Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G63510

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042371: vitamin K biosynthetic process0.00E+00
2GO:0006399: tRNA metabolic process0.00E+00
3GO:0070125: mitochondrial translational elongation0.00E+00
4GO:0006429: leucyl-tRNA aminoacylation0.00E+00
5GO:0010275: NAD(P)H dehydrogenase complex assembly0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
8GO:0006642: triglyceride mobilization0.00E+00
9GO:0060416: response to growth hormone0.00E+00
10GO:0042821: pyridoxal biosynthetic process0.00E+00
11GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
12GO:0042820: vitamin B6 catabolic process0.00E+00
13GO:0006412: translation3.37E-13
14GO:0032544: plastid translation5.22E-09
15GO:0042254: ribosome biogenesis7.73E-08
16GO:0009735: response to cytokinin1.33E-06
17GO:0009793: embryo development ending in seed dormancy5.22E-06
18GO:1901259: chloroplast rRNA processing8.52E-06
19GO:0009658: chloroplast organization8.75E-06
20GO:0010027: thylakoid membrane organization1.18E-05
21GO:0045038: protein import into chloroplast thylakoid membrane1.71E-04
22GO:0032543: mitochondrial translation1.71E-04
23GO:0015995: chlorophyll biosynthetic process2.11E-04
24GO:0006655: phosphatidylglycerol biosynthetic process2.44E-04
25GO:0042372: phylloquinone biosynthetic process3.27E-04
26GO:0042547: cell wall modification involved in multidimensional cell growth4.37E-04
27GO:1904964: positive regulation of phytol biosynthetic process4.37E-04
28GO:1902458: positive regulation of stomatal opening4.37E-04
29GO:0034337: RNA folding4.37E-04
30GO:0006434: seryl-tRNA aminoacylation4.37E-04
31GO:0009443: pyridoxal 5'-phosphate salvage4.37E-04
32GO:1903409: reactive oxygen species biosynthetic process4.37E-04
33GO:0006438: valyl-tRNA aminoacylation4.37E-04
34GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process4.37E-04
35GO:1904966: positive regulation of vitamin E biosynthetic process4.37E-04
36GO:0046166: glyceraldehyde-3-phosphate biosynthetic process4.37E-04
37GO:0006353: DNA-templated transcription, termination5.27E-04
38GO:0000413: protein peptidyl-prolyl isomerization5.49E-04
39GO:0071482: cellular response to light stimulus6.43E-04
40GO:0006783: heme biosynthetic process7.70E-04
41GO:0080148: negative regulation of response to water deprivation9.44E-04
42GO:1903426: regulation of reactive oxygen species biosynthetic process9.44E-04
43GO:0010270: photosystem II oxygen evolving complex assembly9.44E-04
44GO:0043039: tRNA aminoacylation9.44E-04
45GO:0006695: cholesterol biosynthetic process9.44E-04
46GO:0010115: regulation of abscisic acid biosynthetic process9.44E-04
47GO:1902326: positive regulation of chlorophyll biosynthetic process9.44E-04
48GO:0045717: negative regulation of fatty acid biosynthetic process9.44E-04
49GO:0018026: peptidyl-lysine monomethylation9.44E-04
50GO:0006782: protoporphyrinogen IX biosynthetic process1.06E-03
51GO:0006352: DNA-templated transcription, initiation1.21E-03
52GO:0016024: CDP-diacylglycerol biosynthetic process1.39E-03
53GO:0045037: protein import into chloroplast stroma1.39E-03
54GO:0032504: multicellular organism reproduction1.54E-03
55GO:0006954: inflammatory response1.54E-03
56GO:0019563: glycerol catabolic process1.54E-03
57GO:0006518: peptide metabolic process1.54E-03
58GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.54E-03
59GO:0090351: seedling development2.00E-03
60GO:2001141: regulation of RNA biosynthetic process2.22E-03
61GO:0010239: chloroplast mRNA processing2.22E-03
62GO:0010731: protein glutathionylation2.22E-03
63GO:0006424: glutamyl-tRNA aminoacylation2.22E-03
64GO:0046739: transport of virus in multicellular host2.22E-03
