co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G07390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
2	GO:0072722: response to amitrole	0.00E+00
3	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
4	GO:0046686: response to cadmium ion	2.19E-09
5	GO:0006099: tricarboxylic acid cycle	8.42E-08
6	GO:0042742: defense response to bacterium	1.89E-06
7	GO:0006102: isocitrate metabolic process	2.78E-06
8	GO:0009617: response to bacterium	1.09E-05
9	GO:0006979: response to oxidative stress	1.52E-05
10	GO:0006457: protein folding	2.19E-05
11	GO:0009627: systemic acquired resistance	2.22E-05
12	GO:0034976: response to endoplasmic reticulum stress	3.74E-05
13	GO:0009697: salicylic acid biosynthetic process	4.65E-05
14	GO:0045454: cell redox homeostasis	6.29E-05
15	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	9.52E-05
16	GO:0009751: response to salicylic acid	1.02E-04
17	GO:0015031: protein transport	1.80E-04
18	GO:0055114: oxidation-reduction process	1.86E-04
19	GO:0050691: regulation of defense response to virus by host	1.98E-04
20	GO:0019276: UDP-N-acetylgalactosamine metabolic process	1.98E-04
21	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.98E-04
22	GO:0051938: L-glutamate import	1.98E-04
23	GO:0006047: UDP-N-acetylglucosamine metabolic process	1.98E-04
24	GO:1990641: response to iron ion starvation	1.98E-04
25	GO:0043687: post-translational protein modification	1.98E-04
26	GO:0051775: response to redox state	1.98E-04
27	GO:0042964: thioredoxin reduction	1.98E-04
28	GO:0046244: salicylic acid catabolic process	1.98E-04
29	GO:0010204: defense response signaling pathway, resistance gene-independent	2.01E-04
30	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	4.43E-04
31	GO:0043091: L-arginine import	4.43E-04
32	GO:0031204: posttranslational protein targeting to membrane, translocation	4.43E-04
33	GO:0015802: basic amino acid transport	4.43E-04
34	GO:0009866: induced systemic resistance, ethylene mediated signaling pathway	4.43E-04
35	GO:0006101: citrate metabolic process	4.43E-04
36	GO:0006011: UDP-glucose metabolic process	7.22E-04
37	GO:0010272: response to silver ion	7.22E-04
38	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	7.22E-04
39	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	7.22E-04
40	GO:0055074: calcium ion homeostasis	7.22E-04
41	GO:0009062: fatty acid catabolic process	7.22E-04
42	GO:0003333: amino acid transmembrane transport	9.64E-04
43	GO:0016998: cell wall macromolecule catabolic process	9.64E-04
44	GO:0009846: pollen germination	1.01E-03
45	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.03E-03
46	GO:0002239: response to oomycetes	1.03E-03
47	GO:0072334: UDP-galactose transmembrane transport	1.03E-03
48	GO:0033014: tetrapyrrole biosynthetic process	1.03E-03
49	GO:0031348: negative regulation of defense response	1.05E-03
50	GO:0009306: protein secretion	1.24E-03
51	GO:0009553: embryo sac development	1.65E-03
52	GO:0018279: protein N-linked glycosylation via asparagine	1.74E-03
53	GO:0046283: anthocyanin-containing compound metabolic process	1.74E-03
54	GO:0006097: glyoxylate cycle	1.74E-03
55	GO:0045116: protein neddylation	1.74E-03
56	GO:0018344: protein geranylgeranylation	1.74E-03
57	GO:0000304: response to singlet oxygen	1.74E-03
58	GO:0000302: response to reactive oxygen species	1.92E-03
59	GO:0010193: response to ozone	1.92E-03
60	GO:0009651: response to salt stress	2.01E-03
61	GO:0010256: endomembrane system organization	2.14E-03
62	GO:0047484: regulation of response to osmotic stress	2.14E-03
63	GO:0030163: protein catabolic process	2.18E-03
64	GO:0010252: auxin homeostasis	2.32E-03
65	GO:0042372: phylloquinone biosynthetic process	2.57E-03
66	GO:0032259: methylation	2.65E-03
67	GO:1902074: response to salt	3.03E-03
68	GO:0016311: dephosphorylation	3.41E-03
69	GO:0006605: protein targeting	3.51E-03
70	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.51E-03
71	GO:0030091: protein repair	3.51E-03
72	GO:0006875: cellular metal ion homeostasis	3.51E-03
73	GO:0009817: defense response to fungus, incompatible interaction	3.59E-03
