co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G04540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
2	GO:0070212: protein poly-ADP-ribosylation	0.00E+00
3	GO:0002191: cap-dependent translational initiation	0.00E+00
4	GO:0002376: immune system process	0.00E+00
5	GO:0034196: acylglycerol transport	0.00E+00
6	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
7	GO:0006721: terpenoid metabolic process	0.00E+00
8	GO:0051553: flavone biosynthetic process	0.00E+00
9	GO:0072722: response to amitrole	0.00E+00
10	GO:0006042: glucosamine biosynthetic process	0.00E+00
11	GO:1901137: carbohydrate derivative biosynthetic process	0.00E+00
12	GO:0006457: protein folding	5.80E-09
13	GO:0046686: response to cadmium ion	9.63E-09
14	GO:0009627: systemic acquired resistance	4.16E-08
15	GO:0042742: defense response to bacterium	6.81E-08
16	GO:0034976: response to endoplasmic reticulum stress	1.37E-06
17	GO:0030968: endoplasmic reticulum unfolded protein response	6.03E-06
18	GO:0009617: response to bacterium	2.06E-05
19	GO:0016998: cell wall macromolecule catabolic process	8.49E-05
20	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.23E-04
21	GO:0010150: leaf senescence	1.27E-04
22	GO:0006605: protein targeting	2.06E-04
23	GO:0006422: aspartyl-tRNA aminoacylation	2.32E-04
24	GO:1990022: RNA polymerase III complex localization to nucleus	2.32E-04
25	GO:0009700: indole phytoalexin biosynthetic process	2.32E-04
26	GO:0010230: alternative respiration	2.32E-04
27	GO:0044376: RNA polymerase II complex import to nucleus	2.32E-04
28	GO:0042964: thioredoxin reduction	2.32E-04
29	GO:0050691: regulation of defense response to virus by host	2.32E-04
30	GO:1990052: ER to chloroplast lipid transport	2.32E-04
31	GO:0010266: response to vitamin B1	2.32E-04
32	GO:0019276: UDP-N-acetylgalactosamine metabolic process	2.32E-04
33	GO:0051791: medium-chain fatty acid metabolic process	2.32E-04
34	GO:0006047: UDP-N-acetylglucosamine metabolic process	2.32E-04
35	GO:0016487: farnesol metabolic process	2.32E-04
36	GO:0009699: phenylpropanoid biosynthetic process	2.55E-04
37	GO:0009553: embryo sac development	3.40E-04
38	GO:0009651: response to salt stress	4.15E-04
39	GO:0006032: chitin catabolic process	4.30E-04
40	GO:0031349: positive regulation of defense response	5.15E-04
41	GO:0030003: cellular cation homeostasis	5.15E-04
42	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.15E-04
43	GO:0045905: positive regulation of translational termination	5.15E-04
44	GO:0031204: posttranslational protein targeting to membrane, translocation	5.15E-04
45	GO:0045901: positive regulation of translational elongation	5.15E-04
46	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	5.15E-04
47	GO:0006452: translational frameshifting	5.15E-04
48	GO:0045454: cell redox homeostasis	6.22E-04
49	GO:0002237: response to molecule of bacterial origin	7.26E-04
50	GO:0006099: tricarboxylic acid cycle	7.81E-04
51	GO:0006421: asparaginyl-tRNA aminoacylation	8.37E-04
52	GO:0010581: regulation of starch biosynthetic process	8.37E-04
53	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	8.37E-04
54	GO:0006954: inflammatory response	8.37E-04
55	GO:0055074: calcium ion homeostasis	8.37E-04
56	GO:0006011: UDP-glucose metabolic process	8.37E-04
57	GO:0010272: response to silver ion	8.37E-04
58	GO:0050832: defense response to fungus	8.95E-04
59	GO:0000162: tryptophan biosynthetic process	9.01E-04
60	GO:0051707: response to other organism	1.01E-03
