co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G03190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090706: specification of plant organ position	0.00E+00
2	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0090627: plant epidermal cell differentiation	0.00E+00
5	GO:0000372: Group I intron splicing	0.00E+00
6	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.06E-05
7	GO:1902183: regulation of shoot apical meristem development	3.97E-05
8	GO:0010158: abaxial cell fate specification	3.97E-05
9	GO:0009416: response to light stimulus	4.74E-05
10	GO:0009913: epidermal cell differentiation	5.89E-05
11	GO:0080051: cutin transport	1.80E-04
12	GO:0043087: regulation of GTPase activity	1.80E-04
13	GO:2000021: regulation of ion homeostasis	1.80E-04
14	GO:0010450: inflorescence meristem growth	1.80E-04
15	GO:0010362: negative regulation of anion channel activity by blue light	1.80E-04
16	GO:0006824: cobalt ion transport	1.80E-04
17	GO:0043266: regulation of potassium ion transport	1.80E-04
18	GO:0010480: microsporocyte differentiation	1.80E-04
19	GO:0031338: regulation of vesicle fusion	1.80E-04
20	GO:2000024: regulation of leaf development	2.13E-04
21	GO:0009638: phototropism	2.55E-04
22	GO:0006695: cholesterol biosynthetic process	4.05E-04
23	GO:0015908: fatty acid transport	4.05E-04
24	GO:0034755: iron ion transmembrane transport	4.05E-04
25	GO:0010115: regulation of abscisic acid biosynthetic process	4.05E-04
26	GO:0010541: acropetal auxin transport	4.05E-04
27	GO:0007154: cell communication	4.05E-04
28	GO:0010540: basipetal auxin transport	5.13E-04
29	GO:0090630: activation of GTPase activity	6.61E-04
30	GO:0045165: cell fate commitment	6.61E-04
31	GO:0006013: mannose metabolic process	6.61E-04
32	GO:0010160: formation of animal organ boundary	6.61E-04
33	GO:0006518: peptide metabolic process	6.61E-04
34	GO:0043617: cellular response to sucrose starvation	6.61E-04
35	GO:0009944: polarity specification of adaxial/abaxial axis	7.06E-04
36	GO:0071484: cellular response to light intensity	9.45E-04
37	GO:0051639: actin filament network formation	9.45E-04
38	GO:0034059: response to anoxia	9.45E-04
39	GO:0080170: hydrogen peroxide transmembrane transport	9.45E-04
40	GO:0043481: anthocyanin accumulation in tissues in response to UV light	9.45E-04
41	GO:1901332: negative regulation of lateral root development	9.45E-04
42	GO:0010222: stem vascular tissue pattern formation	1.25E-03
43	GO:0051764: actin crosslink formation	1.25E-03
44	GO:0006085: acetyl-CoA biosynthetic process	1.25E-03
45	GO:0045727: positive regulation of translation	1.25E-03
46	GO:0015846: polyamine transport	1.25E-03
47	GO:0031122: cytoplasmic microtubule organization	1.25E-03
48	GO:0009902: chloroplast relocation	1.25E-03
49	GO:0010154: fruit development	1.37E-03
50	GO:0046777: protein autophosphorylation	1.41E-03
51	GO:0007165: signal transduction	1.55E-03
52	GO:0048825: cotyledon development	1.57E-03
53	GO:0010117: photoprotection	1.59E-03
54	GO:0006751: glutathione catabolic process	1.96E-03
55	GO:0048827: phyllome development	1.96E-03
56	GO:0042549: photosystem II stabilization	1.96E-03
57	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.96E-03
58	GO:0000741: karyogamy	1.96E-03
59	GO:0060918: auxin transport	1.96E-03
60	GO:0010067: procambium histogenesis	2.35E-03
61	GO:0005975: carbohydrate metabolic process	2.72E-03
62	GO:0048437: floral organ development	2.77E-03
63	GO:1900057: positive regulation of leaf senescence	2.77E-03
64	GO:0015995: chlorophyll biosynthetic process	2.84E-03
