GO Enrichment Analysis of Co-expressed Genes with
AT4G04640
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 2 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 3 | GO:0015979: photosynthesis | 5.32E-21 |
| 4 | GO:0015995: chlorophyll biosynthetic process | 1.77E-09 |
| 5 | GO:0010196: nonphotochemical quenching | 1.79E-09 |
| 6 | GO:0009773: photosynthetic electron transport in photosystem I | 2.96E-08 |
| 7 | GO:0010027: thylakoid membrane organization | 6.54E-08 |
| 8 | GO:0010207: photosystem II assembly | 7.69E-08 |
| 9 | GO:0009409: response to cold | 1.70E-07 |
| 10 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 6.25E-07 |
| 11 | GO:0006000: fructose metabolic process | 2.36E-06 |
| 12 | GO:0090391: granum assembly | 2.36E-06 |
| 13 | GO:0009735: response to cytokinin | 4.28E-06 |
| 14 | GO:0042742: defense response to bacterium | 5.89E-06 |
| 15 | GO:0019253: reductive pentose-phosphate cycle | 6.71E-06 |
| 16 | GO:0010037: response to carbon dioxide | 1.06E-05 |
| 17 | GO:0015976: carbon utilization | 1.06E-05 |
| 18 | GO:2000122: negative regulation of stomatal complex development | 1.06E-05 |
| 19 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.42E-05 |
| 20 | GO:0042549: photosystem II stabilization | 2.64E-05 |
| 21 | GO:0006002: fructose 6-phosphate metabolic process | 8.31E-05 |
| 22 | GO:0010206: photosystem II repair | 1.03E-04 |
| 23 | GO:0043489: RNA stabilization | 1.10E-04 |
| 24 | GO:1902458: positive regulation of stomatal opening | 1.10E-04 |
| 25 | GO:0034337: RNA folding | 1.10E-04 |
| 26 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.10E-04 |
| 27 | GO:0046467: membrane lipid biosynthetic process | 1.10E-04 |
| 28 | GO:0018298: protein-chromophore linkage | 1.36E-04 |
| 29 | GO:0006094: gluconeogenesis | 2.30E-04 |
| 30 | GO:0005986: sucrose biosynthetic process | 2.30E-04 |
| 31 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.57E-04 |
| 32 | GO:1900871: chloroplast mRNA modification | 2.57E-04 |
| 33 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.29E-04 |
| 34 | GO:0045493: xylan catabolic process | 4.25E-04 |
| 35 | GO:0006518: peptide metabolic process | 4.25E-04 |
| 36 | GO:0051513: regulation of monopolar cell growth | 6.10E-04 |
| 37 | GO:0071484: cellular response to light intensity | 6.10E-04 |
| 38 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 6.10E-04 |
| 39 | GO:0055114: oxidation-reduction process | 6.56E-04 |
| 40 | GO:0000413: protein peptidyl-prolyl isomerization | 6.67E-04 |
| 41 | GO:0019464: glycine decarboxylation via glycine cleavage system | 8.10E-04 |
| 42 | GO:0009765: photosynthesis, light harvesting | 8.10E-04 |
| 43 | GO:0006546: glycine catabolic process | 8.10E-04 |
| 44 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.02E-03 |
| 45 | GO:0031365: N-terminal protein amino acid modification | 1.02E-03 |
| 46 | GO:0034052: positive regulation of plant-type hypersensitive response | 1.02E-03 |
| 47 | GO:0010189: vitamin E biosynthetic process | 1.49E-03 |
| 48 | GO:0010019: chloroplast-nucleus signaling pathway | 1.49E-03 |
| 49 | GO:0010555: response to mannitol | 1.49E-03 |
| 50 | GO:1901259: chloroplast rRNA processing | 1.49E-03 |
| 51 | GO:0009817: defense response to fungus, incompatible interaction | 1.61E-03 |
