Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G03110

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:1901698: response to nitrogen compound0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:1900000: regulation of anthocyanin catabolic process0.00E+00
6GO:0090706: specification of plant organ position0.00E+00
7GO:1901918: negative regulation of exoribonuclease activity0.00E+00
8GO:0009826: unidimensional cell growth4.83E-05
9GO:0009735: response to cytokinin1.33E-04
10GO:0009644: response to high light intensity1.62E-04
11GO:0042631: cellular response to water deprivation1.82E-04
12GO:0070509: calcium ion import2.48E-04
13GO:0007263: nitric oxide mediated signal transduction2.48E-04
14GO:0043953: protein transport by the Tat complex2.48E-04
15GO:0006723: cuticle hydrocarbon biosynthetic process2.48E-04
16GO:0042547: cell wall modification involved in multidimensional cell growth2.48E-04
17GO:0042371: vitamin K biosynthetic process2.48E-04
18GO:0065002: intracellular protein transmembrane transport2.48E-04
19GO:0034628: 'de novo' NAD biosynthetic process from aspartate2.48E-04
20GO:0010450: inflorescence meristem growth2.48E-04
21GO:0016119: carotene metabolic process2.48E-04
22GO:0000476: maturation of 4.5S rRNA2.48E-04
23GO:0000967: rRNA 5'-end processing2.48E-04
24GO:0009657: plastid organization2.82E-04
25GO:0009051: pentose-phosphate shunt, oxidative branch3.41E-04
26GO:0043085: positive regulation of catalytic activity5.47E-04
27GO:0016560: protein import into peroxisome matrix, docking5.49E-04
28GO:0034755: iron ion transmembrane transport5.49E-04
29GO:0030388: fructose 1,6-bisphosphate metabolic process5.49E-04
30GO:0034470: ncRNA processing5.49E-04
31GO:0006695: cholesterol biosynthetic process5.49E-04
32GO:0015706: nitrate transport6.25E-04
33GO:0015979: photosynthesis6.82E-04
34GO:0009718: anthocyanin-containing compound biosynthetic process7.09E-04
35GO:0006000: fructose metabolic process8.92E-04
36GO:0010167: response to nitrate8.92E-04
37GO:0043447: alkane biosynthetic process8.92E-04
38GO:0006013: mannose metabolic process8.92E-04
39GO:0051176: positive regulation of sulfur metabolic process8.92E-04
40GO:0006696: ergosterol biosynthetic process8.92E-04
41GO:0071705: nitrogen compound transport8.92E-04
42GO:0045165: cell fate commitment8.92E-04
43GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement8.92E-04
44GO:0007623: circadian rhythm9.61E-04
45GO:0010025: wax biosynthetic process9.89E-04
46GO:0001678: cellular glucose homeostasis1.27E-03
47GO:0006515: misfolded or incompletely synthesized protein catabolic process1.27E-03
48GO:1902476: chloride transmembrane transport1.27E-03
49GO:0034059: response to anoxia1.27E-03
50GO:0009800: cinnamic acid biosynthetic process1.27E-03
51GO:2000038: regulation of stomatal complex development1.70E-03
52GO:0006542: glutamine biosynthetic process1.70E-03
53GO:0019676: ammonia assimilation cycle1.70E-03
54GO:0010023: proanthocyanidin biosynthetic process1.70E-03
55GO:0071249: cellular response to nitrate1.70E-03
56GO:0045727: positive regulation of translation1.70E-03
57GO:0015994: chlorophyll metabolic process1.70E-03
58GO:0042335: cuticle development1.99E-03
59GO:0009741: response to brassinosteroid2.15E-03
60GO:0046785: microtubule polymerization2.17E-03
61GO:0006564: L-serine biosynthetic process2.17E-03
62GO:0045038: protein import into chloroplast thylakoid membrane2.17E-03
63GO:0006461: protein complex assembly2.17E-03
64GO:1902183: regulation of shoot apical meristem development2.17E-03
65GO:0016123: xanthophyll biosynthetic process2.17E-03
66GO:0009435: NAD biosynthetic process2.17E-03
67GO:0010158: abaxial cell fate specification2.17E-03
68GO:0032876: negative regulation of DNA endoreduplication2.17E-03