65	GO:0018298: protein-chromophore linkage	3.15E-03
66	GO:0008610: lipid biosynthetic process	3.21E-03
67	GO:0010093: specification of floral organ identity	3.67E-03
68	GO:0009932: cell tip growth	3.67E-03
69	GO:0032544: plastid translation	3.67E-03
70	GO:0009637: response to blue light	3.98E-03
71	GO:0000373: Group II intron splicing	4.15E-03
72	GO:0009051: pentose-phosphate shunt, oxidative branch	4.15E-03
73	GO:0045337: farnesyl diphosphate biosynthetic process	4.15E-03
74	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.15E-03
75	GO:0033384: geranyl diphosphate biosynthetic process	4.15E-03
76	GO:0006779: porphyrin-containing compound biosynthetic process	4.65E-03
77	GO:0006782: protoporphyrinogen IX biosynthetic process	5.18E-03
78	GO:0019538: protein metabolic process	5.18E-03
79	GO:0009733: response to auxin	5.46E-03
80	GO:0009644: response to high light intensity	5.54E-03
81	GO:0048229: gametophyte development	5.72E-03
82	GO:0000038: very long-chain fatty acid metabolic process	5.72E-03
83	GO:0009773: photosynthetic electron transport in photosystem I	5.72E-03
84	GO:0035556: intracellular signal transduction	5.99E-03
85	GO:0008361: regulation of cell size	6.28E-03
86	GO:0009664: plant-type cell wall organization	6.43E-03
87	GO:0010229: inflorescence development	6.86E-03
88	GO:0018107: peptidyl-threonine phosphorylation	6.86E-03
89	GO:0009718: anthocyanin-containing compound biosynthetic process	6.86E-03
90	GO:0010075: regulation of meristem growth	6.86E-03
91	GO:0010588: cotyledon vascular tissue pattern formation	6.86E-03
92	GO:0010102: lateral root morphogenesis	6.86E-03
93	GO:0009785: blue light signaling pathway	6.86E-03
94	GO:0030048: actin filament-based movement	6.86E-03
95	GO:0010223: secondary shoot formation	7.46E-03
96	GO:0009934: regulation of meristem structural organization	7.46E-03
97	GO:0010143: cutin biosynthetic process	7.46E-03
98	GO:0009933: meristem structural organization	7.46E-03
99	GO:0055085: transmembrane transport	7.92E-03
100	GO:0010030: positive regulation of seed germination	8.08E-03
101	GO:0010053: root epidermal cell differentiation	8.08E-03
102	GO:0006833: water transport	8.71E-03
103	GO:0006636: unsaturated fatty acid biosynthetic process	8.71E-03
104	GO:0051017: actin filament bundle assembly	9.37E-03
105	GO:0006289: nucleotide-excision repair	9.37E-03
106	GO:0018105: peptidyl-serine phosphorylation	1.01E-02
107	GO:0006468: protein phosphorylation	1.04E-02
108	GO:0016042: lipid catabolic process	1.05E-02
109	GO:0080092: regulation of pollen tube growth	1.14E-02
110	GO:0001944: vasculature development	1.22E-02
111	GO:0009686: gibberellin biosynthetic process	1.22E-02
112	GO:0008152: metabolic process	1.23E-02
113	GO:0010089: xylem development	1.29E-02
114	GO:0048443: stamen development	1.29E-02
115	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.37E-02
116	GO:0034220: ion transmembrane transport	1.44E-02
117	GO:0010118: stomatal movement	1.44E-02
118	GO:0048653: anther development	1.44E-02
119	GO:0042631: cellular response to water deprivation	1.44E-02
120	GO:0042335: cuticle development	1.44E-02
121	GO:0010197: polar nucleus fusion	1.52E-02
122	GO:0010268: brassinosteroid homeostasis	1.52E-02
123	GO:0009958: positive gravitropism	1.52E-02
124	GO:0006633: fatty acid biosynthetic process	1.55E-02
125	GO:0009646: response to absence of light	1.60E-02
126	GO:0009734: auxin-activated signaling pathway	1.68E-02
127	GO:0007623: circadian rhythm	1.71E-02
128	GO:0016132: brassinosteroid biosynthetic process	1.77E-02
