Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G63500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1900490: positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity0.00E+00
2GO:1903648: positive regulation of chlorophyll catabolic process1.97E-05
3GO:0048508: embryonic meristem development1.97E-05
4GO:0034728: nucleosome organization1.97E-05
5GO:0080136: priming of cellular response to stress1.97E-05
6GO:1900036: positive regulation of cellular response to heat1.97E-05
7GO:0071902: positive regulation of protein serine/threonine kinase activity1.97E-05
8GO:0046898: response to cycloheximide5.10E-05
9GO:0043631: RNA polyadenylation5.10E-05
10GO:0002240: response to molecule of oomycetes origin5.10E-05
11GO:0009945: radial axis specification5.10E-05
12GO:0016584: nucleosome positioning5.10E-05
13GO:0071217: cellular response to external biotic stimulus5.10E-05
14GO:2000693: positive regulation of seed maturation5.10E-05
15GO:0031929: TOR signaling9.05E-05
16GO:0043044: ATP-dependent chromatin remodeling9.05E-05
17GO:0010272: response to silver ion9.05E-05
18GO:2000034: regulation of seed maturation9.05E-05
19GO:0010506: regulation of autophagy9.05E-05
20GO:0071230: cellular response to amino acid stimulus9.05E-05
21GO:0055069: zinc ion homeostasis1.36E-04
22GO:0016049: cell growth1.75E-04
23GO:0048481: plant ovule development1.85E-04
24GO:0006878: cellular copper ion homeostasis1.86E-04
25GO:0006085: acetyl-CoA biosynthetic process1.86E-04
26GO:2000038: regulation of stomatal complex development1.86E-04
27GO:0009267: cellular response to starvation2.97E-04
28GO:2000037: regulation of stomatal complex patterning3.57E-04
29GO:0009942: longitudinal axis specification3.57E-04
30GO:0030307: positive regulation of cell growth4.19E-04
31GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway4.19E-04
32GO:1900057: positive regulation of leaf senescence4.19E-04
33GO:0009909: regulation of flower development4.56E-04
34GO:0009642: response to light intensity4.84E-04
35GO:0009626: plant-type hypersensitive response5.17E-04
36GO:0009620: response to fungus5.32E-04
37GO:0009808: lignin metabolic process5.50E-04
38GO:0006972: hyperosmotic response5.50E-04
39GO:0010120: camalexin biosynthetic process5.50E-04
40GO:0010345: suberin biosynthetic process6.19E-04
41GO:0010206: photosystem II repair6.19E-04
42GO:0031627: telomeric loop formation7.62E-04
43GO:0010048: vernalization response7.62E-04
44GO:0006378: mRNA polyadenylation8.37E-04
45GO:0006816: calcium ion transport8.37E-04
46GO:0008361: regulation of cell size9.12E-04
47GO:0010152: pollen maturation9.12E-04
48GO:0010229: inflorescence development9.90E-04
49GO:0048467: gynoecium development1.07E-03
50GO:0010143: cutin biosynthetic process1.07E-03
51GO:0010030: positive regulation of seed germination1.15E-03
52GO:0010053: root epidermal cell differentiation1.15E-03
53GO:0010025: wax biosynthetic process1.23E-03
54GO:0009414: response to water deprivation1.33E-03
55GO:0010073: meristem maintenance1.41E-03
56GO:0008299: isoprenoid biosynthetic process1.41E-03
57GO:0051260: protein homooligomerization1.50E-03
58GO:0030433: ubiquitin-dependent ERAD pathway1.59E-03
59GO:0009723: response to ethylene1.70E-03
60GO:0009561: megagametogenesis1.78E-03
61GO:0048653: anther development1.98E-03
62GO:0042335: cuticle development1.98E-03
63GO:0010183: pollen tube guidance2.29E-03
64GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.40E-03
65GO:0000302: response to reactive oxygen species2.40E-03
66GO:0030163: protein catabolic process2.61E-03
67GO:0019760: glucosinolate metabolic process2.73E-03
68GO:0006351: transcription, DNA-templated2.85E-03
69GO:0001666: response to hypoxia3.07E-03
70GO:0006974: cellular response to DNA damage stimulus3.31E-03
71GO:0006950: response to stress3.43E-03
72GO:0009737: response to abscisic acid3.54E-03
73GO:0006468: protein phosphorylation4.14E-03
74GO:0016310: phosphorylation4.24E-03
75GO:0042542: response to hydrogen peroxide4.99E-03
76GO:0045893: positive regulation of transcription, DNA-templated5.39E-03
77GO:0009636: response to toxic substance5.56E-03
78GO:0009846: pollen germination6.00E-03
79GO:0009651: response to salt stress6.30E-03
80GO:0010224: response to UV-B6.46E-03