61	GO:0072334: UDP-galactose transmembrane transport	1.19E-03
62	GO:0033014: tetrapyrrole biosynthetic process	1.19E-03
63	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.19E-03
64	GO:0002239: response to oomycetes	1.19E-03
65	GO:0030433: ubiquitin-dependent ERAD pathway	1.31E-03
66	GO:0071456: cellular response to hypoxia	1.31E-03
67	GO:0009306: protein secretion	1.55E-03
68	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.59E-03
69	GO:0000304: response to singlet oxygen	2.03E-03
70	GO:0009697: salicylic acid biosynthetic process	2.03E-03
71	GO:0005513: detection of calcium ion	2.03E-03
72	GO:0045116: protein neddylation	2.03E-03
73	GO:0010200: response to chitin	2.33E-03
74	GO:0009414: response to water deprivation	2.35E-03
75	GO:0010193: response to ozone	2.40E-03
76	GO:0001731: formation of translation preinitiation complex	2.50E-03
77	GO:0030163: protein catabolic process	2.73E-03
78	GO:0042372: phylloquinone biosynthetic process	3.00E-03
79	GO:0009615: response to virus	3.46E-03
80	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.54E-03
81	GO:1902074: response to salt	3.54E-03
82	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.10E-03
83	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.10E-03
84	GO:0030091: protein repair	4.10E-03
85	GO:0031540: regulation of anthocyanin biosynthetic process	4.10E-03
86	GO:0006102: isocitrate metabolic process	4.10E-03
87	GO:0016049: cell growth	4.28E-03
88	GO:0006952: defense response	4.44E-03
89	GO:0019430: removal of superoxide radicals	4.70E-03
90	GO:0010497: plasmodesmata-mediated intercellular transport	4.70E-03
91	GO:0010120: camalexin biosynthetic process	4.70E-03
92	GO:0009813: flavonoid biosynthetic process	4.73E-03
93	GO:0055114: oxidation-reduction process	5.20E-03
94	GO:0006783: heme biosynthetic process	5.32E-03
95	GO:0010112: regulation of systemic acquired resistance	5.32E-03
96	GO:0015780: nucleotide-sugar transport	5.32E-03
97	GO:0046685: response to arsenic-containing substance	5.32E-03
98	GO:2000280: regulation of root development	5.97E-03
99	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.97E-03
100	GO:0010205: photoinhibition	5.97E-03
101	GO:0009870: defense response signaling pathway, resistance gene-dependent	6.65E-03
102	GO:0010215: cellulose microfibril organization	6.65E-03
103	GO:0042542: response to hydrogen peroxide	7.07E-03
104	GO:0006816: calcium ion transport	7.35E-03
105	GO:0009682: induced systemic resistance	7.35E-03
106	GO:0052544: defense response by callose deposition in cell wall	7.35E-03
107	GO:0009089: lysine biosynthetic process via diaminopimelate	7.35E-03
108	GO:0009073: aromatic amino acid family biosynthetic process	7.35E-03
109	GO:0000272: polysaccharide catabolic process	7.35E-03
110	GO:0006790: sulfur compound metabolic process	8.08E-03
111	GO:0009735: response to cytokinin	8.37E-03
112	GO:0006979: response to oxidative stress	8.55E-03
113	GO:0010075: regulation of meristem growth	8.84E-03
114	GO:0031347: regulation of defense response	8.91E-03
115	GO:0006541: glutamine metabolic process	9.62E-03
116	GO:0006446: regulation of translational initiation	9.62E-03
117	GO:0009934: regulation of meristem structural organization	9.62E-03
118	GO:0006468: protein phosphorylation	1.02E-02
119	GO:0010224: response to UV-B	1.03E-02
120	GO:0046854: phosphatidylinositol phosphorylation	1.04E-02
121	GO:0009863: salicylic acid mediated signaling pathway	1.21E-02
122	GO:0080147: root hair cell development	1.21E-02