69GO:0030308: negative regulation of cell growth2.17E-03
70GO:0016132: brassinosteroid biosynthetic process2.64E-03
71GO:1902456: regulation of stomatal opening2.67E-03
72GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.67E-03
73GO:0006559: L-phenylalanine catabolic process2.67E-03
74GO:0000741: karyogamy2.67E-03
75GO:0006354: DNA-templated transcription, elongation2.67E-03
76GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.71E-03
77GO:0009742: brassinosteroid mediated signaling pathway2.80E-03
78GO:0009416: response to light stimulus2.92E-03
79GO:0010090: trichome morphogenesis3.01E-03
80GO:0006979: response to oxidative stress3.04E-03
81GO:0046835: carbohydrate phosphorylation3.21E-03
82GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.21E-03
83GO:0006694: steroid biosynthetic process3.21E-03
84GO:0010019: chloroplast-nucleus signaling pathway3.21E-03
85GO:2000037: regulation of stomatal complex patterning3.21E-03
86GO:1900057: positive regulation of leaf senescence3.79E-03
87GO:0009645: response to low light intensity stimulus3.79E-03
88GO:0051510: regulation of unidimensional cell growth3.79E-03
89GO:0050829: defense response to Gram-negative bacterium3.79E-03
90GO:0009610: response to symbiotic fungus3.79E-03
91GO:0030497: fatty acid elongation3.79E-03
92GO:0006821: chloride transport3.79E-03
93GO:0008610: lipid biosynthetic process4.39E-03
94GO:0009850: auxin metabolic process4.39E-03
95GO:0009642: response to light intensity4.39E-03
96GO:0009690: cytokinin metabolic process4.39E-03
97GO:0046620: regulation of organ growth4.39E-03
98GO:0000028: ribosomal small subunit assembly4.39E-03
99GO:0009231: riboflavin biosynthetic process4.39E-03
100GO:0030091: protein repair4.39E-03
101GO:0015995: chlorophyll biosynthetic process4.49E-03
102GO:0018298: protein-chromophore linkage4.97E-03
103GO:0032544: plastid translation5.03E-03
104GO:0009808: lignin metabolic process5.03E-03
105GO:0010093: specification of floral organ identity5.03E-03
106GO:0009699: phenylpropanoid biosynthetic process5.03E-03
107GO:0006002: fructose 6-phosphate metabolic process5.03E-03
108GO:0045490: pectin catabolic process5.21E-03
109GO:0010206: photosystem II repair5.70E-03
110GO:2000024: regulation of leaf development5.70E-03
111GO:0045337: farnesyl diphosphate biosynthetic process5.70E-03
112GO:0033384: geranyl diphosphate biosynthetic process5.70E-03
113GO:0000373: Group II intron splicing5.70E-03
114GO:0009060: aerobic respiration5.70E-03
115GO:0007568: aging5.75E-03
116GO:0005975: carbohydrate metabolic process6.80E-03
117GO:0006949: syncytium formation7.12E-03
118GO:0009299: mRNA transcription7.12E-03
119GO:0009698: phenylpropanoid metabolic process7.88E-03
120GO:0006879: cellular iron ion homeostasis7.88E-03
121GO:0009750: response to fructose7.88E-03
122GO:0016485: protein processing7.88E-03
123GO:0000038: very long-chain fatty acid metabolic process7.88E-03
124GO:0005983: starch catabolic process8.66E-03
125GO:0008361: regulation of cell size8.66E-03
126GO:0006006: glucose metabolic process9.47E-03
127GO:0009725: response to hormone9.47E-03
128GO:0006094: gluconeogenesis9.47E-03
129GO:0009767: photosynthetic electron transport chain9.47E-03
130GO:0005986: sucrose biosynthetic process9.47E-03
131GO:0010143: cutin biosynthetic process1.03E-02
132GO:0010207: photosystem II assembly1.03E-02
133GO:0009933: meristem structural organization1.03E-02
134GO:0009723: response to ethylene1.09E-02
135GO:0010030: positive regulation of seed germination1.12E-02
136GO:0009651: response to salt stress1.20E-02
137GO:0006833: water transport1.21E-02
138GO:0080147: root hair cell development1.30E-02
139GO:0005992: trehalose biosynthetic process1.30E-02
140GO:0006096: glycolytic process1.30E-02
141GO:0009944: polarity specification of adaxial/abaxial axis1.30E-02
