GO Enrichment Analysis of Co-expressed Genes with
AT4G04470
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046292: formaldehyde metabolic process | 0.00E+00 |
| 2 | GO:0006069: ethanol oxidation | 0.00E+00 |
| 3 | GO:0031990: mRNA export from nucleus in response to heat stress | 0.00E+00 |
| 4 | GO:0032780: negative regulation of ATPase activity | 0.00E+00 |
| 5 | GO:0080024: indolebutyric acid metabolic process | 6.65E-06 |
| 6 | GO:0090351: seedling development | 1.04E-05 |
| 7 | GO:0045454: cell redox homeostasis | 1.09E-04 |
| 8 | GO:0034402: recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex | 1.22E-04 |
| 9 | GO:1901183: positive regulation of camalexin biosynthetic process | 1.22E-04 |
| 10 | GO:0006772: thiamine metabolic process | 1.22E-04 |
| 11 | GO:0035266: meristem growth | 1.22E-04 |
| 12 | GO:0007292: female gamete generation | 1.22E-04 |
| 13 | GO:0006805: xenobiotic metabolic process | 1.22E-04 |
| 14 | GO:0006511: ubiquitin-dependent protein catabolic process | 1.67E-04 |
| 15 | GO:0006099: tricarboxylic acid cycle | 2.44E-04 |
| 16 | GO:0051788: response to misfolded protein | 2.82E-04 |
| 17 | GO:0007051: spindle organization | 2.82E-04 |
| 18 | GO:0080026: response to indolebutyric acid | 2.82E-04 |
| 19 | GO:0006101: citrate metabolic process | 2.82E-04 |
| 20 | GO:0045948: positive regulation of translational initiation | 2.82E-04 |
| 21 | GO:0007154: cell communication | 2.82E-04 |
| 22 | GO:0006597: spermine biosynthetic process | 2.82E-04 |
| 23 | GO:0051262: protein tetramerization | 2.82E-04 |
| 24 | GO:0010053: root epidermal cell differentiation | 3.37E-04 |
| 25 | GO:0060968: regulation of gene silencing | 4.65E-04 |
| 26 | GO:0000288: nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | 4.65E-04 |
| 27 | GO:1900055: regulation of leaf senescence | 4.65E-04 |
| 28 | GO:0071494: cellular response to UV-C | 4.65E-04 |
| 29 | GO:0072334: UDP-galactose transmembrane transport | 6.66E-04 |
| 30 | GO:0001676: long-chain fatty acid metabolic process | 6.66E-04 |
| 31 | GO:0006662: glycerol ether metabolic process | 8.17E-04 |
| 32 | GO:1902584: positive regulation of response to water deprivation | 8.84E-04 |
| 33 | GO:0015867: ATP transport | 8.84E-04 |
| 34 | GO:0010222: stem vascular tissue pattern formation | 8.84E-04 |
| 35 | GO:0070534: protein K63-linked ubiquitination | 8.84E-04 |
| 36 | GO:0019252: starch biosynthetic process | 9.36E-04 |
| 37 | GO:0046686: response to cadmium ion | 9.65E-04 |
| 38 | GO:0006635: fatty acid beta-oxidation | 9.99E-04 |
| 39 | GO:0006405: RNA export from nucleus | 1.12E-03 |
| 40 | GO:0045927: positive regulation of growth | 1.12E-03 |
| 41 | GO:0006564: L-serine biosynthetic process | 1.12E-03 |
| 42 | GO:0006097: glyoxylate cycle | 1.12E-03 |
| 43 | GO:0009229: thiamine diphosphate biosynthetic process | 1.12E-03 |
| 44 | GO:0043248: proteasome assembly | 1.37E-03 |
| 45 | GO:0009267: cellular response to starvation | 1.37E-03 |
| 46 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.37E-03 |
| 47 | GO:0035435: phosphate ion transmembrane transport | 1.37E-03 |
| 48 | GO:0006796: phosphate-containing compound metabolic process | 1.37E-03 |
| 49 | GO:0000060: protein import into nucleus, translocation | 1.37E-03 |
| 50 | GO:0006596: polyamine biosynthetic process | 1.37E-03 |
| 51 | GO:0002238: response to molecule of fungal origin | 1.37E-03 |
| 52 | GO:0006014: D-ribose metabolic process | 1.37E-03 |
| 53 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 1.37E-03 |
| 54 | GO:0006121: mitochondrial electron transport, succinate to ubiquinone | 1.37E-03 |
