Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G02130

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006642: triglyceride mobilization0.00E+00
2GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
3GO:1905499: trichome papilla formation0.00E+00
4GO:0006399: tRNA metabolic process0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.53E-05
7GO:0006633: fatty acid biosynthetic process7.85E-05
8GO:0042335: cuticle development1.31E-04
9GO:0046166: glyceraldehyde-3-phosphate biosynthetic process2.11E-04
10GO:0043007: maintenance of rDNA2.11E-04
11GO:0060627: regulation of vesicle-mediated transport2.11E-04
12GO:0010115: regulation of abscisic acid biosynthetic process4.71E-04
13GO:0060919: auxin influx4.71E-04
14GO:0045717: negative regulation of fatty acid biosynthetic process4.71E-04
15GO:0071258: cellular response to gravity4.71E-04
16GO:0010289: homogalacturonan biosynthetic process4.71E-04
17GO:0010198: synergid death4.71E-04
18GO:0006695: cholesterol biosynthetic process4.71E-04
19GO:0019563: glycerol catabolic process7.67E-04
20GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition7.67E-04
21GO:0032504: multicellular organism reproduction7.67E-04
22GO:1902448: positive regulation of shade avoidance7.67E-04
23GO:0016998: cell wall macromolecule catabolic process1.05E-03
24GO:0009052: pentose-phosphate shunt, non-oxidative branch1.09E-03
25GO:0010731: protein glutathionylation1.09E-03
26GO:0006424: glutamyl-tRNA aminoacylation1.09E-03
27GO:0046739: transport of virus in multicellular host1.09E-03
28GO:2001141: regulation of RNA biosynthetic process1.09E-03
29GO:0000919: cell plate assembly1.45E-03
30GO:0008295: spermidine biosynthetic process1.45E-03
31GO:0006808: regulation of nitrogen utilization1.45E-03
32GO:0006183: GTP biosynthetic process1.45E-03
33GO:0010182: sugar mediated signaling pathway1.71E-03
34GO:0000304: response to singlet oxygen1.85E-03
35GO:0032543: mitochondrial translation1.85E-03
36GO:0045038: protein import into chloroplast thylakoid membrane1.85E-03
37GO:0006665: sphingolipid metabolic process1.85E-03
38GO:0009247: glycolipid biosynthetic process1.85E-03
39GO:0010583: response to cyclopentenone2.24E-03
40GO:0006655: phosphatidylglycerol biosynthetic process2.28E-03
41GO:0010190: cytochrome b6f complex assembly2.28E-03
42GO:0018258: protein O-linked glycosylation via hydroxyproline2.28E-03
43GO:0006561: proline biosynthetic process2.28E-03
44GO:0010405: arabinogalactan protein metabolic process2.28E-03
45GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.28E-03
46GO:0042372: phylloquinone biosynthetic process2.74E-03
47GO:2000033: regulation of seed dormancy process2.74E-03
48GO:0006694: steroid biosynthetic process2.74E-03
49GO:0048280: vesicle fusion with Golgi apparatus2.74E-03
50GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity2.74E-03
51GO:0010027: thylakoid membrane organization3.03E-03
52GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.23E-03
53GO:0071669: plant-type cell wall organization or biogenesis3.23E-03
54GO:0010444: guard mother cell differentiation3.23E-03
55GO:0006955: immune response3.23E-03
56GO:0015995: chlorophyll biosynthetic process3.56E-03
57GO:0009690: cytokinin metabolic process3.74E-03
58GO:0006875: cellular metal ion homeostasis3.74E-03
59GO:0019375: galactolipid biosynthetic process3.74E-03
60GO:0048564: photosystem I assembly3.74E-03
61GO:0045292: mRNA cis splicing, via spliceosome3.74E-03
62GO:0030244: cellulose biosynthetic process3.94E-03
63GO:0010497: plasmodesmata-mediated intercellular transport4.29E-03
64GO:0006526: arginine biosynthetic process4.29E-03
65GO:0032544: plastid translation4.29E-03
66GO:0009808: lignin metabolic process4.29E-03
67GO:0009932: cell tip growth4.29E-03
68GO:0071482: cellular response to light stimulus4.29E-03
69GO:0045337: farnesyl diphosphate biosynthetic process4.85E-03
70GO:0033384: geranyl diphosphate biosynthetic process4.85E-03
71GO:0000373: Group II intron splicing4.85E-03
72GO:0042761: very long-chain fatty acid biosynthetic process5.44E-03
73GO:0006631: fatty acid metabolic process5.93E-03
