Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G01050

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061635: regulation of protein complex stability0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
5GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
8GO:0019284: L-methionine salvage from S-adenosylmethionine0.00E+00
9GO:0030388: fructose 1,6-bisphosphate metabolic process0.00E+00
10GO:0090706: specification of plant organ position0.00E+00
11GO:1901918: negative regulation of exoribonuclease activity0.00E+00
12GO:0016553: base conversion or substitution editing0.00E+00
13GO:0006000: fructose metabolic process0.00E+00
14GO:0015979: photosynthesis1.20E-15
15GO:0009773: photosynthetic electron transport in photosystem I4.25E-10
16GO:0006094: gluconeogenesis8.04E-08
17GO:0006002: fructose 6-phosphate metabolic process4.33E-07
18GO:0071482: cellular response to light stimulus4.33E-07
19GO:0015976: carbon utilization1.04E-06
20GO:0042549: photosystem II stabilization4.43E-06
21GO:0010207: photosystem II assembly5.40E-06
22GO:0015995: chlorophyll biosynthetic process1.51E-05
23GO:0010206: photosystem II repair3.50E-05
24GO:0010205: photoinhibition4.66E-05
25GO:2001141: regulation of RNA biosynthetic process5.86E-05
26GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.86E-05
27GO:0010037: response to carbon dioxide1.03E-04
28GO:2000122: negative regulation of stomatal complex development1.03E-04
29GO:0045727: positive regulation of translation1.03E-04
30GO:0015994: chlorophyll metabolic process1.03E-04
31GO:0006546: glycine catabolic process1.03E-04
32GO:0005986: sucrose biosynthetic process1.14E-04
33GO:0019253: reductive pentose-phosphate cycle1.37E-04
34GO:0045038: protein import into chloroplast thylakoid membrane1.59E-04
35GO:0009735: response to cytokinin2.22E-04
36GO:0018298: protein-chromophore linkage2.25E-04
37GO:0009768: photosynthesis, light harvesting in photosystem I2.53E-04
38GO:0009409: response to cold3.88E-04
39GO:0010196: nonphotochemical quenching3.95E-04
40GO:0043489: RNA stabilization4.18E-04
41GO:0071370: cellular response to gibberellin stimulus4.18E-04
42GO:0010480: microsporocyte differentiation4.18E-04
43GO:0000481: maturation of 5S rRNA4.18E-04
44GO:0071461: cellular response to redox state4.18E-04
45GO:0043609: regulation of carbon utilization4.18E-04
46GO:0010028: xanthophyll cycle4.18E-04
47GO:0034337: RNA folding4.18E-04
48GO:0010450: inflorescence meristem growth4.18E-04
49GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.18E-04
50GO:0000476: maturation of 4.5S rRNA4.18E-04
51GO:0000967: rRNA 5'-end processing4.18E-04
52GO:0010114: response to red light4.98E-04
53GO:0042631: cellular response to water deprivation5.05E-04
54GO:0009657: plastid organization6.03E-04
55GO:0032544: plastid translation6.03E-04
56GO:0048507: meristem development7.22E-04
57GO:1900871: chloroplast mRNA modification9.05E-04
58GO:0034755: iron ion transmembrane transport9.05E-04
59GO:0090342: regulation of cell aging9.05E-04
60GO:0016122: xanthophyll metabolic process9.05E-04
61GO:0034470: ncRNA processing9.05E-04
62GO:0035304: regulation of protein dephosphorylation9.05E-04
63GO:0080005: photosystem stoichiometry adjustment9.05E-04
64GO:0006352: DNA-templated transcription, initiation1.14E-03
65GO:0018119: peptidyl-cysteine S-nitrosylation1.14E-03
66GO:0019684: photosynthesis, light reaction1.14E-03
67GO:0006810: transport1.42E-03
68GO:0006518: peptide metabolic process1.47E-03
69GO:0006013: mannose metabolic process1.47E-03
70GO:0006696: ergosterol biosynthetic process1.47E-03
71GO:0045493: xylan catabolic process1.47E-03
72GO:2001295: malonyl-CoA biosynthetic process1.47E-03
73GO:0045165: cell fate commitment1.47E-03
