co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G00355

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016236: macroautophagy	0.00E+00
2	GO:0032780: negative regulation of ATPase activity	0.00E+00
3	GO:0010111: glyoxysome organization	0.00E+00
4	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.25E-04
5	GO:1903648: positive regulation of chlorophyll catabolic process	1.25E-04
6	GO:0019628: urate catabolic process	1.25E-04
7	GO:0030242: pexophagy	1.25E-04
8	GO:0000303: response to superoxide	1.25E-04
9	GO:0034214: protein hexamerization	1.25E-04
10	GO:0046467: membrane lipid biosynthetic process	1.25E-04
11	GO:0006144: purine nucleobase metabolic process	1.25E-04
12	GO:0006950: response to stress	1.52E-04
13	GO:0019395: fatty acid oxidation	2.90E-04
14	GO:0010608: posttranscriptional regulation of gene expression	2.90E-04
15	GO:0010498: proteasomal protein catabolic process	4.78E-04
16	GO:0043617: cellular response to sucrose starvation	4.78E-04
17	GO:0051603: proteolysis involved in cellular protein catabolic process	5.26E-04
18	GO:0031408: oxylipin biosynthetic process	5.28E-04
19	GO:0010200: response to chitin	6.33E-04
20	GO:0051259: protein oligomerization	6.85E-04
21	GO:0006624: vacuolar protein processing	6.85E-04
22	GO:1902476: chloride transmembrane transport	6.85E-04
23	GO:0006809: nitric oxide biosynthetic process	6.85E-04
24	GO:0001676: long-chain fatty acid metabolic process	6.85E-04
25	GO:1903830: magnesium ion transmembrane transport	9.08E-04
26	GO:0045324: late endosome to vacuole transport	9.08E-04
27	GO:0006878: cellular copper ion homeostasis	9.08E-04
28	GO:0006623: protein targeting to vacuole	9.76E-04
29	GO:0006656: phosphatidylcholine biosynthetic process	1.15E-03
30	GO:0043097: pyrimidine nucleoside salvage	1.15E-03
31	GO:0006206: pyrimidine nucleobase metabolic process	1.41E-03
32	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.41E-03
33	GO:0010150: leaf senescence	1.54E-03
34	GO:0000911: cytokinesis by cell plate formation	1.68E-03
35	GO:0006979: response to oxidative stress	1.86E-03
36	GO:0015693: magnesium ion transport	1.98E-03
37	GO:0009610: response to symbiotic fungus	1.98E-03
38	GO:0006955: immune response	1.98E-03
39	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.98E-03
40	GO:0006821: chloride transport	1.98E-03
41	GO:0015937: coenzyme A biosynthetic process	1.98E-03
42	GO:1900057: positive regulation of leaf senescence	1.98E-03
43	GO:0006333: chromatin assembly or disassembly	1.98E-03
44	GO:0006102: isocitrate metabolic process	2.29E-03
45	GO:0006605: protein targeting	2.29E-03
46	GO:0009821: alkaloid biosynthetic process	2.95E-03
47	GO:0009723: response to ethylene	3.21E-03
48	GO:0000209: protein polyubiquitination	3.25E-03
49	GO:0090332: stomatal closure	3.31E-03
50	GO:0010629: negative regulation of gene expression	3.68E-03
51	GO:0019538: protein metabolic process	3.68E-03
52	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.77E-03
53	GO:0016567: protein ubiquitination	3.94E-03
54	GO:0006511: ubiquitin-dependent protein catabolic process	4.09E-03
55	GO:0012501: programmed cell death	4.45E-03
56	GO:0055046: microgametogenesis	4.86E-03
57	GO:0010102: lateral root morphogenesis	4.86E-03
58	GO:0007034: vacuolar transport	5.28E-03
59	GO:0007031: peroxisome organization	5.71E-03
60	GO:0009825: multidimensional cell growth	5.71E-03
61	GO:2000377: regulation of reactive oxygen species metabolic process	6.61E-03
62	GO:0009737: response to abscisic acid	6.91E-03
63	GO:0009695: jasmonic acid biosynthetic process	7.08E-03
64	GO:0009058: biosynthetic process	7.86E-03
65	GO:0031348: negative regulation of defense response	8.05E-03
66	GO:0030433: ubiquitin-dependent ERAD pathway	8.05E-03
