co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G02920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0061635: regulation of protein complex stability	0.00E+00
4	GO:0090042: tubulin deacetylation	0.00E+00
5	GO:0009773: photosynthetic electron transport in photosystem I	5.91E-11
6	GO:0015979: photosynthesis	1.47E-08
7	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.53E-06
8	GO:0034755: iron ion transmembrane transport	3.53E-06
9	GO:0071482: cellular response to light stimulus	9.37E-06
10	GO:0006000: fructose metabolic process	1.27E-05
11	GO:0010206: photosystem II repair	1.30E-05
12	GO:0006094: gluconeogenesis	4.57E-05
13	GO:0015994: chlorophyll metabolic process	5.13E-05
14	GO:0006546: glycine catabolic process	5.13E-05
15	GO:0010196: nonphotochemical quenching	2.13E-04
16	GO:0006810: transport	2.73E-04
17	GO:1902458: positive regulation of stomatal opening	2.77E-04
18	GO:0010028: xanthophyll cycle	2.77E-04
19	GO:0034337: RNA folding	2.77E-04
20	GO:0071588: hydrogen peroxide mediated signaling pathway	2.77E-04
21	GO:0019646: aerobic electron transport chain	2.77E-04
22	GO:0000476: maturation of 4.5S rRNA	2.77E-04
23	GO:0000967: rRNA 5'-end processing	2.77E-04
24	GO:0006824: cobalt ion transport	2.77E-04
25	GO:0043266: regulation of potassium ion transport	2.77E-04
26	GO:0010480: microsporocyte differentiation	2.77E-04
27	GO:0000481: maturation of 5S rRNA	2.77E-04
28	GO:0071461: cellular response to redox state	2.77E-04
29	GO:2000021: regulation of ion homeostasis	2.77E-04
30	GO:0006002: fructose 6-phosphate metabolic process	3.32E-04
31	GO:0009657: plastid organization	3.32E-04
32	GO:0032544: plastid translation	3.32E-04
33	GO:0016122: xanthophyll metabolic process	6.09E-04
34	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.09E-04
35	GO:0010270: photosystem II oxygen evolving complex assembly	6.09E-04
36	GO:0034470: ncRNA processing	6.09E-04
37	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.09E-04
38	GO:0080005: photosystem stoichiometry adjustment	6.09E-04
39	GO:1900871: chloroplast mRNA modification	6.09E-04
40	GO:0015995: chlorophyll biosynthetic process	6.66E-04
41	GO:0009409: response to cold	7.52E-04
42	GO:0055114: oxidation-reduction process	7.96E-04
43	GO:0009767: photosynthetic electron transport chain	8.26E-04
44	GO:0005986: sucrose biosynthetic process	8.26E-04
45	GO:0009735: response to cytokinin	8.58E-04
46	GO:0010207: photosystem II assembly	9.28E-04
47	GO:0019253: reductive pentose-phosphate cycle	9.28E-04
48	GO:0006518: peptide metabolic process	9.88E-04
49	GO:0006636: unsaturated fatty acid biosynthetic process	1.15E-03
50	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.41E-03
51	GO:0051513: regulation of monopolar cell growth	1.41E-03
52	GO:0009152: purine ribonucleotide biosynthetic process	1.41E-03
53	GO:0046653: tetrahydrofolate metabolic process	1.41E-03
54	GO:0016556: mRNA modification	1.41E-03
55	GO:2001141: regulation of RNA biosynthetic process	1.41E-03
56	GO:0046836: glycolipid transport	1.41E-03
57	GO:0015976: carbon utilization	1.89E-03
58	GO:0019464: glycine decarboxylation via glycine cleavage system	1.89E-03
59	GO:0045727: positive regulation of translation	1.89E-03
60	GO:2000122: negative regulation of stomatal complex development	1.89E-03
61	GO:0010037: response to carbon dioxide	1.89E-03
62	GO:0006461: protein complex assembly	2.41E-03
63	GO:0016120: carotene biosynthetic process	2.41E-03
64	GO:0006564: L-serine biosynthetic process	2.41E-03
65	GO:0045038: protein import into chloroplast thylakoid membrane	2.41E-03
66	GO:0010405: arabinogalactan protein metabolic process	2.98E-03
67	GO:0042549: photosystem II stabilization	2.98E-03
68	GO:0006828: manganese ion transport	2.98E-03
69	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.98E-03
70	GO:0000741: karyogamy	2.98E-03