81GO:0016569: covalent chromatin modification7.72E-03
82GO:0009553: embryo sac development7.89E-03
83GO:0009624: response to nematode8.05E-03
84GO:0006979: response to oxidative stress9.58E-03
85GO:0009790: embryo development1.05E-02
86GO:0006633: fatty acid biosynthetic process1.11E-02
87GO:0010150: leaf senescence1.18E-02
88GO:0010228: vegetative to reproductive phase transition of meristem1.22E-02
89GO:0009739: response to gibberellin1.28E-02
90GO:0009409: response to cold1.29E-02
91GO:0006470: protein dephosphorylation1.30E-02
92GO:0010468: regulation of gene expression1.34E-02
93GO:0009617: response to bacterium1.34E-02
94GO:0006970: response to osmotic stress1.70E-02
95GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.92E-02
96GO:0006355: regulation of transcription, DNA-templated2.03E-02
97GO:0009751: response to salicylic acid2.45E-02
98GO:0006397: mRNA processing2.55E-02
99GO:0048364: root development2.55E-02
100GO:0009753: response to jasmonic acid2.60E-02
101GO:0006508: proteolysis2.94E-02
102GO:0009908: flower development3.47E-02
103GO:0009735: response to cytokinin3.49E-02
104GO:0009738: abscisic acid-activated signaling pathway3.64E-02
105GO:0009555: pollen development3.72E-02
106GO:0051301: cell division3.96E-02
107GO:0006457: protein folding4.48E-02
RankGO TermAdjusted P value
1GO:0060090: binding, bridging0.00E+00
2GO:0015633: zinc-transporting ATPase activity0.00E+00
3GO:0004008: copper-exporting ATPase activity1.97E-05
4GO:0008301: DNA binding, bending1.97E-05
5GO:0016463: zinc-exporting ATPase activity5.10E-05
6GO:0015434: cadmium-transporting ATPase activity5.10E-05
7GO:0008551: cadmium-exporting ATPase activity5.10E-05
8GO:0005515: protein binding1.24E-04
9GO:0003878: ATP citrate synthase activity1.36E-04
10GO:0004652: polynucleotide adenylyltransferase activity1.36E-04
11GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway1.86E-04
12GO:0005524: ATP binding1.91E-04
13GO:0004712: protein serine/threonine/tyrosine kinase activity2.59E-04
14GO:0004672: protein kinase activity3.33E-04
15GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides3.57E-04
16GO:0031491: nucleosome binding3.57E-04
17GO:0042162: telomeric DNA binding4.19E-04
18GO:0030674: protein binding, bridging4.84E-04
19GO:0008138: protein tyrosine/serine/threonine phosphatase activity6.19E-04
20GO:0003691: double-stranded telomeric DNA binding8.37E-04
21GO:0000976: transcription regulatory region sequence-specific DNA binding9.12E-04
22GO:0005388: calcium-transporting ATPase activity9.90E-04
23GO:0003712: transcription cofactor activity1.15E-03
24GO:0003677: DNA binding1.16E-03
25GO:0004725: protein tyrosine phosphatase activity1.23E-03
26GO:0046982: protein heterodimerization activity1.45E-03
27GO:0004707: MAP kinase activity1.50E-03
28GO:0008094: DNA-dependent ATPase activity1.50E-03
29GO:0016779: nucleotidyltransferase activity1.59E-03
30GO:0043565: sequence-specific DNA binding2.21E-03
31GO:0016301: kinase activity3.47E-03
32GO:0008236: serine-type peptidase activity3.55E-03
33GO:0004222: metalloendopeptidase activity3.93E-03
34GO:0016887: ATPase activity4.11E-03
35GO:0000166: nucleotide binding4.70E-03
36GO:0045735: nutrient reservoir activity7.08E-03
37GO:0004386: helicase activity8.56E-03
38GO:0004252: serine-type endopeptidase activity1.01E-02
39GO:0003682: chromatin binding1.67E-02
40GO:0004674: protein serine/threonine kinase activity4.69E-02
41GO:0005516: calmodulin binding4.98E-02
RankGO TermAdjusted P value
1GO:0031931: TORC1 complex9.05E-05
2GO:0009346: citrate lyase complex1.36E-04
3GO:0000783: nuclear telomere cap complex5.50E-04
4GO:0005634: nucleus5.90E-04
5GO:0005654: nucleoplasm7.02E-04
6GO:0009574: preprophase band9.90E-04
7GO:0030176: integral component of endoplasmic reticulum membrane1.15E-03
8GO:0031977: thylakoid lumen4.86E-03
9GO:0009706: chloroplast inner membrane8.05E-03
10GO:0009543: chloroplast thylakoid lumen9.42E-03
11GO:0009524: phragmoplast9.78E-03
12GO:0080008: Cul4-RING E3 ubiquitin ligase complex1.72E-02
13GO:0009535: chloroplast thylakoid membrane2.14E-02
14GO:0009579: thylakoid4.23E-02
15GO:0009534: chloroplast thylakoid4.26E-02
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Gene type



Gene DE type