74	GO:0030968: endoplasmic reticulum unfolded protein response	4.02E-03
75	GO:0009699: phenylpropanoid biosynthetic process	4.02E-03
76	GO:0019430: removal of superoxide radicals	4.02E-03
77	GO:0006783: heme biosynthetic process	4.54E-03
78	GO:0046685: response to arsenic-containing substance	4.54E-03
79	GO:0030042: actin filament depolymerization	5.10E-03
80	GO:0042542: response to hydrogen peroxide	5.62E-03
81	GO:0006032: chitin catabolic process	5.67E-03
82	GO:0009688: abscisic acid biosynthetic process	5.67E-03
83	GO:0007064: mitotic sister chromatid cohesion	5.67E-03
84	GO:0009870: defense response signaling pathway, resistance gene-dependent	5.67E-03
85	GO:0006468: protein phosphorylation	5.69E-03
86	GO:0000272: polysaccharide catabolic process	6.27E-03
87	GO:0009682: induced systemic resistance	6.27E-03
88	GO:0006790: sulfur compound metabolic process	6.89E-03
89	GO:0002213: defense response to insect	6.89E-03
90	GO:0010075: regulation of meristem growth	7.52E-03
91	GO:0006094: gluconeogenesis	7.52E-03
92	GO:0006486: protein glycosylation	7.88E-03
93	GO:0051603: proteolysis involved in cellular protein catabolic process	8.16E-03
94	GO:0009934: regulation of meristem structural organization	8.19E-03
95	GO:0002237: response to molecule of bacterial origin	8.19E-03
96	GO:0046854: phosphatidylinositol phosphorylation	8.87E-03
97	GO:0046688: response to copper ion	8.87E-03
98	GO:0006096: glycolytic process	9.33E-03
99	GO:0048316: seed development	9.63E-03
100	GO:0009626: plant-type hypersensitive response	9.94E-03
101	GO:0009620: response to fungus	1.03E-02
102	GO:0006886: intracellular protein transport	1.03E-02
103	GO:0080147: root hair cell development	1.03E-02
104	GO:0006511: ubiquitin-dependent protein catabolic process	1.07E-02
105	GO:0006825: copper ion transport	1.10E-02
106	GO:0015992: proton transport	1.18E-02
107	GO:0071456: cellular response to hypoxia	1.26E-02
108	GO:0019748: secondary metabolic process	1.26E-02
109	GO:0007131: reciprocal meiotic recombination	1.26E-02
110	GO:0010227: floral organ abscission	1.34E-02
111	GO:0010584: pollen exine formation	1.42E-02
112	GO:0008033: tRNA processing	1.59E-02
113	GO:0000413: protein peptidyl-prolyl isomerization	1.59E-02
114	GO:0010118: stomatal movement	1.59E-02
115	GO:0048868: pollen tube development	1.67E-02
116	GO:0010154: fruit development	1.67E-02
117	GO:0009851: auxin biosynthetic process	1.85E-02
118	GO:0006635: fatty acid beta-oxidation	1.94E-02
119	GO:0002229: defense response to oomycetes	1.94E-02
120	GO:0010150: leaf senescence	1.95E-02
121	GO:0007264: small GTPase mediated signal transduction	2.04E-02
122	GO:0009567: double fertilization forming a zygote and endosperm	2.23E-02
123	GO:0009735: response to cytokinin	2.38E-02
124	GO:0009615: response to virus	2.53E-02
125	GO:0009555: pollen development	2.66E-02
126	GO:0015995: chlorophyll biosynthetic process	2.84E-02
127	GO:0016049: cell growth	2.94E-02
128	GO:0009407: toxin catabolic process	3.27E-02
129	GO:0007568: aging	3.38E-02
130	GO:0006865: amino acid transport	3.50E-02
131	GO:0016051: carbohydrate biosynthetic process	3.61E-02
132	GO:0045087: innate immune response	3.61E-02
133	GO:0050832: defense response to fungus	3.62E-02
134	GO:0009744: response to sucrose	4.32E-02
135	GO:0051707: response to other organism	4.32E-02
136	GO:0042546: cell wall biogenesis	4.45E-02
137	GO:0009636: response to toxic substance	4.70E-02
138	GO:0009965: leaf morphogenesis	4.70E-02
139	GO:0006855: drug transmembrane transport	4.82E-02
140	GO:0031347: regulation of defense response	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
2	GO:0004164: diphthine synthase activity	0.00E+00
3	GO:0050220: prostaglandin-E synthase activity	0.00E+00
4	GO:0003980: UDP-glucose:glycoprotein glucosyltransferase activity	0.00E+00
5	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
6	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
7	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.57E-05
8	GO:0004298: threonine-type endopeptidase activity	6.01E-05
9	GO:0009055: electron carrier activity	1.24E-04