74GO:0006896: Golgi to vacuole transport6.06E-03
75GO:0006535: cysteine biosynthetic process from serine6.06E-03
76GO:0009688: abscisic acid biosynthetic process6.06E-03
77GO:0043069: negative regulation of programmed cell death6.06E-03
78GO:0048829: root cap development6.06E-03
79GO:0010162: seed dormancy process6.06E-03
80GO:0071555: cell wall organization6.65E-03
81GO:0009073: aromatic amino acid family biosynthetic process6.69E-03
82GO:0006415: translational termination6.69E-03
83GO:0006352: DNA-templated transcription, initiation6.69E-03
84GO:0042546: cell wall biogenesis6.69E-03
85GO:0009750: response to fructose6.69E-03
86GO:0018119: peptidyl-cysteine S-nitrosylation6.69E-03
87GO:0000038: very long-chain fatty acid metabolic process6.69E-03
88GO:0009658: chloroplast organization6.74E-03
89GO:0009735: response to cytokinin6.81E-03
90GO:0016024: CDP-diacylglycerol biosynthetic process7.36E-03
91GO:0045037: protein import into chloroplast stroma7.36E-03
92GO:0012501: programmed cell death7.36E-03
93GO:0030048: actin filament-based movement8.04E-03
94GO:0050826: response to freezing8.04E-03
95GO:0006094: gluconeogenesis8.04E-03
96GO:0042538: hyperosmotic salinity response8.07E-03
97GO:0019253: reductive pentose-phosphate cycle8.75E-03
98GO:0010025: wax biosynthetic process1.02E-02
99GO:0006096: glycolytic process1.03E-02
100GO:0019344: cysteine biosynthetic process1.10E-02
101GO:0007017: microtubule-based process1.18E-02
102GO:0006869: lipid transport1.25E-02
103GO:0031408: oxylipin biosynthetic process1.26E-02
104GO:0003333: amino acid transmembrane transport1.26E-02
105GO:0010091: trichome branching1.52E-02
106GO:0019722: calcium-mediated signaling1.52E-02
107GO:0042147: retrograde transport, endosome to Golgi1.61E-02
108GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.61E-02
109GO:0000226: microtubule cytoskeleton organization1.70E-02
110GO:0000271: polysaccharide biosynthetic process1.70E-02
111GO:0080022: primary root development1.70E-02
112GO:0000413: protein peptidyl-prolyl isomerization1.70E-02
113GO:0006468: protein phosphorylation1.77E-02
114GO:0006520: cellular amino acid metabolic process1.79E-02
115GO:0008654: phospholipid biosynthetic process1.98E-02
116GO:0006623: protein targeting to vacuole1.98E-02
117GO:0071554: cell wall organization or biogenesis2.08E-02
118GO:0006891: intra-Golgi vesicle-mediated transport2.08E-02
119GO:0016132: brassinosteroid biosynthetic process2.08E-02
120GO:0032502: developmental process2.18E-02
121GO:0030163: protein catabolic process2.28E-02
122GO:0009567: double fertilization forming a zygote and endosperm2.38E-02
123GO:0007166: cell surface receptor signaling pathway2.45E-02
124GO:0007267: cell-cell signaling2.49E-02
125GO:0051607: defense response to virus2.59E-02
126GO:0000910: cytokinesis2.59E-02
127GO:0016126: sterol biosynthetic process2.70E-02
128GO:0055114: oxidation-reduction process2.72E-02
129GO:0009793: embryo development ending in seed dormancy2.81E-02
130GO:0009627: systemic acquired resistance2.92E-02
131GO:0042128: nitrate assimilation2.92E-02
132GO:0010411: xyloglucan metabolic process3.04E-02
133GO:0006888: ER to Golgi vesicle-mediated transport3.04E-02
134GO:0016311: dephosphorylation3.15E-02
135GO:0009826: unidimensional cell growth3.20E-02
136GO:0010311: lateral root formation3.38E-02
137GO:0009832: plant-type cell wall biogenesis3.38E-02
138GO:0000160: phosphorelay signal transduction system3.38E-02
139GO:0042254: ribosome biogenesis3.38E-02
140GO:0009813: flavonoid biosynthetic process3.38E-02
141GO:0009407: toxin catabolic process3.50E-02
142GO:0009834: plant-type secondary cell wall biogenesis3.50E-02
143GO:0006970: response to osmotic stress3.57E-02
144GO:0009860: pollen tube growth3.57E-02
145GO:0007568: aging3.62E-02
146GO:0006865: amino acid transport3.74E-02
147GO:0016051: carbohydrate biosynthetic process3.86E-02
148GO:0009637: response to blue light3.86E-02
149GO:0030001: metal ion transport4.24E-02
150GO:0010114: response to red light4.63E-02
151GO:0009926: auxin polar transport4.63E-02
152GO:0045454: cell redox homeostasis4.90E-02
RankGO TermAdjusted P value