| 52 | GO:0009645: response to low light intensity stimulus | 1.75E-03 |
| 53 | GO:0009772: photosynthetic electron transport in photosystem II | 1.75E-03 |
| 54 | GO:0009769: photosynthesis, light harvesting in photosystem II | 1.75E-03 |
| 55 | GO:0010218: response to far red light | 1.78E-03 |
| 56 | GO:0009631: cold acclimation | 1.86E-03 |
| 57 | GO:0010119: regulation of stomatal movement | 1.86E-03 |
| 58 | GO:0043068: positive regulation of programmed cell death | 2.03E-03 |
| 59 | GO:2000070: regulation of response to water deprivation | 2.03E-03 |
| 60 | GO:0048564: photosystem I assembly | 2.03E-03 |
| 61 | GO:0009642: response to light intensity | 2.03E-03 |
| 62 | GO:0009637: response to blue light | 2.04E-03 |
| 63 | GO:0034599: cellular response to oxidative stress | 2.13E-03 |
| 64 | GO:0009658: chloroplast organization | 2.13E-03 |
| 65 | GO:0015996: chlorophyll catabolic process | 2.32E-03 |
| 66 | GO:0007186: G-protein coupled receptor signaling pathway | 2.32E-03 |
| 67 | GO:0010114: response to red light | 2.61E-03 |
| 68 | GO:0006783: heme biosynthetic process | 2.62E-03 |
| 69 | GO:0010205: photoinhibition | 2.93E-03 |
| 70 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.25E-03 |
| 71 | GO:0045454: cell redox homeostasis | 3.51E-03 |
| 72 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.59E-03 |
| 73 | GO:0019684: photosynthesis, light reaction | 3.59E-03 |
| 74 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.59E-03 |
| 75 | GO:0045037: protein import into chloroplast stroma | 3.93E-03 |
| 76 | GO:0006006: glucose metabolic process | 4.30E-03 |
| 77 | GO:0005985: sucrose metabolic process | 5.04E-03 |
| 78 | GO:0019344: cysteine biosynthetic process | 5.84E-03 |
| 79 | GO:0048511: rhythmic process | 6.67E-03 |
| 80 | GO:0009269: response to desiccation | 6.67E-03 |
| 81 | GO:0009814: defense response, incompatible interaction | 7.11E-03 |
| 82 | GO:0006012: galactose metabolic process | 7.55E-03 |
| 83 | GO:0006633: fatty acid biosynthetic process | 7.82E-03 |
| 84 | GO:0010182: sugar mediated signaling pathway | 9.41E-03 |
| 85 | GO:0015986: ATP synthesis coupled proton transport | 9.91E-03 |
| 86 | GO:0042752: regulation of circadian rhythm | 9.91E-03 |
| 87 | GO:0006810: transport | 1.02E-02 |
| 88 | GO:0019252: starch biosynthetic process | 1.04E-02 |
| 89 | GO:0000302: response to reactive oxygen species | 1.09E-02 |
| 90 | GO:0009627: systemic acquired resistance | 1.53E-02 |
| 91 | GO:0042128: nitrate assimilation | 1.53E-02 |
| 92 | GO:0010411: xyloglucan metabolic process | 1.59E-02 |
| 93 | GO:0080167: response to karrikin | 1.66E-02 |
| 94 | GO:0009407: toxin catabolic process | 1.83E-02 |
| 95 | GO:0007568: aging | 1.89E-02 |
| 96 | GO:0016051: carbohydrate biosynthetic process | 2.02E-02 |
| 97 | GO:0045087: innate immune response | 2.02E-02 |
| 98 | GO:0030001: metal ion transport | 2.22E-02 |
| 99 | GO:0032259: methylation | 2.34E-02 |
| 100 | GO:0009644: response to high light intensity | 2.56E-02 |
| 101 | GO:0009636: response to toxic substance | 2.63E-02 |
| 102 | GO:0006508: proteolysis | 3.06E-02 |
| 103 | GO:0006096: glycolytic process | 3.37E-02 |
| 104 | GO:0009626: plant-type hypersensitive response | 3.53E-02 |