10	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.98E-04
11	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	1.98E-04
12	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.98E-04
13	GO:0008809: carnitine racemase activity	1.98E-04
14	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	1.98E-04
15	GO:0004325: ferrochelatase activity	1.98E-04
16	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	1.98E-04
17	GO:0048037: cofactor binding	1.98E-04
18	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	1.98E-04
19	GO:0008909: isochorismate synthase activity	1.98E-04
20	GO:0051082: unfolded protein binding	2.46E-04
21	GO:0050660: flavin adenine dinucleotide binding	2.58E-04
22	GO:0005509: calcium ion binding	3.43E-04
23	GO:0004776: succinate-CoA ligase (GDP-forming) activity	4.43E-04
24	GO:0019781: NEDD8 activating enzyme activity	4.43E-04
25	GO:0003994: aconitate hydratase activity	4.43E-04
26	GO:0004775: succinate-CoA ligase (ADP-forming) activity	4.43E-04
27	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.93E-04
28	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	7.22E-04
29	GO:0000030: mannosyltransferase activity	7.22E-04
30	GO:0005093: Rab GDP-dissociation inhibitor activity	7.22E-04
31	GO:0016531: copper chaperone activity	7.22E-04
32	GO:0004148: dihydrolipoyl dehydrogenase activity	7.22E-04
33	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	7.22E-04
34	GO:0005460: UDP-glucose transmembrane transporter activity	1.03E-03
35	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.03E-03
36	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.03E-03
37	GO:0015189: L-lysine transmembrane transporter activity	1.03E-03
38	GO:0015181: arginine transmembrane transporter activity	1.03E-03
39	GO:0003756: protein disulfide isomerase activity	1.24E-03
40	GO:0004576: oligosaccharyl transferase activity	1.37E-03
41	GO:0010279: indole-3-acetic acid amido synthetase activity	1.37E-03
42	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.37E-03
43	GO:0005313: L-glutamate transmembrane transporter activity	1.37E-03
44	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.37E-03
45	GO:0004031: aldehyde oxidase activity	1.37E-03
46	GO:0050302: indole-3-acetaldehyde oxidase activity	1.37E-03
47	GO:0008233: peptidase activity	1.52E-03
48	GO:0005459: UDP-galactose transmembrane transporter activity	1.74E-03
49	GO:0008641: small protein activating enzyme activity	1.74E-03
50	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.74E-03
51	GO:0017137: Rab GTPase binding	1.74E-03
52	GO:0004674: protein serine/threonine kinase activity	1.80E-03
53	GO:0030976: thiamine pyrophosphate binding	2.14E-03
54	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.14E-03
55	GO:0004656: procollagen-proline 4-dioxygenase activity	2.57E-03
56	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.57E-03
57	GO:0051920: peroxiredoxin activity	2.57E-03
58	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.57E-03
59	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.57E-03
60	GO:0008320: protein transmembrane transporter activity	3.03E-03
61	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.03E-03
62	GO:0005507: copper ion binding	3.04E-03
63	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.41E-03
64	GO:0016209: antioxidant activity	3.51E-03
65	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.59E-03
66	GO:0008135: translation factor activity, RNA binding	4.02E-03
67	GO:0050897: cobalt ion binding	4.15E-03
68	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.54E-03
69	GO:0030955: potassium ion binding	5.10E-03
70	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.10E-03
71	GO:0004743: pyruvate kinase activity	5.10E-03
72	GO:0015174: basic amino acid transmembrane transporter activity	5.10E-03
73	GO:0050661: NADP binding	5.17E-03
74	GO:0051539: 4 iron, 4 sulfur cluster binding	5.17E-03
75	GO:0004568: chitinase activity	5.67E-03
76	GO:0008171: O-methyltransferase activity	5.67E-03
77	GO:0008168: methyltransferase activity	5.69E-03
78	GO:0004129: cytochrome-c oxidase activity	6.27E-03