67	GO:0006012: galactose metabolic process	8.56E-03
68	GO:0009790: embryo development	8.71E-03
69	GO:0009561: megagametogenesis	9.07E-03
70	GO:0009306: protein secretion	9.07E-03
71	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.60E-03
72	GO:0051028: mRNA transport	9.60E-03
73	GO:0010197: polar nucleus fusion	1.07E-02
74	GO:0015031: protein transport	1.08E-02
75	GO:0009646: response to absence of light	1.12E-02
76	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.15E-02
77	GO:0006470: protein dephosphorylation	1.18E-02
78	GO:0010468: regulation of gene expression	1.23E-02
79	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.24E-02
80	GO:0010193: response to ozone	1.24E-02
81	GO:0006635: fatty acid beta-oxidation	1.24E-02
82	GO:0035556: intracellular signal transduction	1.28E-02
83	GO:0010583: response to cyclopentenone	1.30E-02
84	GO:0016032: viral process	1.30E-02
85	GO:0030163: protein catabolic process	1.36E-02
86	GO:0006464: cellular protein modification process	1.42E-02
87	GO:0006914: autophagy	1.42E-02
88	GO:0010286: heat acclimation	1.48E-02
89	GO:0006904: vesicle docking involved in exocytosis	1.48E-02
90	GO:0051607: defense response to virus	1.54E-02
91	GO:0055114: oxidation-reduction process	1.54E-02
92	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.67E-02
93	GO:0009816: defense response to bacterium, incompatible interaction	1.67E-02
94	GO:0006970: response to osmotic stress	1.72E-02
95	GO:0007568: aging	2.15E-02
96	GO:0044550: secondary metabolite biosynthetic process	2.16E-02
97	GO:0009867: jasmonic acid mediated signaling pathway	2.30E-02
98	GO:0016051: carbohydrate biosynthetic process	2.30E-02
99	GO:0006099: tricarboxylic acid cycle	2.37E-02
100	GO:0034599: cellular response to oxidative stress	2.37E-02
101	GO:0045892: negative regulation of transcription, DNA-templated	2.42E-02
102	GO:0030001: metal ion transport	2.52E-02
103	GO:0006631: fatty acid metabolic process	2.60E-02
104	GO:0009744: response to sucrose	2.75E-02
105	GO:0051707: response to other organism	2.75E-02
106	GO:0000165: MAPK cascade	3.15E-02
107	GO:0009846: pollen germination	3.24E-02
108	GO:0006508: proteolysis	3.98E-02
109	GO:0009409: response to cold	4.22E-02
110	GO:0009553: embryo sac development	4.28E-02
111	GO:0009651: response to salt stress	4.52E-02
112	GO:0051726: regulation of cell cycle	4.56E-02
113	GO:0009738: abscisic acid-activated signaling pathway	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0042030: ATPase inhibitor activity	0.00E+00
2	GO:0004140: dephospho-CoA kinase activity	0.00E+00
3	GO:0033550: MAP kinase tyrosine phosphatase activity	0.00E+00
4	GO:0004846: urate oxidase activity	0.00E+00
5	GO:0004105: choline-phosphate cytidylyltransferase activity	1.25E-04
6	GO:0030544: Hsp70 protein binding	1.25E-04
7	GO:0047216: inositol 3-alpha-galactosyltransferase activity	2.90E-04
8	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	2.90E-04
9	GO:0003988: acetyl-CoA C-acyltransferase activity	2.90E-04
10	GO:0004450: isocitrate dehydrogenase (NADP+) activity	2.90E-04
11	GO:0004175: endopeptidase activity	3.14E-04
12	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	4.78E-04
13	GO:0005047: signal recognition particle binding	4.78E-04
14	GO:0000975: regulatory region DNA binding	4.78E-04
15	GO:0004707: MAP kinase activity	5.28E-04
16	GO:0030527: structural constituent of chromatin	6.85E-04
17	GO:0005253: anion channel activity	9.08E-04
18	GO:0004301: epoxide hydrolase activity	9.08E-04
19	GO:0003924: GTPase activity	1.08E-03
20	GO:0004197: cysteine-type endopeptidase activity	1.11E-03
21	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.15E-03
22	GO:0005247: voltage-gated chloride channel activity	1.41E-03