65GO:0016556: mRNA modification2.22E-03
66GO:0055114: oxidation-reduction process2.24E-03
67GO:0019344: cysteine biosynthetic process2.47E-03
68GO:0009790: embryo development2.65E-03
69GO:0006418: tRNA aminoacylation for protein translation2.73E-03
70GO:0006749: glutathione metabolic process2.99E-03
71GO:0071483: cellular response to blue light2.99E-03
72GO:0010236: plastoquinone biosynthetic process3.83E-03
73GO:0009247: glycolipid biosynthetic process3.83E-03
74GO:0006564: L-serine biosynthetic process3.83E-03
75GO:0009306: protein secretion3.89E-03
76GO:0080022: primary root development4.56E-03
77GO:0006561: proline biosynthetic process4.74E-03
78GO:0010405: arabinogalactan protein metabolic process4.74E-03
79GO:0016554: cytidine to uridine editing4.74E-03
80GO:0042793: transcription from plastid promoter4.74E-03
81GO:0010190: cytochrome b6f complex assembly4.74E-03
82GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.74E-03
83GO:0006828: manganese ion transport4.74E-03
84GO:0032973: amino acid export4.74E-03
85GO:0018258: protein O-linked glycosylation via hydroxyproline4.74E-03
86GO:0010019: chloroplast-nucleus signaling pathway5.72E-03
87GO:0010555: response to mannitol5.72E-03
88GO:0009955: adaxial/abaxial pattern specification5.72E-03
89GO:0042026: protein refolding5.72E-03
90GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.72E-03
91GO:0006458: 'de novo' protein folding5.72E-03
92GO:0006096: glycolytic process5.97E-03
93GO:0006457: protein folding6.55E-03
94GO:0009610: response to symbiotic fungus6.76E-03
95GO:0009395: phospholipid catabolic process6.76E-03
96GO:0009772: photosynthetic electron transport in photosystem II6.76E-03
97GO:0043090: amino acid import6.76E-03
98GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.76E-03
99GO:0010444: guard mother cell differentiation6.76E-03
100GO:0050829: defense response to Gram-negative bacterium6.76E-03
101GO:2000070: regulation of response to water deprivation7.86E-03
102GO:0009642: response to light intensity7.86E-03
103GO:0042255: ribosome assembly7.86E-03
104GO:0006605: protein targeting7.86E-03
105GO:0019375: galactolipid biosynthetic process7.86E-03
106GO:0010078: maintenance of root meristem identity7.86E-03
107GO:0009704: de-etiolation7.86E-03
108GO:0043562: cellular response to nitrogen levels9.03E-03
109GO:0017004: cytochrome complex assembly9.03E-03
110GO:0009932: cell tip growth9.03E-03
111GO:0010497: plasmodesmata-mediated intercellular transport9.03E-03
112GO:0009051: pentose-phosphate shunt, oxidative branch1.03E-02
113GO:0045337: farnesyl diphosphate biosynthetic process1.03E-02
114GO:0010206: photosystem II repair1.03E-02
115GO:0080144: amino acid homeostasis1.03E-02
116GO:0033384: geranyl diphosphate biosynthetic process1.03E-02
117GO:0015979: photosynthesis1.13E-02
118GO:0018298: protein-chromophore linkage1.15E-02
119GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process1.15E-02
120GO:0006779: porphyrin-containing compound biosynthetic process1.15E-02
121GO:1900865: chloroplast RNA modification1.15E-02
122GO:0000160: phosphorelay signal transduction system1.21E-02
123GO:0009688: abscisic acid biosynthetic process1.29E-02
124GO:0006535: cysteine biosynthetic process from serine1.29E-02
125GO:0048527: lateral root development1.34E-02
126GO:0006633: fatty acid biosynthetic process1.35E-02
127GO:0009750: response to fructose1.43E-02
128GO:0018119: peptidyl-cysteine S-nitrosylation1.43E-02
129GO:0030148: sphingolipid biosynthetic process1.43E-02
130GO:0009684: indoleacetic acid biosynthetic process1.43E-02
131GO:0006816: calcium ion transport1.43E-02
132GO:0019684: photosynthesis, light reaction1.43E-02
