Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G04960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000303: response to superoxide5.43E-06
2GO:0080173: male-female gamete recognition during double fertilization5.43E-06
3GO:0031648: protein destabilization1.49E-05
4GO:0019521: D-gluconate metabolic process1.49E-05
5GO:0034051: negative regulation of plant-type hypersensitive response2.75E-05
6GO:0006809: nitric oxide biosynthetic process4.27E-05
7GO:0006955: immune response1.46E-04
8GO:0006102: isocitrate metabolic process1.70E-04
9GO:0006098: pentose-phosphate shunt2.22E-04
10GO:0012501: programmed cell death3.35E-04
11GO:0010102: lateral root morphogenesis3.65E-04
12GO:0009723: response to ethylene3.80E-04
13GO:2000377: regulation of reactive oxygen species metabolic process4.90E-04
14GO:0030433: ubiquitin-dependent ERAD pathway5.89E-04
15GO:0031348: negative regulation of defense response5.89E-04
16GO:0010193: response to ozone8.75E-04
17GO:0010583: response to cyclopentenone9.12E-04
18GO:0016032: viral process9.12E-04
19GO:0006464: cellular protein modification process9.89E-04
20GO:0009816: defense response to bacterium, incompatible interaction1.15E-03
21GO:0006950: response to stress1.23E-03
22GO:0007568: aging1.44E-03
23GO:0009867: jasmonic acid mediated signaling pathway1.53E-03
24GO:0006099: tricarboxylic acid cycle1.58E-03
25GO:0006979: response to oxidative stress2.03E-03
26GO:0009846: pollen germination2.11E-03
27GO:0042538: hyperosmotic salinity response2.11E-03
28GO:0051603: proteolysis involved in cellular protein catabolic process2.27E-03
29GO:0006417: regulation of translation2.37E-03
30GO:0015031: protein transport2.55E-03
31GO:0046686: response to cadmium ion3.11E-03
32GO:0009790: embryo development3.63E-03
33GO:0006413: translational initiation3.87E-03
34GO:0006970: response to osmotic stress5.77E-03
35GO:0009860: pollen tube growth5.77E-03
36GO:0007049: cell cycle5.91E-03
37GO:0009651: response to salt stress6.65E-03
38GO:0009873: ethylene-activated signaling pathway9.96E-03
39GO:0009734: auxin-activated signaling pathway1.06E-02
40GO:0051301: cell division1.33E-02
41GO:0009414: response to water deprivation2.02E-02
42GO:0009733: response to auxin2.24E-02
43GO:0016310: phosphorylation3.91E-02
44GO:0016567: protein ubiquitination4.56E-02
45GO:0006508: proteolysis4.59E-02
RankGO TermAdjusted P value
1GO:0004450: isocitrate dehydrogenase (NADP+) activity1.49E-05
2GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity1.22E-04
3GO:0008113: peptide-methionine (S)-S-oxide reductase activity1.22E-04
4GO:0003950: NAD+ ADP-ribosyltransferase activity1.22E-04
5GO:0045309: protein phosphorylated amino acid binding2.49E-04
6GO:0019904: protein domain specific binding3.06E-04
7GO:0004197: cysteine-type endopeptidase activity9.12E-04
8GO:0005515: protein binding1.20E-03
9GO:0051287: NAD binding2.06E-03
10GO:0008234: cysteine-type peptidase activity2.37E-03
11GO:0016787: hydrolase activity4.26E-03
12GO:0003743: translation initiation factor activity4.52E-03
13GO:0042802: identical protein binding4.79E-03
14GO:0000287: magnesium ion binding5.41E-03
15GO:0003924: GTPase activity8.33E-03
16GO:0016887: ATPase activity1.13E-02
17GO:0005525: GTP binding1.78E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0030139: endocytic vesicle2.75E-05
3GO:0032585: multivesicular body membrane4.27E-05
4GO:0005635: nuclear envelope8.59E-05
5GO:0016363: nuclear matrix1.22E-04
6GO:0031901: early endosome membrane2.22E-04
7GO:0005829: cytosol3.30E-04
8GO:0005764: lysosome3.96E-04
9GO:0005769: early endosome4.58E-04
10GO:0005777: peroxisome1.16E-03
11GO:0005819: spindle1.63E-03
12GO:0005783: endoplasmic reticulum2.10E-03
13GO:0009524: phragmoplast3.38E-03
14GO:0005615: extracellular space4.39E-03
15GO:0005618: cell wall7.86E-03
16GO:0022626: cytosolic ribosome1.21E-02
17GO:0005737: cytoplasm1.25E-02
18GO:0009570: chloroplast stroma1.30E-02
19GO:0005768: endosome1.91E-02
20GO:0005886: plasma membrane2.53E-02
21GO:0005789: endoplasmic reticulum membrane2.79E-02
22GO:0005730: nucleolus3.00E-02
23GO:0005794: Golgi apparatus3.58E-02
24GO:0005774: vacuolar membrane5.00E-02
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Gene type



Gene DE type