74GO:0009718: anthocyanin-containing compound biosynthetic process1.48E-03
75GO:0010218: response to far red light1.83E-03
76GO:0005985: sucrose metabolic process1.87E-03
77GO:0006636: unsaturated fatty acid biosynthetic process2.09E-03
78GO:1901332: negative regulation of lateral root development2.13E-03
79GO:0043572: plastid fission2.13E-03
80GO:0051513: regulation of monopolar cell growth2.13E-03
81GO:0009152: purine ribonucleotide biosynthetic process2.13E-03
82GO:0046653: tetrahydrofolate metabolic process2.13E-03
83GO:0009226: nucleotide-sugar biosynthetic process2.13E-03
84GO:0080170: hydrogen peroxide transmembrane transport2.13E-03
85GO:0009853: photorespiration2.19E-03
86GO:0051205: protein insertion into membrane2.86E-03
87GO:0006542: glutamine biosynthetic process2.86E-03
88GO:0019676: ammonia assimilation cycle2.86E-03
89GO:0010023: proanthocyanidin biosynthetic process2.86E-03
90GO:0019464: glycine decarboxylation via glycine cleavage system2.86E-03
91GO:0009644: response to high light intensity3.34E-03
92GO:0006461: protein complex assembly3.66E-03
93GO:1902183: regulation of shoot apical meristem development3.66E-03
94GO:0010158: abaxial cell fate specification3.66E-03
95GO:0000741: karyogamy4.52E-03
96GO:0010256: endomembrane system organization4.52E-03
97GO:0000470: maturation of LSU-rRNA4.52E-03
98GO:0008152: metabolic process4.94E-03
99GO:0019252: starch biosynthetic process5.31E-03
100GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.46E-03
101GO:0009942: longitudinal axis specification5.46E-03
102GO:0009854: oxidative photosynthetic carbon pathway5.46E-03
103GO:0010019: chloroplast-nucleus signaling pathway5.46E-03
104GO:0019509: L-methionine salvage from methylthioadenosine5.46E-03
105GO:0006096: glycolytic process5.48E-03
106GO:0009658: chloroplast organization6.03E-03
107GO:0048437: floral organ development6.45E-03
108GO:0009850: auxin metabolic process7.50E-03
109GO:0032508: DNA duplex unwinding7.50E-03
110GO:0010492: maintenance of shoot apical meristem identity7.50E-03
111GO:0005978: glycogen biosynthetic process7.50E-03
112GO:0010027: thylakoid membrane organization8.25E-03
113GO:0010093: specification of floral organ identity8.61E-03
114GO:0009932: cell tip growth8.61E-03
115GO:0042128: nitrate assimilation9.22E-03
116GO:2000024: regulation of leaf development9.78E-03
117GO:0000373: Group II intron splicing9.78E-03
118GO:0009051: pentose-phosphate shunt, oxidative branch9.78E-03
119GO:0009821: alkaloid biosynthetic process9.78E-03
120GO:0090305: nucleic acid phosphodiester bond hydrolysis9.78E-03
121GO:0006098: pentose-phosphate shunt9.78E-03
122GO:0009817: defense response to fungus, incompatible interaction1.08E-02
123GO:0009638: phototropism1.10E-02
124GO:0045454: cell redox homeostasis1.10E-02
125GO:0046686: response to cadmium ion1.23E-02
126GO:0006949: syncytium formation1.23E-02
127GO:0006633: fatty acid biosynthetic process1.24E-02
128GO:0007568: aging1.25E-02
129GO:0010119: regulation of stomatal movement1.25E-02
130GO:0043085: positive regulation of catalytic activity1.36E-02
131GO:0006879: cellular iron ion homeostasis1.36E-02
132GO:0000272: polysaccharide catabolic process1.36E-02
133GO:0009750: response to fructose1.36E-02
134GO:0048229: gametophyte development1.36E-02
135GO:0009698: phenylpropanoid metabolic process1.36E-02
136GO:0009089: lysine biosynthetic process via diaminopimelate1.36E-02
137GO:0042742: defense response to bacterium1.37E-02
138GO:0009637: response to blue light1.37E-02
139GO:0007623: circadian rhythm1.40E-02
140GO:0032259: methylation1.42E-02
141GO:0009451: RNA modification1.44E-02
142GO:0005983: starch catabolic process1.50E-02
143GO:0010102: lateral root morphogenesis1.64E-02
