co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G02930

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
2	GO:0019307: mannose biosynthetic process	0.00E+00
3	GO:0072321: chaperone-mediated protein transport	0.00E+00
4	GO:0071433: cell wall repair	0.00E+00
5	GO:0000494: box C/D snoRNA 3'-end processing	0.00E+00
6	GO:0080056: petal vascular tissue pattern formation	0.00E+00
7	GO:1904874: positive regulation of telomerase RNA localization to Cajal body	0.00E+00
8	GO:0045047: protein targeting to ER	0.00E+00
9	GO:0071731: response to nitric oxide	0.00E+00
10	GO:0039694: viral RNA genome replication	0.00E+00
11	GO:0031564: transcription antitermination	0.00E+00
12	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
13	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
14	GO:1990258: histone glutamine methylation	0.00E+00
15	GO:0042254: ribosome biogenesis	9.16E-11
16	GO:0006412: translation	9.93E-08
17	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.49E-07
18	GO:0006364: rRNA processing	9.19E-07
19	GO:0031167: rRNA methylation	1.55E-05
20	GO:0046686: response to cadmium ion	1.94E-05
21	GO:0006458: 'de novo' protein folding	3.34E-05
22	GO:0009651: response to salt stress	4.02E-05
23	GO:0001510: RNA methylation	7.46E-05
24	GO:0006457: protein folding	8.54E-05
25	GO:0006189: 'de novo' IMP biosynthetic process	9.24E-05
26	GO:0031118: rRNA pseudouridine synthesis	1.02E-04
27	GO:0051775: response to redox state	1.02E-04
28	GO:0031120: snRNA pseudouridine synthesis	1.02E-04
29	GO:0045041: protein import into mitochondrial intermembrane space	2.40E-04
30	GO:0015865: purine nucleotide transport	2.40E-04
31	GO:0045039: protein import into mitochondrial inner membrane	3.99E-04
32	GO:0006013: mannose metabolic process	3.99E-04
33	GO:0055074: calcium ion homeostasis	3.99E-04
34	GO:1902626: assembly of large subunit precursor of preribosome	3.99E-04
35	GO:0006334: nucleosome assembly	4.03E-04
36	GO:0061077: chaperone-mediated protein folding	4.03E-04
37	GO:0007005: mitochondrion organization	4.41E-04
38	GO:0006986: response to unfolded protein	5.73E-04
39	GO:0007004: telomere maintenance via telomerase	5.73E-04
40	GO:0009298: GDP-mannose biosynthetic process	5.73E-04
41	GO:0070301: cellular response to hydrogen peroxide	5.73E-04
42	GO:0051085: chaperone mediated protein folding requiring cofactor	5.73E-04
43	GO:0006241: CTP biosynthetic process	5.73E-04
44	GO:0046902: regulation of mitochondrial membrane permeability	5.73E-04
45	GO:0007276: gamete generation	5.73E-04
46	GO:0006165: nucleoside diphosphate phosphorylation	5.73E-04
47	GO:0006228: UTP biosynthetic process	5.73E-04
48	GO:0006164: purine nucleotide biosynthetic process	5.73E-04
49	GO:0051131: chaperone-mediated protein complex assembly	5.73E-04
50	GO:0009113: purine nucleobase biosynthetic process	5.73E-04
51	GO:0008033: tRNA processing	6.09E-04
52	GO:0010501: RNA secondary structure unwinding	6.09E-04
53	GO:0009408: response to heat	7.13E-04
54	GO:0006183: GTP biosynthetic process	7.62E-04
55	GO:0000460: maturation of 5.8S rRNA	7.62E-04
56	GO:0006564: L-serine biosynthetic process	9.62E-04
57	GO:0000470: maturation of LSU-rRNA	1.17E-03
58	GO:0016444: somatic cell DNA recombination	1.40E-03
59	GO:0042026: protein refolding	1.40E-03
60	GO:0009423: chorismate biosynthetic process	1.40E-03
61	GO:0009396: folic acid-containing compound biosynthetic process	1.65E-03
62	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	1.65E-03
63	GO:0000028: ribosomal small subunit assembly	1.90E-03
64	GO:0042255: ribosome assembly	1.90E-03
65	GO:0001522: pseudouridine synthesis	1.90E-03
66	GO:0006605: protein targeting	1.90E-03
67	GO:0009744: response to sucrose	2.38E-03
68	GO:0098656: anion transmembrane transport	2.45E-03
69	GO:0035999: tetrahydrofolate interconversion	2.74E-03
70	GO:0010162: seed dormancy process	3.05E-03
71	GO:0009073: aromatic amino acid family biosynthetic process	3.36E-03
72	GO:0006820: anion transport	3.69E-03
73	GO:0006094: gluconeogenesis	4.02E-03
74	GO:0010588: cotyledon vascular tissue pattern formation	4.02E-03
