E-03 |
| 33 | GO:0051536: iron-sulfur cluster binding | 4.23E-03 |
| 34 | GO:0022891: substrate-specific transmembrane transporter activity | 5.45E-03 |
| 35 | GO:0000156: phosphorelay response regulator activity | 8.59E-03 |
| 36 | GO:0043531: ADP binding | 9.10E-03 |
| 37 | GO:0016597: amino acid binding | 9.75E-03 |
| 38 | GO:0004364: glutathione transferase activity | 1.68E-02 |
| 39 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.83E-02 |
| 40 | GO:0015293: symporter activity | 1.88E-02 |
| 41 | GO:0051287: NAD binding | 1.98E-02 |
| 42 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.14E-02 |
| 43 | GO:0051082: unfolded protein binding | 2.75E-02 |
| 44 | GO:0015035: protein disulfide oxidoreductase activity | 2.81E-02 |
| 45 | GO:0015144: carbohydrate transmembrane transporter activity | 3.67E-02 |
| 46 | GO:0005351: sugar:proton symporter activity | 3.99E-02 |
| 47 | GO:0008194: UDP-glycosyltransferase activity | 4.40E-02 |
| 48 | GO:0003743: translation initiation factor activity | 4.53E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 4.76E-24 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.96E-13 |
| 3 | GO:0009534: chloroplast thylakoid | 3.23E-10 |
| 4 | GO:0009941: chloroplast envelope | 4.52E-10 |
| 5 | GO:0009570: chloroplast stroma | 3.76E-08 |
| 6 | GO:0009706: chloroplast inner membrane | 2.35E-05 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 3.66E-05 |
| 8 | GO:0009782: photosystem I antenna complex | 7.75E-05 |
| 9 | GO:0005840: ribosome | 1.12E-04 |
| 10 | GO:0031977: thylakoid lumen | 1.25E-04 |
| 11 | GO:0042170: plastid membrane | 1.85E-04 |
| 12 | GO:0009579: thylakoid | 2.20E-04 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.91E-03 |
| 14 | GO:0030076: light-harvesting complex | 3.66E-03 |
| 15 | GO:0009536: plastid | 3.77E-03 |
| 16 | GO:0009654: photosystem II oxygen evolving complex | 4.52E-03 |
| 17 | GO:0015935: small ribosomal subunit | 4.82E-03 |
| 18 | GO:0009522: photosystem I | 7.13E-03 |
| 19 | GO:0009523: photosystem II | 7.49E-03 |
| 20 | GO:0019898: extrinsic component of membrane | 7.49E-03 |
| 21 | GO:0015934: large ribosomal subunit | 1.36E-02 |
| 22 | GO:0016020: membrane | 2.52E-02 |
| 23 | GO:0016021: integral component of membrane | 2.58E-02 |
| 24 | GO:0010287: plastoglobule | 3.11E-02 |
| 25 | GO:0046658: anchored component of plasma membrane | 4.95E-02 |