142GO:0006418: tRNA aminoacylation for protein translation1.39E-02
143GO:0009768: photosynthesis, light harvesting in photosystem I1.39E-02
144GO:0007017: microtubule-based process1.39E-02
145GO:0009740: gibberellic acid mediated signaling pathway1.47E-02
146GO:0042545: cell wall modification1.52E-02
147GO:0009814: defense response, incompatible interaction1.59E-02
148GO:0016226: iron-sulfur cluster assembly1.59E-02
149GO:0040007: growth1.69E-02
150GO:0009409: response to cold1.69E-02
151GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.69E-02
152GO:0006284: base-excision repair1.79E-02
153GO:0019722: calcium-mediated signaling1.79E-02
154GO:0010214: seed coat development1.79E-02
155GO:0016117: carotenoid biosynthetic process1.90E-02
156GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.90E-02
157GO:0006629: lipid metabolic process1.96E-02
158GO:0042391: regulation of membrane potential2.01E-02
159GO:0034220: ion transmembrane transport2.01E-02
160GO:0010087: phloem or xylem histogenesis2.01E-02
161GO:0010154: fruit development2.12E-02
162GO:0006662: glycerol ether metabolic process2.12E-02
163GO:0010197: polar nucleus fusion2.12E-02
164GO:0009791: post-embryonic development2.34E-02
165GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.46E-02
166GO:0071554: cell wall organization or biogenesis2.46E-02
167GO:0048235: pollen sperm cell differentiation2.58E-02
168GO:0010583: response to cyclopentenone2.58E-02
169GO:0040008: regulation of growth2.59E-02
170GO:0030163: protein catabolic process2.70E-02
171GO:0009828: plant-type cell wall loosening2.82E-02
172GO:0009567: double fertilization forming a zygote and endosperm2.82E-02
173GO:0071805: potassium ion transmembrane transport2.94E-02
174GO:0007267: cell-cell signaling2.94E-02
175GO:0007166: cell surface receptor signaling pathway3.10E-02
176GO:0010027: thylakoid membrane organization3.19E-02
177GO:0016126: sterol biosynthetic process3.19E-02
178GO:0042128: nitrate assimilation3.46E-02
179GO:0007165: signal transduction3.49E-02
180GO:0010411: xyloglucan metabolic process3.59E-02
181GO:0016311: dephosphorylation3.72E-02
182GO:0048481: plant ovule development3.86E-02
183GO:0000160: phosphorelay signal transduction system4.00E-02
184GO:0009834: plant-type secondary cell wall biogenesis4.14E-02
185GO:0009658: chloroplast organization4.19E-02
186GO:0048527: lateral root development4.28E-02
187GO:0034599: cellular response to oxidative stress4.71E-02
RankGO TermAdjusted P value
1GO:0008987: quinolinate synthetase A activity0.00E+00
2GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0046905: phytoene synthase activity0.00E+00
5GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
6GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
7GO:0050614: delta24-sterol reductase activity0.00E+00
8GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
9GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
10GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
11GO:0052638: indole-3-butyrate beta-glucosyltransferase activity2.48E-04
12GO:0080062: cytokinin 9-beta-glucosyltransferase activity2.48E-04
13GO:0009671: nitrate:proton symporter activity2.48E-04
14GO:0051996: squalene synthase activity2.48E-04
15GO:0005221: intracellular cyclic nucleotide activated cation channel activity2.48E-04
16GO:0000248: C-5 sterol desaturase activity2.48E-04
17GO:0046906: tetrapyrrole binding2.48E-04
18GO:0047807: cytokinin 7-beta-glucosyltransferase activity2.48E-04
19GO:0008047: enzyme activator activity4.74E-04
20GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity5.49E-04
21GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.49E-04
22GO:0010291: carotene beta-ring hydroxylase activity5.49E-04
23GO:0047746: chlorophyllase activity5.49E-04