75	GO:0006626: protein targeting to mitochondrion	4.02E-03
76	GO:0048467: gynoecium development	4.37E-03
77	GO:0006541: glutamine metabolic process	4.37E-03
78	GO:0019853: L-ascorbic acid biosynthetic process	4.72E-03
79	GO:0009793: embryo development ending in seed dormancy	4.89E-03
80	GO:0034976: response to endoplasmic reticulum stress	5.09E-03
81	GO:0006487: protein N-linked glycosylation	5.46E-03
82	GO:0000027: ribosomal large subunit assembly	5.46E-03
83	GO:0030150: protein import into mitochondrial matrix	5.46E-03
84	GO:0009944: polarity specification of adaxial/abaxial axis	5.46E-03
85	GO:0051302: regulation of cell division	5.85E-03
86	GO:0009294: DNA mediated transformation	7.06E-03
87	GO:0006413: translational initiation	7.28E-03
88	GO:0009561: megagametogenesis	7.48E-03
89	GO:0000413: protein peptidyl-prolyl isomerization	8.35E-03
90	GO:0010197: polar nucleus fusion	8.80E-03
91	GO:0010154: fruit development	8.80E-03
92	GO:0010305: leaf vascular tissue pattern formation	8.80E-03
93	GO:0015986: ATP synthesis coupled proton transport	9.26E-03
94	GO:0006635: fatty acid beta-oxidation	1.02E-02
95	GO:0010286: heat acclimation	1.22E-02
96	GO:0016049: cell growth	1.54E-02
97	GO:0010311: lateral root formation	1.65E-02
98	GO:0009631: cold acclimation	1.77E-02
99	GO:0048527: lateral root development	1.77E-02
100	GO:0000724: double-strand break repair via homologous recombination	1.83E-02
101	GO:0009853: photorespiration	1.89E-02
102	GO:0006839: mitochondrial transport	2.07E-02
103	GO:0042542: response to hydrogen peroxide	2.20E-02
104	GO:0008283: cell proliferation	2.26E-02
105	GO:0048364: root development	2.32E-02
106	GO:0000154: rRNA modification	2.46E-02
107	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.59E-02
108	GO:0009846: pollen germination	2.66E-02
109	GO:0006096: glycolytic process	3.15E-02
110	GO:0048367: shoot system development	3.22E-02
111	GO:0048316: seed development	3.22E-02
112	GO:0009555: pollen development	3.93E-02
113	GO:0009845: seed germination	4.46E-02
114	GO:0009790: embryo development	4.70E-02
115	GO:0006633: fatty acid biosynthetic process	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0003922: GMP synthase (glutamine-hydrolyzing) activity	0.00E+00
2	GO:1990259: histone-glutamine methyltransferase activity	0.00E+00
3	GO:0016018: cyclosporin A binding	0.00E+00
4	GO:0004615: phosphomannomutase activity	0.00E+00
5	GO:0004637: phosphoribosylamine-glycine ligase activity	0.00E+00
6	GO:0034513: box H/ACA snoRNA binding	0.00E+00
7	GO:0004107: chorismate synthase activity	0.00E+00
8	GO:0004316: 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity	0.00E+00
9	GO:0001072: transcription antitermination factor activity, RNA binding	0.00E+00
10	GO:0102132: 3-oxo-pimeloyl-[acp] methyl ester reductase activity	0.00E+00
11	GO:0030515: snoRNA binding	3.81E-12
12	GO:0003735: structural constituent of ribosome	3.46E-10
13	GO:0051082: unfolded protein binding	7.57E-08
14	GO:0005507: copper ion binding	7.83E-08
15	GO:0003723: RNA binding	1.26E-07
16	GO:0043021: ribonucleoprotein complex binding	5.49E-07
17	GO:0008649: rRNA methyltransferase activity	2.08E-06
18	GO:0042134: rRNA primary transcript binding	1.02E-04
19	GO:0004638: phosphoribosylaminoimidazole carboxylase activity	1.02E-04
20	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.02E-04
21	GO:0044183: protein binding involved in protein folding	1.56E-04
22	GO:0003746: translation elongation factor activity	1.67E-04
23	GO:0004617: phosphoglycerate dehydrogenase activity	2.40E-04
24	GO:0070034: telomerase RNA binding	2.40E-04
25	GO:0000774: adenyl-nucleotide exchange factor activity	2.40E-04
26	GO:0051287: NAD binding	3.07E-04
27	GO:0051087: chaperone binding	3.67E-04
28	GO:0070180: large ribosomal subunit rRNA binding	3.99E-04
29	GO:0004550: nucleoside diphosphate kinase activity	5.73E-04
30	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	5.73E-04
31	GO:0008026: ATP-dependent helicase activity	5.97E-04
32	GO:0005471: ATP:ADP antiporter activity	9.62E-04
33	GO:0031369: translation initiation factor binding	1.17E-03