71	GO:0042372: phylloquinone biosynthetic process	3.58E-03
72	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.58E-03
73	GO:0009854: oxidative photosynthetic carbon pathway	3.58E-03
74	GO:0010019: chloroplast-nucleus signaling pathway	3.58E-03
75	GO:0009772: photosynthetic electron transport in photosystem II	4.23E-03
76	GO:0048437: floral organ development	4.23E-03
77	GO:0010439: regulation of glucosinolate biosynthetic process	4.90E-03
78	GO:0030091: protein repair	4.90E-03
79	GO:0009850: auxin metabolic process	4.90E-03
80	GO:0032508: DNA duplex unwinding	4.90E-03
81	GO:2000070: regulation of response to water deprivation	4.90E-03
82	GO:0010492: maintenance of shoot apical meristem identity	4.90E-03
83	GO:0042128: nitrate assimilation	4.99E-03
84	GO:0017004: cytochrome complex assembly	5.62E-03
85	GO:0018298: protein-chromophore linkage	5.83E-03
86	GO:0009051: pentose-phosphate shunt, oxidative branch	6.37E-03
87	GO:0006098: pentose-phosphate shunt	6.37E-03
88	GO:0009821: alkaloid biosynthetic process	6.37E-03
89	GO:0048507: meristem development	6.37E-03
90	GO:0007623: circadian rhythm	6.39E-03
91	GO:0010205: photoinhibition	7.15E-03
92	GO:0009853: photorespiration	7.40E-03
93	GO:0009870: defense response signaling pathway, resistance gene-dependent	7.97E-03
94	GO:0006816: calcium ion transport	8.82E-03
95	GO:0009698: phenylpropanoid metabolic process	8.82E-03
96	GO:0019684: photosynthesis, light reaction	8.82E-03
97	GO:0009089: lysine biosynthetic process via diaminopimelate	8.82E-03
98	GO:0006879: cellular iron ion homeostasis	8.82E-03
99	GO:0006352: DNA-templated transcription, initiation	8.82E-03
100	GO:0009750: response to fructose	8.82E-03
101	GO:0018119: peptidyl-cysteine S-nitrosylation	8.82E-03
102	GO:0016485: protein processing	8.82E-03
103	GO:0048229: gametophyte development	8.82E-03
104	GO:0010114: response to red light	9.55E-03
105	GO:0005983: starch catabolic process	9.70E-03
106	GO:0018107: peptidyl-threonine phosphorylation	1.06E-02
107	GO:0009718: anthocyanin-containing compound biosynthetic process	1.06E-02
108	GO:0010075: regulation of meristem growth	1.06E-02
109	GO:0030048: actin filament-based movement	1.06E-02
110	GO:0010628: positive regulation of gene expression	1.06E-02
111	GO:0006006: glucose metabolic process	1.06E-02
112	GO:0009934: regulation of meristem structural organization	1.16E-02
113	GO:0010143: cutin biosynthetic process	1.16E-02
114	GO:0005985: sucrose metabolic process	1.25E-02
115	GO:0006364: rRNA processing	1.29E-02
116	GO:0006096: glycolytic process	1.53E-02
117	GO:0016575: histone deacetylation	1.56E-02
118	GO:0009768: photosynthesis, light harvesting in photosystem I	1.56E-02
119	GO:0061077: chaperone-mediated protein folding	1.67E-02
120	GO:0016226: iron-sulfur cluster assembly	1.78E-02
121	GO:0071369: cellular response to ethylene stimulus	1.89E-02
122	GO:0009306: protein secretion	2.01E-02
123	GO:0048653: anther development	2.25E-02
124	GO:0042631: cellular response to water deprivation	2.25E-02
125	GO:0000413: protein peptidyl-prolyl isomerization	2.25E-02
126	GO:0032259: methylation	2.27E-02
127	GO:0010197: polar nucleus fusion	2.37E-02
128	GO:0009058: biosynthetic process	2.43E-02
129	GO:0042744: hydrogen peroxide catabolic process	2.63E-02
130	GO:0008152: metabolic process	2.71E-02
131	GO:0000302: response to reactive oxygen species	2.76E-02
132	GO:0046686: response to cadmium ion	2.81E-02
133	GO:0019761: glucosinolate biosynthetic process	2.89E-02
134	GO:0006633: fatty acid biosynthetic process	2.90E-02
135	GO:1901657: glycosyl compound metabolic process	3.02E-02
136	GO:0030163: protein catabolic process	3.02E-02
137	GO:0006508: proteolysis	3.54E-02
138	GO:0001666: response to hypoxia	3.58E-02
139	GO:0006979: response to oxidative stress	4.07E-02
140	GO:0016311: dephosphorylation	4.17E-02
141	GO:0009817: defense response to fungus, incompatible interaction	4.33E-02