123	GO:0009626: plant-type hypersensitive response	1.25E-02
124	GO:0015031: protein transport	1.28E-02
125	GO:0006874: cellular calcium ion homeostasis	1.30E-02
126	GO:0006886: intracellular protein transport	1.38E-02
127	GO:0009409: response to cold	1.42E-02
128	GO:0007131: reciprocal meiotic recombination	1.48E-02
129	GO:0031348: negative regulation of defense response	1.48E-02
130	GO:0009411: response to UV	1.57E-02
131	GO:0009625: response to insect	1.57E-02
132	GO:0010227: floral organ abscission	1.57E-02
133	GO:0019722: calcium-mediated signaling	1.67E-02
134	GO:0010089: xylem development	1.67E-02
135	GO:0009751: response to salicylic acid	1.70E-02
136	GO:0009408: response to heat	1.73E-02
137	GO:0000413: protein peptidyl-prolyl isomerization	1.87E-02
138	GO:0010118: stomatal movement	1.87E-02
139	GO:0010197: polar nucleus fusion	1.97E-02
140	GO:0048868: pollen tube development	1.97E-02
141	GO:0006623: protein targeting to vacuole	2.18E-02
142	GO:0006508: proteolysis	2.18E-02
143	GO:0009851: auxin biosynthetic process	2.18E-02
144	GO:0006413: translational initiation	2.29E-02
145	GO:0002229: defense response to oomycetes	2.29E-02
146	GO:0000302: response to reactive oxygen species	2.29E-02
147	GO:0006635: fatty acid beta-oxidation	2.29E-02
148	GO:0009630: gravitropism	2.40E-02
149	GO:0010252: auxin homeostasis	2.62E-02
150	GO:0009567: double fertilization forming a zygote and endosperm	2.62E-02
151	GO:0016126: sterol biosynthetic process	2.98E-02
152	GO:0009737: response to abscisic acid	3.07E-02
153	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.10E-02
154	GO:0009816: defense response to bacterium, incompatible interaction	3.10E-02
155	GO:0015995: chlorophyll biosynthetic process	3.34E-02
156	GO:0006950: response to stress	3.34E-02
157	GO:0016311: dephosphorylation	3.47E-02
158	GO:0009555: pollen development	3.54E-02
159	GO:0009817: defense response to fungus, incompatible interaction	3.59E-02
160	GO:0008219: cell death	3.59E-02
161	GO:0048527: lateral root development	3.98E-02

Rank	GO Term	Adjusted P value
1	GO:0046424: ferulate 5-hydroxylase activity	0.00E+00
2	GO:0004631: phosphomevalonate kinase activity	0.00E+00
3	GO:0098808: mRNA cap binding	0.00E+00
4	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
5	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
6	GO:0005212: structural constituent of eye lens	0.00E+00
7	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
8	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
9	GO:0047886: farnesol dehydrogenase activity	0.00E+00
10	GO:0004360: glutamine-fructose-6-phosphate transaminase (isomerizing) activity	0.00E+00
11	GO:0008752: FMN reductase activity	0.00E+00
12	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
13	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
14	GO:0033759: flavone synthase activity	0.00E+00
15	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
16	GO:0051082: unfolded protein binding	2.55E-06
17	GO:0005460: UDP-glucose transmembrane transporter activity	2.08E-05
18	GO:0005509: calcium ion binding	2.58E-05
19	GO:0005459: UDP-galactose transmembrane transporter activity	6.05E-05
20	GO:0047631: ADP-ribose diphosphatase activity	6.05E-05
21	GO:0000210: NAD+ diphosphatase activity	8.88E-05
22	GO:0003756: protein disulfide isomerase activity	1.26E-04
23	GO:0097367: carbohydrate derivative binding	2.32E-04
24	GO:0004815: aspartate-tRNA ligase activity	2.32E-04
25	GO:0080042: ADP-glucose pyrophosphohydrolase activity	2.32E-04