| 55 | GO:0010405: arabinogalactan protein metabolic process | 1.37E-03 |
| 56 | GO:0006301: postreplication repair | 1.37E-03 |
| 57 | GO:0006751: glutathione catabolic process | 1.37E-03 |
| 58 | GO:0015866: ADP transport | 1.37E-03 |
| 59 | GO:0048827: phyllome development | 1.37E-03 |
| 60 | GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation | 1.37E-03 |
| 61 | GO:0048232: male gamete generation | 1.37E-03 |
| 62 | GO:0034389: lipid particle organization | 1.64E-03 |
| 63 | GO:0009082: branched-chain amino acid biosynthetic process | 1.64E-03 |
| 64 | GO:0098655: cation transmembrane transport | 1.64E-03 |
| 65 | GO:0009099: valine biosynthetic process | 1.64E-03 |
| 66 | GO:0015977: carbon fixation | 1.64E-03 |
| 67 | GO:0006979: response to oxidative stress | 1.72E-03 |
| 68 | GO:0043090: amino acid import | 1.92E-03 |
| 69 | GO:1900056: negative regulation of leaf senescence | 1.92E-03 |
| 70 | GO:0080186: developmental vegetative growth | 1.92E-03 |
| 71 | GO:0071669: plant-type cell wall organization or biogenesis | 1.92E-03 |
| 72 | GO:0000082: G1/S transition of mitotic cell cycle | 1.92E-03 |
| 73 | GO:0050790: regulation of catalytic activity | 1.92E-03 |
| 74 | GO:0048767: root hair elongation | 1.94E-03 |
| 75 | GO:0006499: N-terminal protein myristoylation | 2.03E-03 |
| 76 | GO:0010043: response to zinc ion | 2.13E-03 |
| 77 | GO:0005978: glycogen biosynthetic process | 2.22E-03 |
| 78 | GO:0010078: maintenance of root meristem identity | 2.22E-03 |
| 79 | GO:0006102: isocitrate metabolic process | 2.22E-03 |
| 80 | GO:0034599: cellular response to oxidative stress | 2.43E-03 |
| 81 | GO:0006367: transcription initiation from RNA polymerase II promoter | 2.54E-03 |
| 82 | GO:0010120: camalexin biosynthetic process | 2.54E-03 |
| 83 | GO:0009097: isoleucine biosynthetic process | 2.54E-03 |
| 84 | GO:0006839: mitochondrial transport | 2.65E-03 |
| 85 | GO:0006631: fatty acid metabolic process | 2.76E-03 |
| 86 | GO:0009821: alkaloid biosynthetic process | 2.87E-03 |
| 87 | GO:0046916: cellular transition metal ion homeostasis | 2.87E-03 |
| 88 | GO:0009098: leucine biosynthetic process | 3.21E-03 |
| 89 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 3.21E-03 |
| 90 | GO:0071577: zinc II ion transmembrane transport | 3.21E-03 |
| 91 | GO:0000103: sulfate assimilation | 3.57E-03 |
| 92 | GO:0048829: root cap development | 3.57E-03 |
| 93 | GO:0009807: lignan biosynthetic process | 3.94E-03 |
| 94 | GO:0010015: root morphogenesis | 3.94E-03 |
| 95 | GO:0009809: lignin biosynthetic process | 4.02E-03 |
| 96 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.16E-03 |
| 97 | GO:0009933: meristem structural organization | 5.12E-03 |
| 98 | GO:0010039: response to iron ion | 5.54E-03 |
| 99 | GO:0055114: oxidation-reduction process | 6.00E-03 |
| 100 | GO:0007010: cytoskeleton organization | 6.42E-03 |
| 101 | GO:0006289: nucleotide-excision repair | 6.42E-03 |
| 102 | GO:2000377: regulation of reactive oxygen species metabolic process | 6.42E-03 |
| 103 | GO:0006825: copper ion transport | 6.87E-03 |
| 104 | GO:0006366: transcription from RNA polymerase II promoter | 7.34E-03 |
| 105 | GO:0030433: ubiquitin-dependent ERAD pathway | 7.81E-03 |
| 106 | GO:0006012: galactose metabolic process | 8.30E-03 |
| 107 | GO:0019722: calcium-mediated signaling | 8.80E-03 |
| 108 | GO:0051028: mRNA transport | 9.31E-03 |
| 109 | GO:0034220: ion transmembrane transport | 9.83E-03 |
| 110 | GO:0010150: leaf senescence | 9.86E-03 |
| 111 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 1.10E-02 |
| 112 | GO:0010193: response to ozone | 1.20E-02 |