34	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	1.17E-03
35	GO:0016462: pyrophosphatase activity	1.17E-03
36	GO:0004004: ATP-dependent RNA helicase activity	1.33E-03
37	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.65E-03
38	GO:0015288: porin activity	1.90E-03
39	GO:0042393: histone binding	2.11E-03
40	GO:0008135: translation factor activity, RNA binding	2.17E-03
41	GO:0008308: voltage-gated anion channel activity	2.17E-03
42	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.77E-03
43	GO:0015114: phosphate ion transmembrane transporter activity	4.02E-03
44	GO:0008266: poly(U) RNA binding	4.37E-03
45	GO:0004407: histone deacetylase activity	5.46E-03
46	GO:0005528: FK506 binding	5.46E-03
47	GO:0003756: protein disulfide isomerase activity	7.48E-03
48	GO:0000166: nucleotide binding	8.38E-03
49	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	8.80E-03
50	GO:0003729: mRNA binding	8.97E-03
51	GO:0003743: translation initiation factor activity	9.12E-03
52	GO:0010181: FMN binding	9.26E-03
53	GO:0005524: ATP binding	1.19E-02
54	GO:0016597: amino acid binding	1.27E-02
55	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.60E-02
56	GO:0003697: single-stranded DNA binding	1.89E-02
57	GO:0050661: NADP binding	2.07E-02
58	GO:0003690: double-stranded DNA binding	2.86E-02
59	GO:0004386: helicase activity	3.82E-02
60	GO:0019843: rRNA binding	4.22E-02
61	GO:0008565: protein transporter activity	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0090661: box H/ACA telomerase RNP complex	0.00E+00
2	GO:0019034: viral replication complex	0.00E+00
3	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
4	GO:0072589: box H/ACA scaRNP complex	0.00E+00
5	GO:0005832: chaperonin-containing T-complex	0.00E+00
6	GO:0034457: Mpp10 complex	0.00E+00
7	GO:0005730: nucleolus	3.54E-21
8	GO:0005739: mitochondrion	2.25E-10
9	GO:0005774: vacuolar membrane	8.32E-10
10	GO:0015030: Cajal body	1.11E-08
11	GO:0032040: small-subunit processome	3.34E-08
12	GO:0031428: box C/D snoRNP complex	1.23E-07
13	GO:0005840: ribosome	4.31E-07
14	GO:0070545: PeBoW complex	5.49E-07
15	GO:0005759: mitochondrial matrix	7.47E-06
16	GO:0005747: mitochondrial respiratory chain complex I	3.64E-05
17	GO:0030687: preribosome, large subunit precursor	4.52E-05
18	GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m	1.02E-04
19	GO:0001405: presequence translocase-associated import motor	1.02E-04
20	GO:0005829: cytosol	1.10E-04
21	GO:0005740: mitochondrial envelope	1.33E-04
22	GO:0005773: vacuole	1.78E-04
23	GO:0009536: plastid	3.72E-04
24	GO:0022625: cytosolic large ribosomal subunit	4.24E-04
25	GO:0031429: box H/ACA snoRNP complex	5.73E-04
26	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	7.62E-04
27	GO:0005788: endoplasmic reticulum lumen	1.20E-03
28	GO:0016363: nuclear matrix	1.40E-03
29	GO:0005762: mitochondrial large ribosomal subunit	1.40E-03
30	GO:0009507: chloroplast	1.50E-03
31	GO:0022627: cytosolic small ribosomal subunit	1.55E-03
32	GO:0046930: pore complex	2.17E-03
33	GO:0005763: mitochondrial small ribosomal subunit	2.45E-03
34	GO:0005852: eukaryotic translation initiation factor 3 complex	3.36E-03
35	GO:0005743: mitochondrial inner membrane	3.69E-03
36	GO:0005618: cell wall	3.81E-03
37	GO:0005834: heterotrimeric G-protein complex	4.01E-03
38	GO:0019013: viral nucleocapsid	4.02E-03
39	GO:0005750: mitochondrial respiratory chain complex III	4.37E-03
40	GO:0005753: mitochondrial proton-transporting ATP synthase complex	4.72E-03
41	GO:0043234: protein complex	5.09E-03
42	GO:0009941: chloroplast envelope	5.32E-03
43	GO:0005758: mitochondrial intermembrane space	5.46E-03
44	GO:0009506: plasmodesma	5.69E-03
45	GO:0005741: mitochondrial outer membrane	6.24E-03
46	GO:0022626: cytosolic ribosome	7.92E-03
47	GO:0016592: mediator complex	1.07E-02
48	GO:0015934: large ribosomal subunit	1.77E-02
49	GO:0000502: proteasome complex	2.80E-02
50	GO:0009570: chloroplast stroma	2.93E-02
51	GO:0016020: membrane	3.05E-02
52	GO:0005732: small nucleolar ribonucleoprotein complex	3.82E-02
53	GO:0005654: nucleoplasm	4.14E-02
54	GO:0005623: cell	4.30E-02