Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G63490

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090042: tubulin deacetylation0.00E+00
2GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
3GO:0000372: Group I intron splicing0.00E+00
4GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
5GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
6GO:0006429: leucyl-tRNA aminoacylation0.00E+00
7GO:0090706: specification of plant organ position0.00E+00
8GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
9GO:0061635: regulation of protein complex stability0.00E+00
10GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
11GO:0017038: protein import0.00E+00
12GO:0009773: photosynthetic electron transport in photosystem I1.05E-06
13GO:0010275: NAD(P)H dehydrogenase complex assembly5.06E-06
14GO:0032544: plastid translation1.49E-05
15GO:0006000: fructose metabolic process1.79E-05
16GO:0010206: photosystem II repair2.06E-05
17GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.96E-05
18GO:0015994: chlorophyll metabolic process7.06E-05
19GO:0010207: photosystem II assembly8.43E-05
20GO:1902183: regulation of shoot apical meristem development1.11E-04
21GO:0010158: abaxial cell fate specification1.11E-04
22GO:0042549: photosystem II stabilization1.60E-04
23GO:0015979: photosynthesis3.33E-04
24GO:0043266: regulation of potassium ion transport3.34E-04
25GO:0010480: microsporocyte differentiation3.34E-04
26GO:0000481: maturation of 5S rRNA3.34E-04
27GO:0065002: intracellular protein transmembrane transport3.34E-04
28GO:2000021: regulation of ion homeostasis3.34E-04
29GO:0043609: regulation of carbon utilization3.34E-04
30GO:0010028: xanthophyll cycle3.34E-04
31GO:0034337: RNA folding3.34E-04
32GO:0010450: inflorescence meristem growth3.34E-04
33GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.34E-04
34GO:0000476: maturation of 4.5S rRNA3.34E-04
35GO:0000967: rRNA 5'-end processing3.34E-04
36GO:0043953: protein transport by the Tat complex3.34E-04
37GO:0006002: fructose 6-phosphate metabolic process4.36E-04
38GO:2000024: regulation of leaf development5.24E-04
39GO:0000373: Group II intron splicing5.24E-04
40GO:0048507: meristem development5.24E-04
41GO:0010205: photoinhibition6.19E-04
42GO:0034755: iron ion transmembrane transport7.29E-04
43GO:1900871: chloroplast mRNA modification7.29E-04
44GO:0016122: xanthophyll metabolic process7.29E-04
45GO:0030388: fructose 1,6-bisphosphate metabolic process7.29E-04
46GO:0010270: photosystem II oxygen evolving complex assembly7.29E-04
47GO:0034470: ncRNA processing7.29E-04
48GO:0035304: regulation of protein dephosphorylation7.29E-04
49GO:0019684: photosynthesis, light reaction8.32E-04
50GO:0015995: chlorophyll biosynthetic process9.38E-04
51GO:0006094: gluconeogenesis1.07E-03
52GO:0009767: photosynthetic electron transport chain1.07E-03
53GO:0006518: peptide metabolic process1.18E-03
54GO:0043617: cellular response to sucrose starvation1.18E-03
55GO:2001295: malonyl-CoA biosynthetic process1.18E-03
56GO:0045165: cell fate commitment1.18E-03
57GO:0006013: mannose metabolic process1.18E-03
58GO:0009735: response to cytokinin1.48E-03
59GO:0009944: polarity specification of adaxial/abaxial axis1.66E-03
60GO:0016556: mRNA modification1.70E-03
61GO:0055070: copper ion homeostasis1.70E-03
62GO:0009226: nucleotide-sugar biosynthetic process1.70E-03
63GO:0006418: tRNA aminoacylation for protein translation1.84E-03
64GO:0009793: embryo development ending in seed dormancy1.91E-03
65GO:0061077: chaperone-mediated protein folding2.02E-03
66GO:0009644: response to high light intensity2.19E-03
67GO:0006546: glycine catabolic process2.28E-03
68GO:0010109: regulation of photosynthesis2.28E-03
69GO:0045727: positive regulation of translation2.28E-03
70GO:0006364: rRNA processing2.89E-03
71GO:0032543: mitochondrial translation2.91E-03
