co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G04040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006241: CTP biosynthetic process	3.41E-05
2	GO:0006165: nucleoside diphosphate phosphorylation	3.41E-05
3	GO:0006228: UTP biosynthetic process	3.41E-05
4	GO:0006183: GTP biosynthetic process	4.83E-05
5	GO:0009955: adaxial/abaxial pattern specification	9.94E-05
6	GO:1901259: chloroplast rRNA processing	9.94E-05
7	GO:0006412: translation	1.05E-04
8	GO:0006605: protein targeting	1.39E-04
9	GO:0042255: ribosome assembly	1.39E-04
10	GO:0032544: plastid translation	1.60E-04
11	GO:0006783: heme biosynthetic process	1.83E-04
12	GO:0010205: photoinhibition	2.05E-04
13	GO:0006779: porphyrin-containing compound biosynthetic process	2.05E-04
14	GO:0006782: protoporphyrinogen IX biosynthetic process	2.29E-04
15	GO:0006636: unsaturated fatty acid biosynthetic process	3.81E-04
16	GO:0031408: oxylipin biosynthetic process	4.63E-04
17	GO:0009411: response to UV	5.20E-04
18	GO:0009306: protein secretion	5.49E-04
19	GO:0032502: developmental process	7.62E-04
20	GO:0010027: thylakoid membrane organization	9.24E-04
21	GO:0015995: chlorophyll biosynthetic process	1.03E-03
22	GO:0042542: response to hydrogen peroxide	1.47E-03
23	GO:0009585: red, far-red light phototransduction	1.83E-03
24	GO:0008380: RNA splicing	3.79E-03
25	GO:0009658: chloroplast organization	4.52E-03
26	GO:0042254: ribosome biogenesis	4.58E-03
27	GO:0015979: photosynthesis	5.74E-03
28	GO:0009734: auxin-activated signaling pathway	8.70E-03
29	GO:0042742: defense response to bacterium	1.69E-02
30	GO:0009409: response to cold	2.09E-02
31	GO:0046686: response to cadmium ion	2.31E-02
32	GO:0016310: phosphorylation	3.20E-02
33	GO:0055114: oxidation-reduction process	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
2	GO:0019843: rRNA binding	1.09E-08
3	GO:0004655: porphobilinogen synthase activity	4.26E-06
4	GO:0003735: structural constituent of ribosome	1.69E-05
5	GO:0004550: nucleoside diphosphate kinase activity	3.41E-05
6	GO:0016773: phosphotransferase activity, alcohol group as acceptor	6.40E-05
7	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.60E-04
8	GO:0003727: single-stranded RNA binding	5.49E-04
9	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.10E-03
10	GO:0003690: double-stranded DNA binding	1.88E-03
11	GO:0016491: oxidoreductase activity	1.98E-03
12	GO:0005507: copper ion binding	1.31E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	2.77E-10
3	GO:0009570: chloroplast stroma	9.24E-09
4	GO:0009579: thylakoid	1.29E-06
5	GO:0042646: plastid nucleoid	3.41E-05
6	GO:0009534: chloroplast thylakoid	5.40E-05
7	GO:0009941: chloroplast envelope	8.75E-05
8	GO:0016363: nuclear matrix	9.94E-05
9	GO:0005762: mitochondrial large ribosomal subunit	9.94E-05
10	GO:0005763: mitochondrial small ribosomal subunit	1.83E-04
11	GO:0000311: plastid large ribosomal subunit	2.77E-04
12	GO:0000312: plastid small ribosomal subunit	3.28E-04
13	GO:0009535: chloroplast thylakoid membrane	3.49E-04
14	GO:0009295: nucleoid	8.59E-04
15	GO:0005840: ribosome	1.59E-03
16	GO:0022627: cytosolic small ribosomal subunit	4.06E-03
17	GO:0031969: chloroplast membrane	5.24E-03
18	GO:0005622: intracellular	1.54E-02
19	GO:0005774: vacuolar membrane	4.09E-02
20	GO:0048046: apoplast	4.24E-02