26	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	2.32E-04
27	GO:0004325: ferrochelatase activity	2.32E-04
28	GO:0048037: cofactor binding	2.32E-04
29	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	2.32E-04
30	GO:0008909: isochorismate synthase activity	2.32E-04
31	GO:0010285: L,L-diaminopimelate aminotransferase activity	2.32E-04
32	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.32E-04
33	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	2.32E-04
34	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.32E-04
35	GO:0004568: chitinase activity	4.30E-04
36	GO:0017110: nucleoside-diphosphatase activity	5.15E-04
37	GO:0004775: succinate-CoA ligase (ADP-forming) activity	5.15E-04
38	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	5.15E-04
39	GO:0004776: succinate-CoA ligase (GDP-forming) activity	5.15E-04
40	GO:0080041: ADP-ribose pyrophosphohydrolase activity	5.15E-04
41	GO:0019781: NEDD8 activating enzyme activity	5.15E-04
42	GO:0003746: translation elongation factor activity	7.38E-04
43	GO:0008061: chitin binding	8.11E-04
44	GO:0004190: aspartic-type endopeptidase activity	8.11E-04
45	GO:0004148: dihydrolipoyl dehydrogenase activity	8.37E-04
46	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	8.37E-04
47	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	8.37E-04
48	GO:0004816: asparagine-tRNA ligase activity	8.37E-04
49	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	8.37E-04
50	GO:0004049: anthranilate synthase activity	8.37E-04
51	GO:0000030: mannosyltransferase activity	8.37E-04
52	GO:0035529: NADH pyrophosphatase activity	1.19E-03
53	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.19E-03
54	GO:0004298: threonine-type endopeptidase activity	1.20E-03
55	GO:0051287: NAD binding	1.28E-03
56	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.59E-03
57	GO:0004834: tryptophan synthase activity	1.59E-03
58	GO:0008641: small protein activating enzyme activity	2.03E-03
59	GO:0003997: acyl-CoA oxidase activity	2.03E-03
60	GO:0045431: flavonol synthase activity	2.03E-03
61	GO:0008233: peptidase activity	2.16E-03
62	GO:0031593: polyubiquitin binding	2.50E-03
63	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.50E-03
64	GO:0030976: thiamine pyrophosphate binding	2.50E-03
65	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.00E-03
66	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.00E-03
67	GO:0070300: phosphatidic acid binding	3.00E-03
68	GO:0005261: cation channel activity	3.00E-03
69	GO:0004656: procollagen-proline 4-dioxygenase activity	3.00E-03
70	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	3.00E-03
71	GO:0008483: transaminase activity	3.08E-03
72	GO:0004674: protein serine/threonine kinase activity	3.28E-03
73	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.54E-03
74	GO:0008320: protein transmembrane transporter activity	3.54E-03
75	GO:0004683: calmodulin-dependent protein kinase activity	4.07E-03
76	GO:0043022: ribosome binding	4.10E-03
77	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.50E-03
78	GO:0005524: ATP binding	4.60E-03
79	GO:0008135: translation factor activity, RNA binding	4.70E-03
80	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	5.21E-03
81	GO:0050897: cobalt ion binding	5.21E-03
82	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	5.71E-03
83	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.97E-03
84	GO:0004129: cytochrome-c oxidase activity	7.35E-03
85	GO:0008559: xenobiotic-transporting ATPase activity	7.35E-03