129	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.77E-02
130	GO:0071281: cellular response to iron ion	1.94E-02
131	GO:0016125: sterol metabolic process	2.03E-02
132	GO:0009639: response to red or far red light	2.03E-02
133	GO:0071805: potassium ion transmembrane transport	2.11E-02
134	GO:0009911: positive regulation of flower development	2.30E-02
135	GO:0030244: cellulose biosynthetic process	2.77E-02
136	GO:0000160: phosphorelay signal transduction system	2.87E-02
137	GO:0010311: lateral root formation	2.87E-02
138	GO:0010218: response to far red light	2.97E-02
139	GO:0009723: response to ethylene	3.06E-02
140	GO:0009631: cold acclimation	3.08E-02
141	GO:0048527: lateral root development	3.08E-02
142	GO:0080167: response to karrikin	3.27E-02
143	GO:0030001: metal ion transport	3.60E-02
144	GO:0009926: auxin polar transport	3.93E-02
145	GO:0009744: response to sucrose	3.93E-02
146	GO:0051707: response to other organism	3.93E-02
147	GO:0009640: photomorphogenesis	3.93E-02
148	GO:0007275: multicellular organism development	4.33E-02
149	GO:0042538: hyperosmotic salinity response	4.62E-02
150	GO:0006629: lipid metabolic process	4.81E-02
151	GO:0009737: response to abscisic acid	4.85E-02
152	GO:0006364: rRNA processing	4.86E-02
153	GO:0006813: potassium ion transport	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
2	GO:1990534: thermospermine oxidase activity	0.00E+00
3	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
4	GO:0019808: polyamine binding	0.00E+00
5	GO:0005096: GTPase activator activity	9.79E-07
6	GO:0004674: protein serine/threonine kinase activity	3.05E-05
7	GO:0005524: ATP binding	7.48E-05
8	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	8.20E-05
9	GO:0016301: kinase activity	1.35E-04
10	GO:0015245: fatty acid transporter activity	1.80E-04
11	GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	1.80E-04
12	GO:0051777: ent-kaurenoate oxidase activity	1.80E-04
13	GO:0004856: xylulokinase activity	1.80E-04
14	GO:0008568: microtubule-severing ATPase activity	1.80E-04
15	GO:0003839: gamma-glutamylcyclotransferase activity	4.05E-04
16	GO:0005094: Rho GDP-dissociation inhibitor activity	4.05E-04
17	GO:0004312: fatty acid synthase activity	4.05E-04
18	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	6.61E-04
19	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	6.61E-04
20	GO:0004148: dihydrolipoyl dehydrogenase activity	6.61E-04
21	GO:0009882: blue light photoreceptor activity	9.45E-04
22	GO:0017057: 6-phosphogluconolactonase activity	9.45E-04
23	GO:0001872: (1->3)-beta-D-glucan binding	9.45E-04
24	GO:0003878: ATP citrate synthase activity	9.45E-04
25	GO:0019201: nucleotide kinase activity	9.45E-04
26	GO:0070628: proteasome binding	1.25E-03
27	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.59E-03
28	GO:0017137: Rab GTPase binding	1.59E-03
29	GO:0004518: nuclease activity	1.79E-03
30	GO:0004871: signal transducer activity	1.80E-03
31	GO:0042578: phosphoric ester hydrolase activity	1.96E-03
32	GO:0031593: polyubiquitin binding	1.96E-03
33	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.16E-03
34	GO:0004559: alpha-mannosidase activity	2.35E-03
35	GO:0004017: adenylate kinase activity	2.35E-03
36	GO:0030247: polysaccharide binding	2.84E-03
37	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.93E-03
38	GO:0004337: geranyltranstransferase activity	4.15E-03
39	GO:0005381: iron ion transmembrane transporter activity	4.65E-03
40	GO:0016788: hydrolase activity, acting on ester bonds	5.17E-03
41	GO:0035091: phosphatidylinositol binding	5.54E-03