24GO:0043425: bHLH transcription factor binding5.49E-04
25GO:0009977: proton motive force dependent protein transmembrane transporter activity5.49E-04
26GO:0004617: phosphoglycerate dehydrogenase activity5.49E-04
27GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity5.49E-04
28GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.49E-04
29GO:0019843: rRNA binding5.91E-04
30GO:0004565: beta-galactosidase activity7.09E-04
31GO:0050734: hydroxycinnamoyltransferase activity8.92E-04
32GO:0045548: phenylalanine ammonia-lyase activity8.92E-04
33GO:0002161: aminoacyl-tRNA editing activity8.92E-04
34GO:0003935: GTP cyclohydrolase II activity8.92E-04
35GO:0047274: galactinol-sucrose galactosyltransferase activity8.92E-04
36GO:0005528: FK506 binding1.09E-03
37GO:0017057: 6-phosphogluconolactonase activity1.27E-03
38GO:0004176: ATP-dependent peptidase activity1.32E-03
39GO:0005253: anion channel activity1.70E-03
40GO:0005536: glucose binding1.70E-03
41GO:0046556: alpha-L-arabinofuranosidase activity1.70E-03
42GO:0004396: hexokinase activity1.70E-03
43GO:0019158: mannokinase activity1.70E-03
44GO:0004345: glucose-6-phosphate dehydrogenase activity1.70E-03
45GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.70E-03
46GO:0004356: glutamate-ammonia ligase activity2.17E-03
47GO:0008725: DNA-3-methyladenine glycosylase activity2.17E-03
48GO:0009922: fatty acid elongase activity2.17E-03
49GO:0005247: voltage-gated chloride channel activity2.67E-03
50GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.21E-03
51GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.21E-03
52GO:0005261: cation channel activity3.21E-03
53GO:0004559: alpha-mannosidase activity3.21E-03
54GO:0005242: inward rectifier potassium channel activity3.21E-03
55GO:0019899: enzyme binding3.79E-03
56GO:0016168: chlorophyll binding4.03E-03
57GO:0008236: serine-type peptidase activity4.72E-03
58GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.76E-03
59GO:0004337: geranyltranstransferase activity5.70E-03
60GO:0016614: oxidoreductase activity, acting on CH-OH group of donors5.75E-03
61GO:0005381: iron ion transmembrane transporter activity6.40E-03
62GO:0015112: nitrate transmembrane transporter activity6.40E-03
63GO:0004805: trehalose-phosphatase activity7.12E-03
64GO:0004161: dimethylallyltranstransferase activity7.88E-03
65GO:0000049: tRNA binding8.66E-03
66GO:0035091: phosphatidylinositol binding8.79E-03
67GO:0008081: phosphoric diester hydrolase activity9.47E-03
68GO:0005262: calcium channel activity9.47E-03
69GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.49E-03
70GO:0008266: poly(U) RNA binding1.03E-02
71GO:0008146: sulfotransferase activity1.12E-02
72GO:0004190: aspartic-type endopeptidase activity1.12E-02
73GO:0030552: cAMP binding1.12E-02
74GO:0030553: cGMP binding1.12E-02
75GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.21E-02
76GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.21E-02
77GO:0031409: pigment binding1.21E-02
78GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.21E-02
79GO:0045330: aspartyl esterase activity1.22E-02
80GO:0016787: hydrolase activity1.33E-02
81GO:0015079: potassium ion transmembrane transporter activity1.39E-02
82GO:0005216: ion channel activity1.39E-02
83GO:0080043: quercetin 3-O-glucosyltransferase activity1.43E-02
84GO:0080044: quercetin 7-O-glucosyltransferase activity1.43E-02
85GO:0030599: pectinesterase activity1.47E-02
86GO:0030570: pectate lyase activity1.69E-02
87GO:0022891: substrate-specific transmembrane transporter activity1.69E-02
88GO:0003727: single-stranded RNA binding1.79E-02
89GO:0047134: protein-disulfide reductase activity1.90E-02
90GO:0004812: aminoacyl-tRNA ligase activity1.90E-02
91GO:0004672: protein kinase activity1.94E-02
92GO:0030551: cyclic nucleotide binding2.01E-02