79	GO:0051537: 2 iron, 2 sulfur cluster binding	6.33E-03
80	GO:0051287: NAD binding	7.08E-03
81	GO:0004022: alcohol dehydrogenase (NAD) activity	7.52E-03
82	GO:0015171: amino acid transmembrane transporter activity	8.73E-03
83	GO:0004190: aspartic-type endopeptidase activity	8.87E-03
84	GO:0008061: chitin binding	8.87E-03
85	GO:0051536: iron-sulfur cluster binding	1.03E-02
86	GO:0031418: L-ascorbic acid binding	1.03E-02
87	GO:0015035: protein disulfide oxidoreductase activity	1.16E-02
88	GO:0016779: nucleotidyltransferase activity	1.26E-02
89	GO:0016758: transferase activity, transferring hexosyl groups	1.37E-02
90	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.42E-02
91	GO:0005525: GTP binding	1.43E-02
92	GO:0016829: lyase activity	1.53E-02
93	GO:0008565: protein transporter activity	1.69E-02
94	GO:0016301: kinase activity	1.76E-02
95	GO:0004791: thioredoxin-disulfide reductase activity	1.76E-02
96	GO:0016853: isomerase activity	1.76E-02
97	GO:0010181: FMN binding	1.76E-02
98	GO:0008237: metallopeptidase activity	2.33E-02
99	GO:0051213: dioxygenase activity	2.53E-02
100	GO:0000166: nucleotide binding	2.66E-02
101	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.73E-02
102	GO:0004683: calmodulin-dependent protein kinase activity	2.84E-02
103	GO:0030247: polysaccharide binding	2.84E-02
104	GO:0016491: oxidoreductase activity	2.94E-02
105	GO:0000287: magnesium ion binding	2.96E-02
106	GO:0005096: GTPase activator activity	3.16E-02
107	GO:0015238: drug transmembrane transporter activity	3.16E-02
108	GO:0030145: manganese ion binding	3.38E-02
109	GO:0046872: metal ion binding	3.38E-02
110	GO:0003746: translation elongation factor activity	3.61E-02
111	GO:0003993: acid phosphatase activity	3.73E-02
112	GO:0004364: glutathione transferase activity	4.20E-02
113	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
2	GO:0005784: Sec61 translocon complex	0.00E+00
3	GO:0005783: endoplasmic reticulum	2.58E-10
4	GO:0005788: endoplasmic reticulum lumen	3.35E-10
5	GO:0005829: cytosol	1.83E-05
6	GO:0005839: proteasome core complex	6.01E-05
7	GO:0000502: proteasome complex	1.34E-04
8	GO:0045252: oxoglutarate dehydrogenase complex	1.98E-04
9	GO:0030134: ER to Golgi transport vesicle	4.43E-04
10	GO:0005886: plasma membrane	4.51E-04
11	GO:0048046: apoplast	8.26E-04
12	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.03E-03
13	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.37E-03
14	GO:0005739: mitochondrion	1.37E-03
15	GO:0030660: Golgi-associated vesicle membrane	1.37E-03
16	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.37E-03
17	GO:0005746: mitochondrial respiratory chain	1.74E-03
18	GO:0008250: oligosaccharyltransferase complex	1.74E-03
19	GO:0032588: trans-Golgi network membrane	2.14E-03
20	GO:0005774: vacuolar membrane	2.16E-03
21	GO:0030173: integral component of Golgi membrane	2.57E-03
22	GO:0005759: mitochondrial matrix	3.05E-03
23	GO:0045273: respiratory chain complex II	3.51E-03
24	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	3.51E-03
25	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.51E-03
26	GO:0019773: proteasome core complex, alpha-subunit complex	4.02E-03
27	GO:0031901: early endosome membrane	4.54E-03
28	GO:0005740: mitochondrial envelope	5.67E-03
29	GO:0005765: lysosomal membrane	6.27E-03
30	GO:0008541: proteasome regulatory particle, lid subcomplex	6.27E-03
31	GO:0005750: mitochondrial respiratory chain complex III	8.19E-03
32	GO:0030176: integral component of endoplasmic reticulum membrane	8.87E-03
33	GO:0005758: mitochondrial intermembrane space	1.03E-02
34	GO:0009507: chloroplast	1.23E-02
35	GO:0015629: actin cytoskeleton	1.34E-02
36	GO:0016592: mediator complex	2.04E-02
37	GO:0032580: Golgi cisterna membrane	2.23E-02
38	GO:0009536: plastid	2.65E-02
39	GO:0016020: membrane	2.85E-02
40	GO:0005576: extracellular region	3.05E-02
41	GO:0000325: plant-type vacuole	3.38E-02
42	GO:0005789: endoplasmic reticulum membrane	3.65E-02
43	GO:0031969: chloroplast membrane	3.74E-02
44	GO:0016021: integral component of membrane	4.25E-02