72GO:0045038: protein import into chloroplast thylakoid membrane2.91E-03
73GO:0035434: copper ion transmembrane transport2.91E-03
74GO:0006461: protein complex assembly2.91E-03
75GO:0006465: signal peptide processing2.91E-03
76GO:0010154: fruit development3.30E-03
77GO:0009646: response to absence of light3.55E-03
78GO:0006096: glycolytic process3.58E-03
79GO:0000741: karyogamy3.60E-03
80GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.60E-03
81GO:0006751: glutathione catabolic process3.60E-03
82GO:0006828: manganese ion transport3.60E-03
83GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.33E-03
84GO:0006458: 'de novo' protein folding4.33E-03
85GO:0009942: longitudinal axis specification4.33E-03
86GO:0042026: protein refolding4.33E-03
87GO:0009645: response to low light intensity stimulus5.11E-03
88GO:0009772: photosynthetic electron transport in photosystem II5.11E-03
89GO:0048437: floral organ development5.11E-03
90GO:0006810: transport5.27E-03
91GO:0006605: protein targeting5.94E-03
92GO:0032508: DNA duplex unwinding5.94E-03
93GO:0010492: maintenance of shoot apical meristem identity5.94E-03
94GO:0006412: translation6.34E-03
95GO:0010093: specification of floral organ identity6.81E-03
96GO:0009657: plastid organization6.81E-03
97GO:0018298: protein-chromophore linkage7.70E-03
98GO:0006098: pentose-phosphate shunt7.73E-03
99GO:0090305: nucleic acid phosphodiester bond hydrolysis7.73E-03
100GO:0006779: porphyrin-containing compound biosynthetic process8.68E-03
101GO:1900865: chloroplast RNA modification8.68E-03
102GO:0006782: protoporphyrinogen IX biosynthetic process9.69E-03
103GO:0006508: proteolysis1.02E-02
104GO:0008152: metabolic process1.05E-02
105GO:0006879: cellular iron ion homeostasis1.07E-02
106GO:0009750: response to fructose1.07E-02
107GO:0018119: peptidyl-cysteine S-nitrosylation1.07E-02
108GO:0048229: gametophyte development1.07E-02
109GO:0006816: calcium ion transport1.07E-02
110GO:0009089: lysine biosynthetic process via diaminopimelate1.07E-02
111GO:0030001: metal ion transport1.12E-02
112GO:0005983: starch catabolic process1.18E-02
113GO:0018107: peptidyl-threonine phosphorylation1.29E-02
114GO:0009718: anthocyanin-containing compound biosynthetic process1.29E-02
115GO:0010075: regulation of meristem growth1.29E-02
116GO:0005986: sucrose biosynthetic process1.29E-02
117GO:0010102: lateral root morphogenesis1.29E-02
118GO:0019253: reductive pentose-phosphate cycle1.41E-02
119GO:0009934: regulation of meristem structural organization1.41E-02
120GO:0009933: meristem structural organization1.41E-02
121GO:0009658: chloroplast organization1.59E-02
122GO:0042254: ribosome biogenesis1.63E-02
123GO:0006636: unsaturated fatty acid biosynthetic process1.65E-02
124GO:0046686: response to cadmium ion1.68E-02
125GO:0051603: proteolysis involved in cellular protein catabolic process1.77E-02
126GO:0055114: oxidation-reduction process1.81E-02
127GO:0009768: photosynthesis, light harvesting in photosystem I1.90E-02
128GO:0016575: histone deacetylation1.90E-02
129GO:0009723: response to ethylene1.91E-02
130GO:0009416: response to light stimulus2.16E-02
131GO:0009686: gibberellin biosynthetic process2.31E-02
132GO:0010051: xylem and phloem pattern formation2.74E-02
133GO:0048653: anther development2.74E-02
134GO:0010305: leaf vascular tissue pattern formation2.89E-02
135GO:0010197: polar nucleus fusion2.89E-02
136GO:0010268: brassinosteroid homeostasis2.89E-02
137GO:0032259: methylation3.21E-02
138GO:0000302: response to reactive oxygen species3.36E-02
139GO:0016132: brassinosteroid biosynthetic process3.36E-02
140GO:0080156: mitochondrial mRNA modification3.36E-02
141GO:0002229: defense response to oomycetes3.36E-02
142GO:0006629: lipid metabolic process3.39E-02
143GO:0042744: hydrogen peroxide catabolic process3.47E-02
144GO:0016032: viral process3.52E-02
145GO:0009409: response to cold3.54E-02