133GO:0009089: lysine biosynthetic process via diaminopimelate1.43E-02
134GO:0009773: photosynthetic electron transport in photosystem I1.43E-02
135GO:0009073: aromatic amino acid family biosynthetic process1.43E-02
136GO:0006415: translational termination1.43E-02
137GO:0006006: glucose metabolic process1.72E-02
138GO:0050826: response to freezing1.72E-02
139GO:0006094: gluconeogenesis1.72E-02
140GO:0010588: cotyledon vascular tissue pattern formation1.72E-02
141GO:0030048: actin filament-based movement1.72E-02
142GO:0010628: positive regulation of gene expression1.72E-02
143GO:0048467: gynoecium development1.87E-02
144GO:0010207: photosystem II assembly1.87E-02
145GO:0019253: reductive pentose-phosphate cycle1.87E-02
146GO:0006636: unsaturated fatty acid biosynthetic process2.20E-02
147GO:0000027: ribosomal large subunit assembly2.36E-02
148GO:0009736: cytokinin-activated signaling pathway2.56E-02
149GO:0051603: proteolysis involved in cellular protein catabolic process2.65E-02
150GO:0019915: lipid storage2.71E-02
151GO:0061077: chaperone-mediated protein folding2.71E-02
152GO:0007005: mitochondrion organization2.89E-02
153GO:0009814: defense response, incompatible interaction2.89E-02
154GO:0016226: iron-sulfur cluster assembly2.89E-02
155GO:0006730: one-carbon metabolic process2.89E-02
156GO:0019722: calcium-mediated signaling3.27E-02
157GO:0016117: carotenoid biosynthetic process3.46E-02
158GO:0046686: response to cadmium ion3.58E-02
159GO:0008033: tRNA processing3.66E-02
160GO:0010087: phloem or xylem histogenesis3.66E-02
161GO:0042335: cuticle development3.66E-02
162GO:0000271: polysaccharide biosynthetic process3.66E-02
163GO:0010182: sugar mediated signaling pathway3.86E-02
164GO:0009958: positive gravitropism3.86E-02
165GO:0045489: pectin biosynthetic process3.86E-02
166GO:0006814: sodium ion transport4.06E-02
167GO:0008654: phospholipid biosynthetic process4.27E-02
168GO:0009851: auxin biosynthetic process4.27E-02
169GO:0048825: cotyledon development4.27E-02
170GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.48E-02
171GO:0000302: response to reactive oxygen species4.48E-02
172GO:0032502: developmental process4.69E-02
173GO:0007264: small GTPase mediated signal transduction4.69E-02
174GO:1901657: glycosyl compound metabolic process4.91E-02
RankGO TermAdjusted P value
1GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
2GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
3GO:1990534: thermospermine oxidase activity0.00E+00
4GO:0005048: signal sequence binding0.00E+00
5GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
6GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
7GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
8GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
9GO:0010301: xanthoxin dehydrogenase activity0.00E+00
10GO:0050613: delta14-sterol reductase activity0.00E+00
11GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
12GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
13GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
14GO:0004823: leucine-tRNA ligase activity0.00E+00
15GO:0019843: rRNA binding4.71E-26
16GO:0003735: structural constituent of ribosome3.42E-16
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.50E-07
18GO:0016851: magnesium chelatase activity6.33E-05
19GO:0001053: plastid sigma factor activity1.11E-04
20GO:0016987: sigma factor activity1.11E-04
21GO:0051920: peroxiredoxin activity3.27E-04
22GO:0004832: valine-tRNA ligase activity4.37E-04
23GO:0004328: formamidase activity4.37E-04
24GO:0004807: triose-phosphate isomerase activity4.37E-04
25GO:0001530: lipopolysaccharide binding4.37E-04
26GO:0004828: serine-tRNA ligase activity4.37E-04