| 105 | GO:0009624: response to nematode | 3.85E-02 |
| 106 | GO:0006396: RNA processing | 3.93E-02 |
| 107 | GO:0042744: hydrogen peroxide catabolic process | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 2 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 3 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 4 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 5 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 6 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 7 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 8 | GO:0051920: peroxiredoxin activity | 2.59E-07 |
| 9 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 6.25E-07 |
| 10 | GO:0016209: antioxidant activity | 6.58E-07 |
| 11 | GO:0016168: chlorophyll binding | 3.63E-06 |
| 12 | GO:0016851: magnesium chelatase activity | 5.58E-06 |
| 13 | GO:0031409: pigment binding | 9.98E-06 |
| 14 | GO:0019843: rRNA binding | 8.87E-05 |
| 15 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 1.10E-04 |
| 16 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.10E-04 |
| 17 | GO:0045485: omega-6 fatty acid desaturase activity | 1.10E-04 |
| 18 | GO:0004089: carbonate dehydratase activity | 2.30E-04 |
| 19 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.57E-04 |
| 20 | GO:0042389: omega-3 fatty acid desaturase activity | 2.57E-04 |
| 21 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.57E-04 |
| 22 | GO:0008266: poly(U) RNA binding | 2.61E-04 |
| 23 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.00E-04 |
| 24 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 4.25E-04 |
| 25 | GO:0004324: ferredoxin-NADP+ reductase activity | 4.25E-04 |
| 26 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 4.25E-04 |
| 27 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 6.10E-04 |
| 28 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 6.10E-04 |
| 29 | GO:0046556: alpha-L-arabinofuranosidase activity | 8.10E-04 |
| 30 | GO:0004659: prenyltransferase activity | 8.10E-04 |
| 31 | GO:0009044: xylan 1,4-beta-xylosidase activity | 8.10E-04 |
| 32 | GO:0003959: NADPH dehydrogenase activity | 1.02E-03 |
| 33 | GO:0016688: L-ascorbate peroxidase activity | 1.25E-03 |
| 34 | GO:0004130: cytochrome-c peroxidase activity | 1.25E-03 |
| 35 | GO:0042578: phosphoric ester hydrolase activity | 1.25E-03 |
| 36 | GO:0004602: glutathione peroxidase activity | 1.49E-03 |
| 37 | GO:0008235: metalloexopeptidase activity | 1.75E-03 |
| 38 | GO:0004222: metalloendopeptidase activity | 1.78E-03 |
| 39 | GO:0004034: aldose 1-epimerase activity | 2.03E-03 |
| 40 | GO:0004601: peroxidase activity | 2.13E-03 |
| 41 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.32E-03 |
| 42 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.04E-03 |
| 43 | GO:0004177: aminopeptidase activity | 3.59E-03 |
| 44 | GO:0031072: heat shock protein binding | 4.30E-03 |
| 45 | GO:0005509: calcium ion binding | 5.03E-03 |
| 46 | GO:0004176: ATP-dependent peptidase activity | 6.67E-03 |
| 47 | GO:0022891: substrate-specific transmembrane transporter activity | 7.55E-03 |
| 48 | GO:0030570: pectate lyase activity | 7.55E-03 |
| 49 | GO:0003756: protein disulfide isomerase activity | 8.00E-03 |
| 50 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 9.41E-03 |