142	GO:0000160: phosphorelay signal transduction system	4.48E-02
143	GO:0010218: response to far red light	4.64E-02
144	GO:0010119: regulation of stomatal movement	4.79E-02
145	GO:0009631: cold acclimation	4.79E-02
146	GO:0009658: chloroplast organization	4.90E-02
147	GO:0006865: amino acid transport	4.95E-02
148	GO:0042254: ribosome biogenesis	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
4	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
5	GO:0051721: protein phosphatase 2A binding	0.00E+00
6	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
7	GO:0042903: tubulin deacetylase activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
10	GO:0043014: alpha-tubulin binding	0.00E+00
11	GO:0008465: glycerate dehydrogenase activity	0.00E+00
12	GO:0005528: FK506 binding	8.36E-10
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.03E-08
14	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.53E-06
15	GO:0019843: rRNA binding	1.11E-04
16	GO:0009496: plastoquinol--plastocyanin reductase activity	2.77E-04
17	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	2.77E-04
18	GO:0045485: omega-6 fatty acid desaturase activity	2.77E-04
19	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.77E-04
20	GO:0005381: iron ion transmembrane transporter activity	4.74E-04
21	GO:0047746: chlorophyllase activity	6.09E-04
22	GO:0042389: omega-3 fatty acid desaturase activity	6.09E-04
23	GO:0016868: intramolecular transferase activity, phosphotransferases	6.09E-04
24	GO:0004618: phosphoglycerate kinase activity	6.09E-04
25	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.09E-04
26	GO:0004617: phosphoglycerate dehydrogenase activity	6.09E-04
27	GO:0004047: aminomethyltransferase activity	6.09E-04
28	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.09E-04
29	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.09E-04
30	GO:0004222: metalloendopeptidase activity	8.56E-04
31	GO:0008266: poly(U) RNA binding	9.28E-04
32	GO:0008864: formyltetrahydrofolate deformylase activity	9.88E-04
33	GO:0050734: hydroxycinnamoyltransferase activity	9.88E-04
34	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	9.88E-04
35	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	9.88E-04
36	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.88E-04
37	GO:0017089: glycolipid transporter activity	1.41E-03
38	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.41E-03
39	GO:0019201: nucleotide kinase activity	1.41E-03
40	GO:0016851: magnesium chelatase activity	1.41E-03
41	GO:0048487: beta-tubulin binding	1.41E-03
42	GO:0051537: 2 iron, 2 sulfur cluster binding	1.54E-03
43	GO:0001053: plastid sigma factor activity	1.89E-03
44	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.89E-03
45	GO:0051861: glycolipid binding	1.89E-03
46	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.89E-03
47	GO:0016987: sigma factor activity	1.89E-03
48	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.98E-03
49	GO:0004332: fructose-bisphosphate aldolase activity	2.98E-03
50	GO:0004130: cytochrome-c peroxidase activity	2.98E-03
51	GO:0016688: L-ascorbate peroxidase activity	2.98E-03
52	GO:0048038: quinone binding	3.09E-03
53	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.58E-03
54	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.58E-03
55	GO:0004017: adenylate kinase activity	3.58E-03
56	GO:0016168: chlorophyll binding	4.73E-03
57	GO:0004033: aldo-keto reductase (NADP) activity	4.90E-03
58	GO:0008236: serine-type peptidase activity	5.55E-03
59	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.62E-03
60	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.62E-03
61	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	6.37E-03
62	GO:0016844: strictosidine synthase activity	7.15E-03
63	GO:0005384: manganese ion transmembrane transporter activity	7.15E-03