144GO:0006006: glucose metabolic process1.64E-02
145GO:0018107: peptidyl-threonine phosphorylation1.64E-02
146GO:0010075: regulation of meristem growth1.64E-02
147GO:0009767: photosynthetic electron transport chain1.64E-02
148GO:0010020: chloroplast fission1.79E-02
149GO:0009933: meristem structural organization1.79E-02
150GO:0009934: regulation of meristem structural organization1.79E-02
151GO:0055114: oxidation-reduction process1.87E-02
152GO:0010030: positive regulation of seed germination1.94E-02
153GO:0010053: root epidermal cell differentiation1.94E-02
154GO:0006833: water transport2.09E-02
155GO:0009664: plant-type cell wall organization2.23E-02
156GO:0009944: polarity specification of adaxial/abaxial axis2.25E-02
157GO:0006364: rRNA processing2.39E-02
158GO:0016575: histone deacetylation2.42E-02
159GO:0006418: tRNA aminoacylation for protein translation2.42E-02
160GO:0061077: chaperone-mediated protein folding2.59E-02
161GO:0010017: red or far-red light signaling pathway2.76E-02
162GO:0009686: gibberellin biosynthetic process2.94E-02
163GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.94E-02
164GO:0005975: carbohydrate metabolic process3.01E-02
165GO:0016117: carotenoid biosynthetic process3.30E-02
166GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.30E-02
167GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.31E-02
168GO:0080022: primary root development3.49E-02
169GO:0034220: ion transmembrane transport3.49E-02
170GO:0000413: protein peptidyl-prolyl isomerization3.49E-02
171GO:0010051: xylem and phloem pattern formation3.49E-02
172GO:0048653: anther development3.49E-02
173GO:0006396: RNA processing3.50E-02
174GO:0010154: fruit development3.68E-02
175GO:0010305: leaf vascular tissue pattern formation3.68E-02
176GO:0010197: polar nucleus fusion3.68E-02
177GO:0010268: brassinosteroid homeostasis3.68E-02
178GO:0009958: positive gravitropism3.68E-02
179GO:0000302: response to reactive oxygen species4.27E-02
180GO:0002229: defense response to oomycetes4.27E-02
181GO:0010193: response to ozone4.27E-02
182GO:0016132: brassinosteroid biosynthetic process4.27E-02
183GO:0009058: biosynthetic process4.48E-02
184GO:0030163: protein catabolic process4.68E-02
185GO:0009828: plant-type cell wall loosening4.89E-02
186GO:0016125: sterol metabolic process4.89E-02
187GO:0006508: proteolysis4.92E-02
RankGO TermAdjusted P value
1GO:0043874: acireductone synthase activity0.00E+00
2GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
3GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
4GO:0051721: protein phosphatase 2A binding0.00E+00
5GO:0043014: alpha-tubulin binding0.00E+00
6GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
7GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
8GO:0042903: tubulin deacetylase activity0.00E+00
9GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0004760: serine-pyruvate transaminase activity0.00E+00
12GO:0046905: phytoene synthase activity0.00E+00
13GO:0008465: glycerate dehydrogenase activity0.00E+00
14GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
15GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
16GO:0050281: serine-glyoxylate transaminase activity0.00E+00
17GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity0.00E+00
18GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
19GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
20GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
21GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
22GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
23GO:0046422: violaxanthin de-epoxidase activity0.00E+00
24GO:0046570: methylthioribulose 1-phosphate dehydratase activity0.00E+00
25GO:0008266: poly(U) RNA binding1.16E-07
26GO:0005528: FK506 binding3.06E-07
27GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.36E-07
28GO:0019843: rRNA binding5.43E-05
29GO:0016851: magnesium chelatase activity5.86E-05
30GO:0001053: plastid sigma factor activity1.03E-04
31GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.03E-04
32GO:0016987: sigma factor activity1.03E-04
33GO:0004089: carbonate dehydratase activity1.14E-04
34GO:0016168: chlorophyll binding1.56E-04
35GO:0016787: hydrolase activity1.72E-04
36GO:0031409: pigment binding1.90E-04
37GO:0042578: phosphoric ester hydrolase activity2.27E-04
38GO:0004332: fructose-bisphosphate aldolase activity2.27E-04
39GO:0010242: oxygen evolving activity4.18E-04
40GO:0051996: squalene synthase activity4.18E-04
41GO:0045485: omega-6 fatty acid desaturase activity4.18E-04
42GO:0046906: tetrapyrrole binding4.18E-04
43GO:0051777: ent-kaurenoate oxidase activity4.18E-04
44GO:0004856: xylulokinase activity4.18E-04
45GO:0052638: indole-3-butyrate beta-glucosyltransferase activity4.18E-04
46GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity9.05E-04
47GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.05E-04
48GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.05E-04
49GO:0008967: phosphoglycolate phosphatase activity9.05E-04
50GO:0047746: chlorophyllase activity9.05E-04
51GO:0042389: omega-3 fatty acid desaturase activity9.05E-04
52GO:0016868: intramolecular transferase activity, phosphotransferases9.05E-04
53GO:0004618: phosphoglycerate kinase activity9.05E-04
54GO:0010297: heteropolysaccharide binding9.05E-04
55GO:0005094: Rho GDP-dissociation inhibitor activity9.05E-04
56GO:0004047: aminomethyltransferase activity9.05E-04
57GO:0002161: aminoacyl-tRNA editing activity1.47E-03
58GO:0004148: dihydrolipoyl dehydrogenase activity1.47E-03
59GO:0004075: biotin carboxylase activity1.47E-03
60GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.47E-03
61GO:0008864: formyltetrahydrofolate deformylase activity1.47E-03
62GO:0048487: beta-tubulin binding2.13E-03
63GO:0004375: glycine dehydrogenase (decarboxylating) activity2.13E-03
64GO:0019201: nucleotide kinase activity2.13E-03
65GO:0015079: potassium ion transmembrane transporter activity2.55E-03
66GO:0004176: ATP-dependent peptidase activity2.80E-03
67GO:0008878: glucose-1-phosphate adenylyltransferase activity2.86E-03
68GO:0046556: alpha-L-arabinofuranosidase activity2.86E-03
69GO:0004345: glucose-6-phosphate dehydrogenase activity2.86E-03
70GO:0008453: alanine-glyoxylate transaminase activity2.86E-03
71GO:0009044: xylan 1,4-beta-xylosidase activity2.86E-03
72GO:0016773: phosphotransferase activity, alcohol group as acceptor3.66E-03
73GO:0004356: glutamate-ammonia ligase activity3.66E-03
74GO:0003989: acetyl-CoA carboxylase activity3.66E-03
75GO:0051011: microtubule minus-end binding3.66E-03
76GO:0004130: cytochrome-c peroxidase activity4.52E-03
77GO:2001070: starch binding4.52E-03
78GO:0050662: coenzyme binding4.95E-03
79GO:0004559: alpha-mannosidase activity5.46E-03
80GO:0051920: peroxiredoxin activity5.46E-03
81GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.46E-03
82GO:0004017: adenylate kinase activity5.46E-03
83GO:0048038: quinone binding5.69E-03
84GO:0019899: enzyme binding6.45E-03
85GO:0004564: beta-fructofuranosidase activity7.50E-03
86GO:0016209: antioxidant activity7.50E-03
87GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.61E-03
88GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.61E-03
89GO:0008236: serine-type peptidase activity1.02E-02
90GO:0004252: serine-type endopeptidase activity1.06E-02
91GO:0016844: strictosidine synthase activity1.10E-02
92GO:0004575: sucrose alpha-glucosidase activity1.10E-02
93GO:0005381: iron ion transmembrane transporter activity1.10E-02