| 51 | GO:0016853: isomerase activity | 9.91E-03 |
| 52 | GO:0008237: metallopeptidase activity | 1.30E-02 |
| 53 | GO:0046872: metal ion binding | 1.50E-02 |
| 54 | GO:0003735: structural constituent of ribosome | 1.61E-02 |
| 55 | GO:0050661: NADP binding | 2.22E-02 |
| 56 | GO:0004364: glutathione transferase activity | 2.35E-02 |
| 57 | GO:0005198: structural molecule activity | 2.63E-02 |
| 58 | GO:0051287: NAD binding | 2.77E-02 |
| 59 | GO:0003690: double-stranded DNA binding | 3.07E-02 |
| 60 | GO:0016491: oxidoreductase activity | 3.26E-02 |
| 61 | GO:0008289: lipid binding | 3.40E-02 |
| 62 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.45E-02 |
| 63 | GO:0003729: mRNA binding | 3.79E-02 |
| 64 | GO:0051082: unfolded protein binding | 3.85E-02 |
| 65 | GO:0003723: RNA binding | 4.58E-02 |
| 66 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.60E-02 |
| 67 | GO:0016829: lyase activity | 4.77E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 4.43E-53 |
| 4 | GO:0009507: chloroplast | 2.35E-47 |
| 5 | GO:0009534: chloroplast thylakoid | 1.81E-37 |
| 6 | GO:0009579: thylakoid | 1.99E-30 |
| 7 | GO:0009941: chloroplast envelope | 1.45E-29 |
| 8 | GO:0009570: chloroplast stroma | 8.44E-25 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 1.38E-15 |
| 10 | GO:0031977: thylakoid lumen | 2.84E-12 |
| 11 | GO:0030095: chloroplast photosystem II | 6.08E-10 |
| 12 | GO:0010319: stromule | 6.92E-10 |
| 13 | GO:0010287: plastoglobule | 5.29E-09 |
| 14 | GO:0009706: chloroplast inner membrane | 1.03E-07 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 2.16E-07 |
| 16 | GO:0009523: photosystem II | 1.20E-06 |
| 17 | GO:0019898: extrinsic component of membrane | 1.20E-06 |
| 18 | GO:0048046: apoplast | 1.81E-06 |
| 19 | GO:0010007: magnesium chelatase complex | 2.36E-06 |
| 20 | GO:0009517: PSII associated light-harvesting complex II | 1.06E-05 |
| 21 | GO:0009522: photosystem I | 4.23E-05 |
| 22 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.03E-04 |
| 23 | GO:0009783: photosystem II antenna complex | 1.10E-04 |
| 24 | GO:0042170: plastid membrane | 2.57E-04 |
| 25 | GO:0030076: light-harvesting complex | 2.94E-04 |
| 26 | GO:0009528: plastid inner membrane | 4.25E-04 |
| 27 | GO:0005960: glycine cleavage complex | 6.10E-04 |
| 28 | GO:0009527: plastid outer membrane | 8.10E-04 |
| 29 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.25E-03 |
| 30 | GO:0009533: chloroplast stromal thylakoid | 1.75E-03 |
| 31 | GO:0009538: photosystem I reaction center | 2.03E-03 |
| 32 | GO:0042644: chloroplast nucleoid | 2.62E-03 |
| 33 | GO:0031969: chloroplast membrane | 2.79E-03 |
| 34 | GO:0032040: small-subunit processome | 3.93E-03 |
| 35 | GO:0016020: membrane | 4.00E-03 |
| 36 | GO:0009508: plastid chromosome | 4.30E-03 |
| 37 | GO:0005840: ribosome | 6.11E-03 |
| 38 | GO:0042651: thylakoid membrane | 6.25E-03 |
| 39 | GO:0015935: small ribosomal subunit | 6.67E-03 |
| 40 | GO:0009532: plastid stroma | 6.67E-03 |
| 41 | GO:0009295: nucleoid | 1.30E-02 |
| 42 | GO:0030529: intracellular ribonucleoprotein complex | 1.42E-02 |
| 43 | GO:0009707: chloroplast outer membrane | 1.71E-02 |
| 44 | GO:0016021: integral component of membrane | 3.74E-02 |