1GO:0010301: xanthoxin dehydrogenase activity0.00E+00
2GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
3GO:0050613: delta14-sterol reductase activity0.00E+00
4GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
7GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
8GO:0005048: signal sequence binding0.00E+00
9GO:0050614: delta24-sterol reductase activity0.00E+00
10GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
11GO:0051753: mannan synthase activity1.06E-04
12GO:0009374: biotin binding2.11E-04
13GO:0015088: copper uptake transmembrane transporter activity2.11E-04
14GO:0004328: formamidase activity2.11E-04
15GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity2.11E-04
16GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.11E-04
17GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.11E-04
18GO:0004807: triose-phosphate isomerase activity2.11E-04
19GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.11E-04
20GO:0042834: peptidoglycan binding2.11E-04
21GO:0080132: fatty acid alpha-hydroxylase activity2.11E-04
22GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity4.71E-04
23GO:0003938: IMP dehydrogenase activity4.71E-04
24GO:0004766: spermidine synthase activity4.71E-04
25GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity4.71E-04
26GO:0005504: fatty acid binding7.67E-04
27GO:0004148: dihydrolipoyl dehydrogenase activity7.67E-04
28GO:0004751: ribose-5-phosphate isomerase activity7.67E-04
29GO:0045174: glutathione dehydrogenase (ascorbate) activity7.67E-04
30GO:0030267: glyoxylate reductase (NADP) activity7.67E-04
31GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor7.67E-04
32GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity7.67E-04
33GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity7.67E-04
34GO:0017150: tRNA dihydrouridine synthase activity7.67E-04
35GO:0035250: UDP-galactosyltransferase activity1.09E-03
36GO:0016149: translation release factor activity, codon specific1.09E-03
37GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.09E-03
38GO:0016851: magnesium chelatase activity1.09E-03
39GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.09E-03
40GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.09E-03
41GO:0008097: 5S rRNA binding1.09E-03
42GO:0001872: (1->3)-beta-D-glucan binding1.09E-03
43GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.09E-03
44GO:0052793: pectin acetylesterase activity1.45E-03
45GO:0045430: chalcone isomerase activity1.45E-03
46GO:0046527: glucosyltransferase activity1.45E-03
47GO:0001053: plastid sigma factor activity1.45E-03
48GO:0016836: hydro-lyase activity1.45E-03
49GO:0016987: sigma factor activity1.45E-03
50GO:0010328: auxin influx transmembrane transporter activity1.45E-03
51GO:0003989: acetyl-CoA carboxylase activity1.85E-03
52GO:0009922: fatty acid elongase activity1.85E-03
53GO:0019901: protein kinase binding1.97E-03
54GO:0052689: carboxylic ester hydrolase activity2.10E-03
55GO:0016208: AMP binding2.28E-03
56GO:0008200: ion channel inhibitor activity2.28E-03
57GO:0004605: phosphatidate cytidylyltransferase activity2.28E-03
58GO:1990714: hydroxyproline O-galactosyltransferase activity2.28E-03
59GO:0016722: oxidoreductase activity, oxidizing metal ions2.70E-03
60GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.74E-03
61GO:0004124: cysteine synthase activity2.74E-03
62GO:0051920: peroxiredoxin activity2.74E-03
63GO:0043295: glutathione binding3.23E-03
64GO:0004033: aldo-keto reductase (NADP) activity3.74E-03
65GO:0016209: antioxidant activity3.74E-03
66GO:0008312: 7S RNA binding3.74E-03
67GO:0003747: translation release factor activity4.85E-03
68GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors4.85E-03
69GO:0004337: geranyltranstransferase activity4.85E-03
70GO:0047617: acyl-CoA hydrolase activity5.44E-03
71GO:0005381: iron ion transmembrane transporter activity5.44E-03
72GO:0004364: glutathione transferase activity6.17E-03
73GO:0004161: dimethylallyltranstransferase activity6.69E-03
74GO:0016788: hydrolase activity, acting on ester bonds6.90E-03
75GO:0015293: symporter activity7.22E-03