27GO:0004655: porphobilinogen synthase activity4.37E-04
28GO:0047560: 3-dehydrosphinganine reductase activity4.37E-04
29GO:0009374: biotin binding4.37E-04
30GO:0004853: uroporphyrinogen decarboxylase activity4.37E-04
31GO:0016209: antioxidant activity5.27E-04
32GO:0004033: aldo-keto reductase (NADP) activity5.27E-04
33GO:0042389: omega-3 fatty acid desaturase activity9.44E-04
34GO:0004326: tetrahydrofolylpolyglutamate synthase activity9.44E-04
35GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity9.44E-04
36GO:0009977: proton motive force dependent protein transmembrane transporter activity9.44E-04
37GO:0004617: phosphoglycerate dehydrogenase activity9.44E-04
38GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity9.44E-04
39GO:0080097: L-tryptophan:pyruvate aminotransferase activity9.44E-04
40GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity9.44E-04
41GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.44E-04
42GO:0045174: glutathione dehydrogenase (ascorbate) activity1.54E-03
43GO:0070402: NADPH binding1.54E-03
44GO:0070330: aromatase activity1.54E-03
45GO:0003913: DNA photolyase activity1.54E-03
46GO:0002161: aminoacyl-tRNA editing activity1.54E-03
47GO:0004148: dihydrolipoyl dehydrogenase activity1.54E-03
48GO:0004022: alcohol dehydrogenase (NAD) activity1.58E-03
49GO:0004222: metalloendopeptidase activity1.99E-03
50GO:0008097: 5S rRNA binding2.22E-03
51GO:0008508: bile acid:sodium symporter activity2.22E-03
52GO:0001872: (1->3)-beta-D-glucan binding2.22E-03
53GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.22E-03
54GO:0035250: UDP-galactosyltransferase activity2.22E-03
55GO:0016149: translation release factor activity, codon specific2.22E-03
56GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.22E-03
57GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.22E-03
58GO:0005528: FK506 binding2.47E-03
59GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.99E-03
60GO:0004659: prenyltransferase activity2.99E-03
61GO:0016279: protein-lysine N-methyltransferase activity2.99E-03
62GO:0004345: glucose-6-phosphate dehydrogenase activity2.99E-03
63GO:0016836: hydro-lyase activity2.99E-03
64GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.99E-03
65GO:0043495: protein anchor2.99E-03
66GO:0003989: acetyl-CoA carboxylase activity3.83E-03
67GO:0016846: carbon-sulfur lyase activity3.83E-03
68GO:0018685: alkane 1-monooxygenase activity3.83E-03
69GO:0004040: amidase activity3.83E-03
70GO:0004812: aminoacyl-tRNA ligase activity4.22E-03
71GO:0004605: phosphatidate cytidylyltransferase activity4.74E-03
72GO:1990714: hydroxyproline O-galactosyltransferase activity4.74E-03
73GO:0004130: cytochrome-c peroxidase activity4.74E-03
74GO:0016208: AMP binding4.74E-03
75GO:0004124: cysteine synthase activity5.72E-03
76GO:0009881: photoreceptor activity6.76E-03
77GO:0019899: enzyme binding6.76E-03
78GO:0000156: phosphorelay response regulator activity6.93E-03
79GO:0016722: oxidoreductase activity, oxidizing metal ions7.84E-03
80GO:0008312: 7S RNA binding7.86E-03
81GO:0016597: amino acid binding8.32E-03
82GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.03E-03
83GO:0003747: translation release factor activity1.03E-02
84GO:0004337: geranyltranstransferase activity1.03E-02
85GO:0008236: serine-type peptidase activity1.10E-02
86GO:0005384: manganese ion transmembrane transporter activity1.15E-02
87GO:0044183: protein binding involved in protein folding1.43E-02
88GO:0004161: dimethylallyltranstransferase activity1.43E-02
89GO:0003993: acid phosphatase activity1.53E-02
90GO:0015095: magnesium ion transmembrane transporter activity1.72E-02
91GO:0004364: glutathione transferase activity1.82E-02
92GO:0003774: motor activity1.87E-02