| 113 | GO:0006810: transport | 1.25E-02 |
| 114 | GO:0031047: gene silencing by RNA | 1.26E-02 |
| 115 | GO:0010252: auxin homeostasis | 1.38E-02 |
| 116 | GO:0006914: autophagy | 1.38E-02 |
| 117 | GO:0010286: heat acclimation | 1.44E-02 |
| 118 | GO:0009615: response to virus | 1.56E-02 |
| 119 | GO:0006974: cellular response to DNA damage stimulus | 1.69E-02 |
| 120 | GO:0006950: response to stress | 1.75E-02 |
| 121 | GO:0008219: cell death | 1.88E-02 |
| 122 | GO:0010311: lateral root formation | 1.95E-02 |
| 123 | GO:0007568: aging | 2.09E-02 |
| 124 | GO:0006865: amino acid transport | 2.16E-02 |
| 125 | GO:0009853: photorespiration | 2.23E-02 |
| 126 | GO:0045087: innate immune response | 2.23E-02 |
| 127 | GO:0030001: metal ion transport | 2.44E-02 |
| 128 | GO:0042542: response to hydrogen peroxide | 2.59E-02 |
| 129 | GO:0032259: methylation | 2.69E-02 |
| 130 | GO:0009644: response to high light intensity | 2.82E-02 |
| 131 | GO:0009636: response to toxic substance | 2.90E-02 |
| 132 | GO:0009965: leaf morphogenesis | 2.90E-02 |
| 133 | GO:0048364: root development | 2.93E-02 |
| 134 | GO:0006812: cation transport | 3.14E-02 |
| 135 | GO:0042538: hyperosmotic salinity response | 3.14E-02 |
| 136 | GO:0009733: response to auxin | 3.17E-02 |
| 137 | GO:0006486: protein glycosylation | 3.30E-02 |
| 138 | GO:0006508: proteolysis | 3.74E-02 |
| 139 | GO:0048316: seed development | 3.80E-02 |
| 140 | GO:0048367: shoot system development | 3.80E-02 |
| 141 | GO:0009620: response to fungus | 3.98E-02 |
| 142 | GO:0016569: covalent chromatin modification | 4.06E-02 |
| 143 | GO:0018105: peptidyl-serine phosphorylation | 4.33E-02 |
| 144 | GO:0009738: abscisic acid-activated signaling pathway | 4.79E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004622: lysophospholipase activity | 0.00E+00 |
| 2 | GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity | 0.00E+00 |
| 3 | GO:0003846: 2-acylglycerol O-acyltransferase activity | 0.00E+00 |
| 4 | GO:0042030: ATPase inhibitor activity | 0.00E+00 |
| 5 | GO:0080007: S-nitrosoglutathione reductase activity | 0.00E+00 |
| 6 | GO:0004298: threonine-type endopeptidase activity | 2.08E-05 |
| 7 | GO:0015035: protein disulfide oxidoreductase activity | 7.96E-05 |
| 8 | GO:0004112: cyclic-nucleotide phosphodiesterase activity | 1.22E-04 |
| 9 | GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity | 1.22E-04 |
| 10 | GO:0004788: thiamine diphosphokinase activity | 1.22E-04 |
| 11 | GO:0019707: protein-cysteine S-acyltransferase activity | 1.22E-04 |
| 12 | GO:0016768: spermine synthase activity | 1.22E-04 |
| 13 | GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity | 1.22E-04 |
| 14 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 2.82E-04 |
| 15 | GO:0018708: thiol S-methyltransferase activity | 2.82E-04 |
| 16 | GO:0015036: disulfide oxidoreductase activity | 2.82E-04 |
| 17 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 2.82E-04 |
| 18 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.82E-04 |
| 19 | GO:0003994: aconitate hydratase activity | 2.82E-04 |
| 20 | GO:0004766: spermidine synthase activity | 2.82E-04 |
| 21 | GO:0008964: phosphoenolpyruvate carboxylase activity | 4.65E-04 |
| 22 | GO:0003840: gamma-glutamyltransferase activity | 4.65E-04 |
| 23 | GO:0036374: glutathione hydrolase activity | 4.65E-04 |
| 24 | GO:0008430: selenium binding | 4.65E-04 |
| 25 | GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity | 6.66E-04 |
| 26 | GO:0052656: L-isoleucine transaminase activity | 6.66E-04 |
| 27 | GO:0052654: L-leucine transaminase activity | 6.66E-04 |