42	GO:0004161: dimethylallyltranstransferase activity	5.72E-03
43	GO:0005089: Rho guanyl-nucleotide exchange factor activity	5.72E-03
44	GO:0005515: protein binding	5.75E-03
45	GO:0000155: phosphorelay sensor kinase activity	6.86E-03
46	GO:0004565: beta-galactosidase activity	6.86E-03
47	GO:0010329: auxin efflux transmembrane transporter activity	6.86E-03
48	GO:0008081: phosphoric diester hydrolase activity	6.86E-03
49	GO:0003774: motor activity	7.46E-03
50	GO:0008266: poly(U) RNA binding	7.46E-03
51	GO:0008131: primary amine oxidase activity	7.46E-03
52	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.46E-03
53	GO:0052689: carboxylic ester hydrolase activity	7.53E-03
54	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	8.71E-03
55	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	8.71E-03
56	GO:0004672: protein kinase activity	8.71E-03
57	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	8.71E-03
58	GO:0043130: ubiquitin binding	9.37E-03
59	GO:0005528: FK506 binding	9.37E-03
60	GO:0015079: potassium ion transmembrane transporter activity	1.00E-02
61	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.07E-02
62	GO:0004707: MAP kinase activity	1.07E-02
63	GO:0033612: receptor serine/threonine kinase binding	1.07E-02
64	GO:0022891: substrate-specific transmembrane transporter activity	1.22E-02
65	GO:0016829: lyase activity	1.33E-02
66	GO:0010181: FMN binding	1.60E-02
67	GO:0050662: coenzyme binding	1.60E-02
68	GO:0051015: actin filament binding	1.94E-02
69	GO:0003684: damaged DNA binding	2.03E-02
70	GO:0042802: identical protein binding	2.17E-02
71	GO:0015250: water channel activity	2.30E-02
72	GO:0016168: chlorophyll binding	2.39E-02
73	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.48E-02
74	GO:0004683: calmodulin-dependent protein kinase activity	2.58E-02
75	GO:0004222: metalloendopeptidase activity	2.97E-02
76	GO:0050897: cobalt ion binding	3.08E-02
77	GO:0003746: translation elongation factor activity	3.28E-02
78	GO:0005507: copper ion binding	3.49E-02
79	GO:0051537: 2 iron, 2 sulfur cluster binding	4.16E-02
80	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.39E-02
81	GO:0046872: metal ion binding	4.48E-02
82	GO:0005509: calcium ion binding	4.87E-02
83	GO:0016787: hydrolase activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0005886: plasma membrane	4.26E-09
3	GO:0009505: plant-type cell wall	2.06E-05
4	GO:0009897: external side of plasma membrane	6.61E-04
5	GO:0046658: anchored component of plasma membrane	7.33E-04
6	GO:0009531: secondary cell wall	9.45E-04
7	GO:0032432: actin filament bundle	9.45E-04
8	GO:0009346: citrate lyase complex	9.45E-04
9	GO:0009506: plasmodesma	2.71E-03
10	GO:0008180: COP9 signalosome	4.15E-03
11	GO:0016459: myosin complex	5.18E-03
12	GO:0016324: apical plasma membrane	5.18E-03
13	GO:0005884: actin filament	5.72E-03
14	GO:0016602: CCAAT-binding factor complex	6.86E-03
15	GO:0009574: preprophase band	6.86E-03
16	GO:0009570: chloroplast stroma	7.09E-03
17	GO:0009534: chloroplast thylakoid	7.34E-03
18	GO:0030659: cytoplasmic vesicle membrane	7.46E-03
19	GO:0009532: plastid stroma	1.07E-02
20	GO:0010287: plastoglobule	1.17E-02
21	GO:0005770: late endosome	1.52E-02
22	GO:0005759: mitochondrial matrix	1.55E-02
23	GO:0009523: photosystem II	1.68E-02
24	GO:0030529: intracellular ribonucleoprotein complex	2.30E-02
25	GO:0009941: chloroplast envelope	2.43E-02
26	GO:0009507: chloroplast	2.67E-02
27	GO:0019005: SCF ubiquitin ligase complex	2.77E-02
28	GO:0031225: anchored component of membrane	3.91E-02
29	GO:0000502: proteasome complex	4.86E-02