146GO:0010090: trichome morphogenesis3.69E-02
147GO:0030163: protein catabolic process3.69E-02
148GO:0071281: cellular response to iron ion3.69E-02
149GO:0006633: fatty acid biosynthetic process3.82E-02
150GO:0009567: double fertilization forming a zygote and endosperm3.85E-02
151GO:0016125: sterol metabolic process3.85E-02
152GO:0071805: potassium ion transmembrane transport4.02E-02
153GO:0005975: carbohydrate metabolic process4.27E-02
154GO:0009451: RNA modification4.29E-02
155GO:0001666: response to hypoxia4.37E-02
156GO:0010027: thylakoid membrane organization4.37E-02
RankGO TermAdjusted P value
1GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
2GO:0043014: alpha-tubulin binding0.00E+00
3GO:0004823: leucine-tRNA ligase activity0.00E+00
4GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
5GO:0050281: serine-glyoxylate transaminase activity0.00E+00
6GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
7GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
8GO:0046422: violaxanthin de-epoxidase activity0.00E+00
9GO:0051721: protein phosphatase 2A binding0.00E+00
10GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
11GO:0042903: tubulin deacetylase activity0.00E+00
12GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
13GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
14GO:0004822: isoleucine-tRNA ligase activity0.00E+00
15GO:0004760: serine-pyruvate transaminase activity0.00E+00
16GO:0005528: FK506 binding2.65E-11
17GO:0019843: rRNA binding5.28E-09
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.35E-09
19GO:0016787: hydrolase activity4.13E-08
20GO:0002161: aminoacyl-tRNA editing activity1.79E-05
21GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor7.06E-05
22GO:0008266: poly(U) RNA binding8.43E-05
23GO:0045485: omega-6 fatty acid desaturase activity3.34E-04
24GO:0010242: oxygen evolving activity3.34E-04
25GO:0003867: 4-aminobutyrate transaminase activity3.34E-04
26GO:0051777: ent-kaurenoate oxidase activity3.34E-04
27GO:0004856: xylulokinase activity3.34E-04
28GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.29E-04
29GO:0047746: chlorophyllase activity7.29E-04
30GO:0004618: phosphoglycerate kinase activity7.29E-04
31GO:0003839: gamma-glutamylcyclotransferase activity7.29E-04
32GO:0009977: proton motive force dependent protein transmembrane transporter activity7.29E-04
33GO:0004047: aminomethyltransferase activity7.29E-04
34GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity7.29E-04
35GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.29E-04
36GO:0008236: serine-type peptidase activity1.00E-03
37GO:0004075: biotin carboxylase activity1.18E-03
38GO:0030267: glyoxylate reductase (NADP) activity1.18E-03
39GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity1.18E-03
40GO:0015462: ATPase-coupled protein transmembrane transporter activity1.18E-03
41GO:0016531: copper chaperone activity1.18E-03
42GO:0019829: cation-transporting ATPase activity1.18E-03
43GO:0004148: dihydrolipoyl dehydrogenase activity1.18E-03
44GO:0003735: structural constituent of ribosome1.29E-03
45GO:0004252: serine-type endopeptidase activity1.33E-03
46GO:0048487: beta-tubulin binding1.70E-03
47GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.28E-03
48GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.28E-03
49GO:0008453: alanine-glyoxylate transaminase activity2.28E-03
50GO:0004812: aminoacyl-tRNA ligase activity2.84E-03
51GO:0003989: acetyl-CoA carboxylase activity2.91E-03
52GO:0008374: O-acyltransferase activity2.91E-03
53GO:0016773: phosphotransferase activity, alcohol group as acceptor2.91E-03
54GO:0042578: phosphoric ester hydrolase activity3.60E-03
55GO:2001070: starch binding3.60E-03
56GO:0004332: fructose-bisphosphate aldolase activity3.60E-03
57GO:0004130: cytochrome-c peroxidase activity3.60E-03
58GO:0003723: RNA binding3.72E-03
59GO:0048038: quinone binding4.08E-03
60GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.33E-03
61GO:0004559: alpha-mannosidase activity4.33E-03
62GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.33E-03
63GO:0004033: aldo-keto reductase (NADP) activity5.94E-03
64GO:0043022: ribosome binding5.94E-03
65GO:0016168: chlorophyll binding6.23E-03
66GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.81E-03
67GO:0005375: copper ion transmembrane transporter activity6.81E-03
68GO:0004222: metalloendopeptidase activity8.49E-03
69GO:0005384: manganese ion transmembrane transporter activity8.68E-03
70GO:0005381: iron ion transmembrane transporter activity8.68E-03
71GO:0004519: endonuclease activity1.03E-02
72GO:0044183: protein binding involved in protein folding1.07E-02
73GO:0000049: tRNA binding1.18E-02
74GO:0016491: oxidoreductase activity1.22E-02
75GO:0042802: identical protein binding1.24E-02
76GO:0004185: serine-type carboxypeptidase activity1.26E-02
77GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.29E-02
78GO:0004022: alcohol dehydrogenase (NAD) activity1.29E-02
79GO:0015095: magnesium ion transmembrane transporter activity1.29E-02
80GO:0031072: heat shock protein binding1.29E-02
81GO:0004565: beta-galactosidase activity1.29E-02
82GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.41E-02
83GO:0031409: pigment binding1.65E-02
84GO:0016298: lipase activity1.77E-02
85GO:0004407: histone deacetylase activity1.77E-02
86GO:0046872: metal ion binding1.83E-02
87GO:0005509: calcium ion binding1.86E-02
88GO:0015079: potassium ion transmembrane transporter activity1.90E-02
89GO:0004176: ATP-dependent peptidase activity2.03E-02
90GO:0033612: receptor serine/threonine kinase binding2.03E-02
91GO:0022891: substrate-specific transmembrane transporter activity2.31E-02
92GO:0051082: unfolded protein binding2.43E-02
93GO:0050662: coenzyme binding3.05E-02
94GO:0004518: nuclease activity3.52E-02
95GO:0008237: metallopeptidase activity4.02E-02
96GO:0008483: transaminase activity4.02E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
4GO:0009507: chloroplast4.58E-52
5GO:0009570: chloroplast stroma1.74E-30
6GO:0009535: chloroplast thylakoid membrane3.55E-28
7GO:0009534: chloroplast thylakoid4.60E-26
8GO:0009941: chloroplast envelope3.06E-25
9GO:0009543: chloroplast thylakoid lumen1.10E-22
10GO:0009579: thylakoid1.98E-14
11GO:0031977: thylakoid lumen1.57E-12
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.17E-09
13GO:0030095: chloroplast photosystem II2.63E-06
14GO:0009654: photosystem II oxygen evolving complex1.60E-04
15GO:0005840: ribosome2.32E-04
16GO:0009533: chloroplast stromal thylakoid2.83E-04
17GO:0009344: nitrite reductase complex [NAD(P)H]3.34E-04
18GO:0009547: plastid ribosome3.34E-04
19GO:0031361: integral component of thylakoid membrane3.34E-04
20GO:0009782: photosystem I antenna complex3.34E-04
21GO:0019898: extrinsic component of membrane4.37E-04
22GO:0080085: signal recognition particle, chloroplast targeting7.29E-04
23GO:0000311: plastid large ribosomal subunit9.49E-04
24GO:0010287: plastoglobule1.05E-03
25GO:0033281: TAT protein transport complex1.18E-03
26GO:0000312: plastid small ribosomal subunit1.21E-03
27GO:0048046: apoplast2.38E-03
28GO:0009536: plastid3.56E-03
29GO:0009523: photosystem II3.81E-03
30GO:0030529: intracellular ribonucleoprotein complex5.89E-03
31GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.81E-03
32GO:0015934: large ribosomal subunit8.91E-03
33GO:0032040: small-subunit processome1.18E-02
34GO:0030076: light-harvesting complex1.53E-02
35GO:0042651: thylakoid membrane1.90E-02
36GO:0009532: plastid stroma2.03E-02
37GO:0031969: chloroplast membrane2.08E-02
38GO:0009706: chloroplast inner membrane2.43E-02
39GO:0043231: intracellular membrane-bounded organelle3.82E-02
40GO:0005759: mitochondrial matrix3.82E-02
41GO:0010319: stromule4.02E-02
<
Gene type



Gene DE type