76GO:0008378: galactosyltransferase activity7.36E-03
77GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.50E-03
78GO:0004565: beta-galactosidase activity8.04E-03
79GO:0004022: alcohol dehydrogenase (NAD) activity8.04E-03
80GO:0003774: motor activity8.75E-03
81GO:0004190: aspartic-type endopeptidase activity9.48E-03
82GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.02E-02
83GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.02E-02
84GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.02E-02
85GO:0046983: protein dimerization activity1.10E-02
86GO:0005528: FK506 binding1.10E-02
87GO:0008324: cation transmembrane transporter activity1.18E-02
88GO:0019706: protein-cysteine S-palmitoyltransferase activity1.26E-02
89GO:0004672: protein kinase activity1.30E-02
90GO:0005507: copper ion binding1.33E-02
91GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.34E-02
92GO:0016760: cellulose synthase (UDP-forming) activity1.43E-02
93GO:0005516: calmodulin binding1.45E-02
94GO:0003924: GTPase activity1.46E-02
95GO:0016758: transferase activity, transferring hexosyl groups1.51E-02
96GO:0003713: transcription coactivator activity1.79E-02
97GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.00E-02
98GO:0016762: xyloglucan:xyloglucosyl transferase activity2.08E-02
99GO:0008289: lipid binding2.21E-02
100GO:0000156: phosphorelay response regulator activity2.28E-02
101GO:0005200: structural constituent of cytoskeleton2.49E-02
102GO:0016597: amino acid binding2.59E-02
103GO:0016413: O-acetyltransferase activity2.59E-02
104GO:0030247: polysaccharide binding3.04E-02
105GO:0016798: hydrolase activity, acting on glycosyl bonds3.04E-02
106GO:0016491: oxidoreductase activity3.38E-02
107GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.50E-02
108GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.62E-02
109GO:0050660: flavin adenine dinucleotide binding3.83E-02
110GO:0003993: acid phosphatase activity3.99E-02
111GO:0004674: protein serine/threonine kinase activity4.04E-02
112GO:0000149: SNARE binding4.11E-02
113GO:0005484: SNAP receptor activity4.63E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0046658: anchored component of plasma membrane1.76E-10
3GO:0009570: chloroplast stroma3.53E-10
4GO:0009941: chloroplast envelope1.43E-09
5GO:0009507: chloroplast2.48E-09
6GO:0031225: anchored component of membrane8.81E-08
7GO:0005886: plasma membrane1.05E-05
8GO:0009505: plant-type cell wall4.70E-05
9GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.11E-04
10GO:0009923: fatty acid elongase complex2.11E-04
11GO:0009536: plastid2.12E-04
12GO:0080085: signal recognition particle, chloroplast targeting4.71E-04
13GO:0010007: magnesium chelatase complex7.67E-04
14GO:0009509: chromoplast7.67E-04
15GO:0009317: acetyl-CoA carboxylase complex7.67E-04
16GO:0048046: apoplast1.06E-03
17GO:0031897: Tic complex1.45E-03
18GO:0009579: thylakoid2.65E-03
19GO:0000139: Golgi membrane3.42E-03
20GO:0012507: ER to Golgi transport vesicle membrane3.74E-03
21GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.29E-03
22GO:0016021: integral component of membrane4.80E-03
23GO:0045298: tubulin complex4.85E-03
24GO:0005576: extracellular region5.15E-03
25GO:0009506: plasmodesma5.33E-03
26GO:0031977: thylakoid lumen5.93E-03
27GO:0016459: myosin complex6.06E-03
28GO:0000311: plastid large ribosomal subunit7.36E-03
29GO:0030659: cytoplasmic vesicle membrane8.75E-03
30GO:0031969: chloroplast membrane8.86E-03
31GO:0009535: chloroplast thylakoid membrane9.15E-03
32GO:0030176: integral component of endoplasmic reticulum membrane9.48E-03
33GO:0043234: protein complex1.02E-02
34GO:0009534: chloroplast thylakoid1.04E-02
35GO:0009706: chloroplast inner membrane1.24E-02
36GO:0005794: Golgi apparatus1.25E-02
37GO:0009543: chloroplast thylakoid lumen1.55E-02
38GO:0005802: trans-Golgi network1.59E-02
39GO:0005768: endosome1.93E-02
40GO:0009504: cell plate1.98E-02
41GO:0005778: peroxisomal membrane2.49E-02
42GO:0031902: late endosome membrane4.37E-02
43GO:0031201: SNARE complex4.37E-02
44GO:0005773: vacuole4.63E-02
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Gene type



Gene DE type