| 28 | GO:0004300: enoyl-CoA hydratase activity | 6.66E-04 |
| 29 | GO:0052655: L-valine transaminase activity | 6.66E-04 |
| 30 | GO:0047134: protein-disulfide reductase activity | 7.05E-04 |
| 31 | GO:0004791: thioredoxin-disulfide reductase activity | 8.75E-04 |
| 32 | GO:0004084: branched-chain-amino-acid transaminase activity | 8.84E-04 |
| 33 | GO:0070628: proteasome binding | 8.84E-04 |
| 34 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 8.84E-04 |
| 35 | GO:0010279: indole-3-acetic acid amido synthetase activity | 8.84E-04 |
| 36 | GO:0005459: UDP-galactose transmembrane transporter activity | 1.12E-03 |
| 37 | GO:0005452: inorganic anion exchanger activity | 1.12E-03 |
| 38 | GO:0000104: succinate dehydrogenase activity | 1.12E-03 |
| 39 | GO:0015301: anion:anion antiporter activity | 1.12E-03 |
| 40 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.13E-03 |
| 41 | GO:0031369: translation initiation factor binding | 1.37E-03 |
| 42 | GO:0031593: polyubiquitin binding | 1.37E-03 |
| 43 | GO:0016462: pyrophosphatase activity | 1.37E-03 |
| 44 | GO:0036402: proteasome-activating ATPase activity | 1.37E-03 |
| 45 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.37E-03 |
| 46 | GO:0102391: decanoate--CoA ligase activity | 1.64E-03 |
| 47 | GO:0004747: ribokinase activity | 1.64E-03 |
| 48 | GO:0003978: UDP-glucose 4-epimerase activity | 1.64E-03 |
| 49 | GO:0005347: ATP transmembrane transporter activity | 1.64E-03 |
| 50 | GO:0015217: ADP transmembrane transporter activity | 1.64E-03 |
| 51 | GO:0004427: inorganic diphosphatase activity | 1.92E-03 |
| 52 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.92E-03 |
| 53 | GO:0008865: fructokinase activity | 2.22E-03 |
| 54 | GO:0046914: transition metal ion binding | 2.54E-03 |
| 55 | GO:0005524: ATP binding | 3.00E-03 |
| 56 | GO:0016844: strictosidine synthase activity | 3.21E-03 |
| 57 | GO:0008233: peptidase activity | 3.25E-03 |
| 58 | GO:0008171: O-methyltransferase activity | 3.57E-03 |
| 59 | GO:0004129: cytochrome-c oxidase activity | 3.94E-03 |
| 60 | GO:0008794: arsenate reductase (glutaredoxin) activity | 3.94E-03 |
| 61 | GO:0005507: copper ion binding | 4.11E-03 |
| 62 | GO:0008378: galactosyltransferase activity | 4.32E-03 |
| 63 | GO:0008234: cysteine-type peptidase activity | 4.44E-03 |
| 64 | GO:0015114: phosphate ion transmembrane transporter activity | 4.71E-03 |
| 65 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 4.71E-03 |
| 66 | GO:0004022: alcohol dehydrogenase (NAD) activity | 4.71E-03 |
| 67 | GO:0005315: inorganic phosphate transmembrane transporter activity | 4.71E-03 |
| 68 | GO:0008131: primary amine oxidase activity | 5.12E-03 |
| 69 | GO:0017025: TBP-class protein binding | 5.54E-03 |
| 70 | GO:0005509: calcium ion binding | 6.20E-03 |
| 71 | GO:0043130: ubiquitin binding | 6.42E-03 |
| 72 | GO:0005385: zinc ion transmembrane transporter activity | 6.42E-03 |
| 73 | GO:0008324: cation transmembrane transporter activity | 6.87E-03 |
| 74 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 7.34E-03 |
| 75 | GO:0003727: single-stranded RNA binding | 8.80E-03 |
| 76 | GO:0016887: ATPase activity | 9.49E-03 |
| 77 | GO:0008536: Ran GTPase binding | 1.04E-02 |
| 78 | GO:0046873: metal ion transmembrane transporter activity | 1.04E-02 |
| 79 | GO:0016491: oxidoreductase activity | 1.06E-02 |
| 80 | GO:0048038: quinone binding | 1.20E-02 |
| 81 | GO:0004197: cysteine-type endopeptidase activity | 1.26E-02 |
| 82 | GO:0003684: damaged DNA binding | 1.38E-02 |
| 83 | GO:0008483: transaminase activity | 1.44E-02 |
| 84 | GO:0005200: structural constituent of cytoskeleton | 1.44E-02 |