23	GO:0036402: proteasome-activating ATPase activity	1.41E-03
24	GO:0051213: dioxygenase activity	1.48E-03
25	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	1.68E-03
26	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.68E-03
27	GO:0004849: uridine kinase activity	1.68E-03
28	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.29E-03
29	GO:0004842: ubiquitin-protein transferase activity	3.24E-03
30	GO:0045309: protein phosphorylated amino acid binding	3.31E-03
31	GO:0061630: ubiquitin protein ligase activity	3.74E-03
32	GO:0019904: protein domain specific binding	4.06E-03
33	GO:0008234: cysteine-type peptidase activity	4.64E-03
34	GO:0015095: magnesium ion transmembrane transporter activity	4.86E-03
35	GO:0005525: GTP binding	5.47E-03
36	GO:0004190: aspartic-type endopeptidase activity	5.71E-03
37	GO:0017025: TBP-class protein binding	5.71E-03
38	GO:0004725: protein tyrosine phosphatase activity	6.15E-03
39	GO:0008270: zinc ion binding	9.35E-03
40	GO:0046873: metal ion transmembrane transporter activity	1.07E-02
41	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.36E-02
42	GO:0046982: protein heterodimerization activity	1.57E-02
43	GO:0008375: acetylglucosaminyltransferase activity	1.74E-02
44	GO:0005516: calmodulin binding	2.00E-02
45	GO:0005096: GTPase activator activity	2.01E-02
46	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.30E-02
47	GO:0016787: hydrolase activity	2.35E-02
48	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.45E-02
49	GO:0042803: protein homodimerization activity	2.49E-02
50	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.57E-02
51	GO:0004722: protein serine/threonine phosphatase activity	2.61E-02
52	GO:0005524: ATP binding	2.86E-02
53	GO:0051287: NAD binding	3.15E-02
54	GO:0031625: ubiquitin protein ligase binding	3.66E-02
55	GO:0016301: kinase activity	4.38E-02
56	GO:0016887: ATPase activity	4.52E-02
57	GO:0004672: protein kinase activity	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0071561: nucleus-vacuole junction	0.00E+00
3	GO:0000323: lytic vacuole	7.04E-06
4	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	1.25E-04
5	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	1.25E-04
6	GO:0016602: CCAAT-binding factor complex	2.77E-04
7	GO:0030139: endocytic vesicle	4.78E-04
8	GO:0005776: autophagosome	9.08E-04
9	GO:0005773: vacuole	1.28E-03
10	GO:0034707: chloride channel complex	1.41E-03
11	GO:0016363: nuclear matrix	1.68E-03
12	GO:0031597: cytosolic proteasome complex	1.68E-03
13	GO:0005643: nuclear pore	1.93E-03
14	GO:0031595: nuclear proteasome complex	1.98E-03
15	GO:0005737: cytoplasm	2.60E-03
16	GO:0009514: glyoxysome	2.61E-03
17	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.61E-03
18	GO:0031902: late endosome membrane	2.88E-03
19	GO:0005777: peroxisome	3.17E-03
20	GO:0030665: clathrin-coated vesicle membrane	3.31E-03
21	GO:0008540: proteasome regulatory particle, base subcomplex	3.31E-03
22	GO:0017119: Golgi transport complex	3.68E-03
23	GO:0048471: perinuclear region of cytoplasm	4.06E-03
24	GO:0005635: nuclear envelope	4.49E-03
25	GO:0005764: lysosome	5.28E-03
26	GO:0031410: cytoplasmic vesicle	8.05E-03
27	GO:0030136: clathrin-coated vesicle	9.60E-03
28	GO:0005770: late endosome	1.07E-02
29	GO:0005615: extracellular space	1.15E-02
30	GO:0000785: chromatin	1.30E-02
31	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.75E-02
32	GO:0000786: nucleosome	2.23E-02
33	GO:0005768: endosome	2.54E-02
34	GO:0005886: plasma membrane	2.66E-02
35	GO:0000502: proteasome complex	3.40E-02
36	GO:0005829: cytosol	4.04E-02
37	GO:0009706: chloroplast inner membrane	4.37E-02
38	GO:0005774: vacuolar membrane	4.73E-02
39	GO:0005794: Golgi apparatus	4.96E-02