93GO:0016829: lyase activity2.13E-02
94GO:0004252: serine-type endopeptidase activity2.18E-02
95GO:0050662: coenzyme binding2.23E-02
96GO:0004791: thioredoxin-disulfide reductase activity2.23E-02
97GO:0016762: xyloglucan:xyloglucosyl transferase activity2.46E-02
98GO:0000156: phosphorelay response regulator activity2.70E-02
99GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.70E-02
100GO:0005200: structural constituent of cytoskeleton2.94E-02
101GO:0008194: UDP-glycosyltransferase activity3.03E-02
102GO:0016597: amino acid binding3.07E-02
103GO:0016413: O-acetyltransferase activity3.07E-02
104GO:0003743: translation initiation factor activity3.17E-02
105GO:0015250: water channel activity3.19E-02
106GO:0042802: identical protein binding3.44E-02
107GO:0016798: hydrolase activity, acting on glycosyl bonds3.59E-02
108GO:0003824: catalytic activity3.65E-02
109GO:0015238: drug transmembrane transporter activity4.00E-02
110GO:0005096: GTPase activator activity4.00E-02
111GO:0050660: flavin adenine dinucleotide binding4.83E-02
RankGO TermAdjusted P value
1GO:0043233: organelle lumen0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0043235: receptor complex0.00E+00
4GO:0009507: chloroplast5.30E-10
5GO:0009570: chloroplast stroma2.75E-09
6GO:0009535: chloroplast thylakoid membrane2.13E-08
7GO:0009534: chloroplast thylakoid8.02E-08
8GO:0009543: chloroplast thylakoid lumen3.88E-07
9GO:0009941: chloroplast envelope2.17E-06
10GO:0009579: thylakoid4.98E-05
11GO:0009505: plant-type cell wall1.03E-04
12GO:0009533: chloroplast stromal thylakoid1.80E-04
13GO:0000428: DNA-directed RNA polymerase complex2.48E-04
14GO:0009344: nitrite reductase complex [NAD(P)H]2.48E-04
15GO:0009547: plastid ribosome2.48E-04
16GO:0031361: integral component of thylakoid membrane2.48E-04
17GO:0009782: photosystem I antenna complex2.48E-04
18GO:0031969: chloroplast membrane5.39E-04
19GO:0010287: plastoglobule5.44E-04
20GO:0080085: signal recognition particle, chloroplast targeting5.49E-04
21GO:0000312: plastid small ribosomal subunit7.98E-04
22GO:0030095: chloroplast photosystem II7.98E-04
23GO:0033281: TAT protein transport complex8.92E-04
24GO:0005782: peroxisomal matrix8.92E-04
25GO:0009654: photosystem II oxygen evolving complex1.20E-03
26GO:0030660: Golgi-associated vesicle membrane1.70E-03
27GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane1.70E-03
28GO:0048046: apoplast1.95E-03
29GO:0009523: photosystem II2.47E-03
30GO:0019898: extrinsic component of membrane2.47E-03
31GO:0034707: chloride channel complex2.67E-03
32GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane4.39E-03
33GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.03E-03
34GO:0008180: COP9 signalosome5.70E-03
35GO:0045298: tubulin complex5.70E-03
36GO:0055028: cortical microtubule7.12E-03
37GO:0016020: membrane7.48E-03
38GO:0031977: thylakoid lumen7.49E-03
39GO:0005765: lysosomal membrane7.88E-03
40GO:0031307: integral component of mitochondrial outer membrane8.66E-03
41GO:0005578: proteinaceous extracellular matrix9.47E-03
42GO:0030076: light-harvesting complex1.12E-02
43GO:0005623: cell2.02E-02
44GO:0043231: intracellular membrane-bounded organelle2.22E-02
45GO:0005886: plasma membrane2.60E-02
46GO:0005576: extracellular region2.61E-02
47GO:0071944: cell periphery2.70E-02
48GO:0009295: nucleoid2.94E-02
49GO:0005773: vacuole3.10E-02
50GO:0030529: intracellular ribonucleoprotein complex3.19E-02
51GO:0022627: cytosolic small ribosomal subunit3.59E-02
52GO:0019005: SCF ubiquitin ligase complex3.86E-02
53GO:0005618: cell wall4.19E-02
54GO:0015934: large ribosomal subunit4.28E-02
55GO:0016021: integral component of membrane4.65E-02
56GO:0009506: plasmodesma4.66E-02
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Gene type



Gene DE type