93GO:0008131: primary amine oxidase activity1.87E-02
94GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.87E-02
95GO:0008266: poly(U) RNA binding1.87E-02
96GO:0004185: serine-type carboxypeptidase activity1.90E-02
97GO:0051536: iron-sulfur cluster binding2.36E-02
98GO:0043424: protein histidine kinase binding2.54E-02
99GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.56E-02
100GO:0003723: RNA binding2.58E-02
101GO:0016491: oxidoreductase activity2.62E-02
102GO:0004601: peroxidase activity2.64E-02
103GO:0003690: double-stranded DNA binding2.65E-02
104GO:0004176: ATP-dependent peptidase activity2.71E-02
105GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.89E-02
106GO:0022891: substrate-specific transmembrane transporter activity3.08E-02
107GO:0030570: pectate lyase activity3.08E-02
108GO:0016887: ATPase activity3.20E-02
109GO:0003727: single-stranded RNA binding3.27E-02
110GO:0008514: organic anion transmembrane transporter activity3.27E-02
111GO:0003729: mRNA binding3.29E-02
112GO:0003713: transcription coactivator activity3.86E-02
113GO:0008080: N-acetyltransferase activity3.86E-02
114GO:0010181: FMN binding4.06E-02
115GO:0016758: transferase activity, transferring hexosyl groups4.42E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0000408: EKC/KEOPS complex0.00E+00
4GO:0044391: ribosomal subunit0.00E+00
5GO:0009507: chloroplast1.44E-64
6GO:0009570: chloroplast stroma4.70E-46
7GO:0009941: chloroplast envelope1.60E-42
8GO:0009535: chloroplast thylakoid membrane1.33E-16
9GO:0009579: thylakoid4.56E-14
10GO:0005840: ribosome6.43E-13
11GO:0009534: chloroplast thylakoid6.43E-13
12GO:0009543: chloroplast thylakoid lumen3.60E-12
13GO:0031977: thylakoid lumen3.68E-10
14GO:0000311: plastid large ribosomal subunit6.51E-08
15GO:0009536: plastid4.47E-06
16GO:0010007: magnesium chelatase complex2.92E-05
17GO:0046658: anchored component of plasma membrane4.32E-05
18GO:0009295: nucleoid1.29E-04
19GO:0000312: plastid small ribosomal subunit1.51E-04
20GO:0009533: chloroplast stromal thylakoid4.22E-04
21GO:0009547: plastid ribosome4.37E-04
22GO:0031969: chloroplast membrane5.82E-04
23GO:0080085: signal recognition particle, chloroplast targeting9.44E-04
24GO:0000427: plastid-encoded plastid RNA polymerase complex9.44E-04
25GO:0042170: plastid membrane9.44E-04
26GO:0031225: anchored component of membrane1.00E-03
27GO:0009706: chloroplast inner membrane1.48E-03
28GO:0033281: TAT protein transport complex1.54E-03
29GO:0009509: chromoplast1.54E-03
30GO:0009317: acetyl-CoA carboxylase complex1.54E-03
31GO:0009508: plastid chromosome1.58E-03
32GO:0015934: large ribosomal subunit2.12E-03
33GO:0042646: plastid nucleoid2.22E-03
34GO:0042651: thylakoid membrane2.73E-03
35GO:0015935: small ribosomal subunit3.00E-03
36GO:0009505: plant-type cell wall3.21E-03
37GO:0022626: cytosolic ribosome3.61E-03
38GO:0016363: nuclear matrix5.72E-03
39GO:0005762: mitochondrial large ribosomal subunit5.72E-03
40GO:0048046: apoplast7.21E-03
41GO:0005786: signal recognition particle, endoplasmic reticulum targeting9.03E-03
42GO:0005763: mitochondrial small ribosomal subunit1.03E-02
43GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.03E-02
44GO:0016459: myosin complex1.29E-02
45GO:0016020: membrane1.45E-02
46GO:0032040: small-subunit processome1.57E-02
47GO:0030176: integral component of endoplasmic reticulum membrane2.03E-02
48GO:0022627: cytosolic small ribosomal subunit2.17E-02
49GO:0022625: cytosolic large ribosomal subunit3.67E-02
50GO:0009523: photosystem II4.27E-02
51GO:0010287: plastoglobule4.31E-02
52GO:0005623: cell4.66E-02
53GO:0071944: cell periphery4.91E-02
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Gene type



Gene DE type