94GO:0005096: GTPase activator activity1.13E-02
95GO:0004222: metalloendopeptidase activity1.19E-02
96GO:0015386: potassium:proton antiporter activity1.36E-02
97GO:0000049: tRNA binding1.50E-02
98GO:0004565: beta-galactosidase activity1.64E-02
99GO:0004022: alcohol dehydrogenase (NAD) activity1.64E-02
100GO:0031072: heat shock protein binding1.64E-02
101GO:0004185: serine-type carboxypeptidase activity1.77E-02
102GO:0042802: identical protein binding1.89E-02
103GO:0051537: 2 iron, 2 sulfur cluster binding1.92E-02
104GO:0043621: protein self-association1.92E-02
105GO:0008146: sulfotransferase activity1.94E-02
106GO:0003735: structural constituent of ribosome2.06E-02
107GO:0004407: histone deacetylase activity2.25E-02
108GO:0008168: methyltransferase activity2.31E-02
109GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.39E-02
110GO:0016788: hydrolase activity, acting on ester bonds2.48E-02
111GO:0005515: protein binding2.52E-02
112GO:0004707: MAP kinase activity2.59E-02
113GO:0033612: receptor serine/threonine kinase binding2.59E-02
114GO:0022891: substrate-specific transmembrane transporter activity2.94E-02
115GO:0003727: single-stranded RNA binding3.11E-02
116GO:0003756: protein disulfide isomerase activity3.11E-02
117GO:0005509: calcium ion binding3.28E-02
118GO:0004812: aminoacyl-tRNA ligase activity3.30E-02
119GO:0003723: RNA binding4.29E-02
120GO:0004518: nuclease activity4.48E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
3GO:0009507: chloroplast3.36E-67
4GO:0009534: chloroplast thylakoid9.30E-40
5GO:0009535: chloroplast thylakoid membrane2.36E-39
6GO:0009570: chloroplast stroma3.41E-36
7GO:0009941: chloroplast envelope1.17E-33
8GO:0009543: chloroplast thylakoid lumen5.17E-23
9GO:0009579: thylakoid1.33E-21
10GO:0030095: chloroplast photosystem II2.18E-13
11GO:0031977: thylakoid lumen8.48E-12
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.96E-09
13GO:0048046: apoplast8.87E-08
14GO:0009523: photosystem II1.04E-07
15GO:0010287: plastoglobule3.12E-07
16GO:0009654: photosystem II oxygen evolving complex4.09E-07
17GO:0019898: extrinsic component of membrane3.18E-06
18GO:0010319: stromule7.43E-06
19GO:0009533: chloroplast stromal thylakoid1.21E-05
20GO:0010007: magnesium chelatase complex2.69E-05
21GO:0009706: chloroplast inner membrane3.01E-05
22GO:0009522: photosystem I5.47E-05
23GO:0031969: chloroplast membrane1.02E-04
24GO:0009783: photosystem II antenna complex4.18E-04
25GO:0009344: nitrite reductase complex [NAD(P)H]4.18E-04
26GO:0009547: plastid ribosome4.18E-04
27GO:0042170: plastid membrane9.05E-04
28GO:0080085: signal recognition particle, chloroplast targeting9.05E-04
29GO:0000427: plastid-encoded plastid RNA polymerase complex9.05E-04
30GO:0016020: membrane1.10E-03
31GO:0000312: plastid small ribosomal subunit1.67E-03
32GO:0009531: secondary cell wall2.13E-03
33GO:0005775: vacuolar lumen2.13E-03
34GO:0005960: glycine cleavage complex2.13E-03
35GO:0042651: thylakoid membrane2.55E-03
36GO:0009538: photosystem I reaction center7.50E-03
37GO:0030529: intracellular ribonucleoprotein complex8.25E-03
38GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.61E-03
39GO:0042644: chloroplast nucleoid9.78E-03
40GO:0005763: mitochondrial small ribosomal subunit9.78E-03
41GO:0005876: spindle microtubule1.10E-02
42GO:0005840: ribosome1.50E-02
43GO:0000311: plastid large ribosomal subunit1.50E-02
44GO:0032040: small-subunit processome1.50E-02
45GO:0009508: plastid chromosome1.64E-02
46GO:0030076: light-harvesting complex1.94E-02
47GO:0009505: plant-type cell wall2.11E-02
48GO:0005773: vacuole3.48E-02
49GO:0016021: integral component of membrane4.12E-02
50GO:0005777: peroxisome4.31E-02
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Gene type



Gene DE type