86	GO:0031072: heat shock protein binding	8.84E-03
87	GO:0005262: calcium channel activity	8.84E-03
88	GO:0000166: nucleotide binding	9.58E-03
89	GO:0050660: flavin adenine dinucleotide binding	9.64E-03
90	GO:0003712: transcription cofactor activity	1.04E-02
91	GO:0005217: intracellular ligand-gated ion channel activity	1.04E-02
92	GO:0004970: ionotropic glutamate receptor activity	1.04E-02
93	GO:0031625: ubiquitin protein ligase binding	1.10E-02
94	GO:0031418: L-ascorbic acid binding	1.21E-02
95	GO:0043130: ubiquitin binding	1.21E-02
96	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.46E-02
97	GO:0016779: nucleotidyltransferase activity	1.48E-02
98	GO:0016301: kinase activity	1.54E-02
99	GO:0010181: FMN binding	2.07E-02
100	GO:0050662: coenzyme binding	2.07E-02
101	GO:0004791: thioredoxin-disulfide reductase activity	2.07E-02
102	GO:0016853: isomerase activity	2.07E-02
103	GO:0008565: protein transporter activity	2.13E-02
104	GO:0005506: iron ion binding	2.69E-02
105	GO:0003743: translation initiation factor activity	2.87E-02
106	GO:0042802: identical protein binding	3.12E-02
107	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.22E-02
108	GO:0030247: polysaccharide binding	3.34E-02
109	GO:0030145: manganese ion binding	3.98E-02
110	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.39E-02
111	GO:0004497: monooxygenase activity	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
2	GO:0005784: Sec61 translocon complex	0.00E+00
3	GO:0005783: endoplasmic reticulum	7.93E-16
4	GO:0005788: endoplasmic reticulum lumen	1.47E-11
5	GO:0005829: cytosol	1.24E-06
6	GO:0005774: vacuolar membrane	6.77E-06
7	GO:0005886: plasma membrane	1.01E-04
8	GO:0048046: apoplast	1.62E-04
9	GO:0045252: oxoglutarate dehydrogenase complex	2.32E-04
10	GO:0030134: ER to Golgi transport vesicle	5.15E-04
11	GO:0030176: integral component of endoplasmic reticulum membrane	8.11E-04
12	GO:0005839: proteasome core complex	1.20E-03
13	GO:0005789: endoplasmic reticulum membrane	1.76E-03
14	GO:0005618: cell wall	1.88E-03
15	GO:0005746: mitochondrial respiratory chain	2.03E-03
16	GO:0016282: eukaryotic 43S preinitiation complex	2.50E-03
17	GO:0016592: mediator complex	2.56E-03
18	GO:0016021: integral component of membrane	2.78E-03
19	GO:0033290: eukaryotic 48S preinitiation complex	3.00E-03
20	GO:0030173: integral component of Golgi membrane	3.00E-03
21	GO:0005623: cell	3.15E-03
22	GO:0009507: chloroplast	3.89E-03
23	GO:0019773: proteasome core complex, alpha-subunit complex	4.70E-03
24	GO:0030665: clathrin-coated vesicle membrane	5.97E-03
25	GO:0005740: mitochondrial envelope	6.65E-03
26	GO:0017119: Golgi transport complex	6.65E-03
27	GO:0009506: plasmodesma	7.90E-03
28	GO:0005750: mitochondrial respiratory chain complex III	9.62E-03
29	GO:0000502: proteasome complex	9.93E-03
30	GO:0005777: peroxisome	1.18E-02
31	GO:0005834: heterotrimeric G-protein complex	1.25E-02
32	GO:0005741: mitochondrial outer membrane	1.39E-02
33	GO:0031225: anchored component of membrane	1.87E-02
34	GO:0005759: mitochondrial matrix	2.23E-02
35	GO:0005773: vacuole	2.53E-02
36	GO:0032580: Golgi cisterna membrane	2.62E-02
37	GO:0016020: membrane	3.26E-02
38	GO:0009707: chloroplast outer membrane	3.59E-02
39	GO:0000151: ubiquitin ligase complex	3.59E-02
40	GO:0009536: plastid	3.71E-02
41	GO:0009505: plant-type cell wall	3.82E-02
42	GO:0000325: plant-type vacuole	3.98E-02
43	GO:0005576: extracellular region	4.54E-02
44	GO:0031902: late endosome membrane	4.81E-02