| 85 | GO:0016597: amino acid binding | 1.50E-02 |
| 86 | GO:0000287: magnesium ion binding | 1.50E-02 |
| 87 | GO:0015250: water channel activity | 1.56E-02 |
| 88 | GO:0051213: dioxygenase activity | 1.56E-02 |
| 89 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 1.69E-02 |
| 90 | GO:0004683: calmodulin-dependent protein kinase activity | 1.75E-02 |
| 91 | GO:0005096: GTPase activator activity | 1.95E-02 |
| 92 | GO:0003697: single-stranded DNA binding | 2.23E-02 |
| 93 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.44E-02 |
| 94 | GO:0003924: GTPase activity | 2.81E-02 |
| 95 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.82E-02 |
| 96 | GO:0015293: symporter activity | 2.90E-02 |
| 97 | GO:0009055: electron carrier activity | 3.01E-02 |
| 98 | GO:0051287: NAD binding | 3.06E-02 |
| 99 | GO:0003824: catalytic activity | 3.08E-02 |
| 100 | GO:0005215: transporter activity | 3.11E-02 |
| 101 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.30E-02 |
| 102 | GO:0015171: amino acid transmembrane transporter activity | 3.55E-02 |
| 103 | GO:0031625: ubiquitin protein ligase binding | 3.55E-02 |
| 104 | GO:0045735: nutrient reservoir activity | 3.72E-02 |
| 105 | GO:0004386: helicase activity | 4.51E-02 |
| 106 | GO:0016758: transferase activity, transferring hexosyl groups | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005839: proteasome core complex | 2.08E-05 |
| 2 | GO:0000502: proteasome complex | 3.86E-05 |
| 3 | GO:0005737: cytoplasm | 5.50E-05 |
| 4 | GO:0019773: proteasome core complex, alpha-subunit complex | 9.69E-05 |
| 5 | GO:0005777: peroxisome | 1.13E-04 |
| 6 | GO:0000138: Golgi trans cisterna | 1.22E-04 |
| 7 | GO:0005829: cytosol | 1.33E-04 |
| 8 | GO:0031314: extrinsic component of mitochondrial inner membrane | 2.82E-04 |
| 9 | GO:0046861: glyoxysomal membrane | 4.65E-04 |
| 10 | GO:0005751: mitochondrial respiratory chain complex IV | 4.65E-04 |
| 11 | GO:0031372: UBC13-MMS2 complex | 8.84E-04 |
| 12 | GO:0005886: plasma membrane | 1.04E-03 |
| 13 | GO:0005773: vacuole | 1.15E-03 |
| 14 | GO:0031597: cytosolic proteasome complex | 1.64E-03 |
| 15 | GO:0030173: integral component of Golgi membrane | 1.64E-03 |
| 16 | GO:0031595: nuclear proteasome complex | 1.92E-03 |
| 17 | GO:0000421: autophagosome membrane | 2.22E-03 |
| 18 | GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) | 2.22E-03 |
| 19 | GO:0005779: integral component of peroxisomal membrane | 2.54E-03 |
| 20 | GO:0005811: lipid particle | 2.54E-03 |
| 21 | GO:0009514: glyoxysome | 2.54E-03 |
| 22 | GO:0008540: proteasome regulatory particle, base subcomplex | 3.21E-03 |
| 23 | GO:0005665: DNA-directed RNA polymerase II, core complex | 4.32E-03 |
| 24 | GO:0016602: CCAAT-binding factor complex | 4.71E-03 |
| 25 | GO:0005743: mitochondrial inner membrane | 4.96E-03 |
| 26 | GO:0005764: lysosome | 5.12E-03 |
| 27 | GO:0030176: integral component of endoplasmic reticulum membrane | 5.54E-03 |
| 28 | GO:0005769: early endosome | 5.98E-03 |
| 29 | GO:0045271: respiratory chain complex I | 6.87E-03 |
| 30 | GO:0031410: cytoplasmic vesicle | 7.81E-03 |
| 31 | GO:0005794: Golgi apparatus | 8.20E-03 |
| 32 | GO:0000785: chromatin | 1.26E-02 |
| 33 | GO:0000932: P-body | 1.56E-02 |
| 34 | GO:0005783: endoplasmic reticulum | 1.81E-02 |
| 35 | GO:0005643: nuclear pore | 1.88E-02 |
| 36 | GO:0016020: membrane | 2.78E-02 |
| 37 | GO:0005856: cytoskeleton | 2.90E-02 |
| 38 | GO:0031966: mitochondrial membrane | 3.14E-02 |
| 39 | GO:0005747: mitochondrial respiratory chain complex I | 3.80E-02 |
| 40 | GO:0009507: chloroplast | 4.68E-02 |