64	GO:0043621: protein self-association	1.03E-02
65	GO:0004089: carbonate dehydratase activity	1.06E-02
66	GO:0015095: magnesium ion transmembrane transporter activity	1.06E-02
67	GO:0031072: heat shock protein binding	1.06E-02
68	GO:0004022: alcohol dehydrogenase (NAD) activity	1.06E-02
69	GO:0051287: NAD binding	1.16E-02
70	GO:0003774: motor activity	1.16E-02
71	GO:0046872: metal ion binding	1.24E-02
72	GO:0031409: pigment binding	1.35E-02
73	GO:0051536: iron-sulfur cluster binding	1.46E-02
74	GO:0003954: NADH dehydrogenase activity	1.46E-02
75	GO:0004407: histone deacetylase activity	1.46E-02
76	GO:0043424: protein histidine kinase binding	1.56E-02
77	GO:0003735: structural constituent of ribosome	1.57E-02
78	GO:0004176: ATP-dependent peptidase activity	1.67E-02
79	GO:0033612: receptor serine/threonine kinase binding	1.67E-02
80	GO:0016787: hydrolase activity	1.81E-02
81	GO:0022891: substrate-specific transmembrane transporter activity	1.89E-02
82	GO:0030570: pectate lyase activity	1.89E-02
83	GO:0003756: protein disulfide isomerase activity	2.01E-02
84	GO:0003727: single-stranded RNA binding	2.01E-02
85	GO:0016491: oxidoreductase activity	2.12E-02
86	GO:0016758: transferase activity, transferring hexosyl groups	2.25E-02
87	GO:0050662: coenzyme binding	2.50E-02
88	GO:0004252: serine-type endopeptidase activity	2.56E-02
89	GO:0000156: phosphorelay response regulator activity	3.02E-02
90	GO:0008483: transaminase activity	3.30E-02
91	GO:0016597: amino acid binding	3.44E-02
92	GO:0005509: calcium ion binding	3.58E-02
93	GO:0051213: dioxygenase activity	3.58E-02
94	GO:0003743: translation initiation factor activity	3.72E-02
95	GO:0102483: scopolin beta-glucosidase activity	4.02E-02
96	GO:0015238: drug transmembrane transporter activity	4.48E-02
97	GO:0003824: catalytic activity	4.60E-02
98	GO:0005215: transporter activity	4.65E-02
99	GO:0008168: methyltransferase activity	4.72E-02
100	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.79E-02
101	GO:0016788: hydrolase activity, acting on ester bonds	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009507: chloroplast	1.22E-55
3	GO:0009535: chloroplast thylakoid membrane	1.39E-31
4	GO:0009534: chloroplast thylakoid	1.21E-30
5	GO:0009941: chloroplast envelope	6.10E-24
6	GO:0009570: chloroplast stroma	9.43E-22
7	GO:0009543: chloroplast thylakoid lumen	1.81E-15
8	GO:0009579: thylakoid	3.13E-14
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.48E-09
10	GO:0031977: thylakoid lumen	2.10E-08
11	GO:0030095: chloroplast photosystem II	1.43E-06
12	GO:0009533: chloroplast stromal thylakoid	4.27E-06
13	GO:0009706: chloroplast inner membrane	5.47E-06
14	GO:0009654: photosystem II oxygen evolving complex	1.08E-04
15	GO:0009344: nitrite reductase complex [NAD(P)H]	2.77E-04
16	GO:0019898: extrinsic component of membrane	3.05E-04
17	GO:0009523: photosystem II	3.05E-04
18	GO:0031304: intrinsic component of mitochondrial inner membrane	6.09E-04
19	GO:0042170: plastid membrane	6.09E-04
20	GO:0010287: plastoglobule	6.94E-04
21	GO:0031969: chloroplast membrane	7.16E-04
22	GO:0000312: plastid small ribosomal subunit	9.28E-04
23	GO:0010007: magnesium chelatase complex	9.88E-04
24	GO:0033281: TAT protein transport complex	9.88E-04
25	GO:0005960: glycine cleavage complex	1.41E-03
26	GO:0009512: cytochrome b6f complex	2.41E-03
27	GO:0009522: photosystem I	2.70E-03
28	GO:0016021: integral component of membrane	2.75E-03
29	GO:0010319: stromule	3.98E-03
30	GO:0005763: mitochondrial small ribosomal subunit	6.37E-03
31	GO:0048046: apoplast	7.83E-03
32	GO:0016459: myosin complex	7.97E-03
33	GO:0055028: cortical microtubule	7.97E-03
34	GO:0032040: small-subunit processome	9.70E-03
35	GO:0030076: light-harvesting complex	1.25E-02
36	GO:0042651: thylakoid membrane	1.56E-02
37	GO:0005840: ribosome	4.30E-02
38	GO:0015934: large ribosomal subunit	4.79E-02