Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G63380

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010421: hydrogen peroxide-mediated programmed cell death0.00E+00
2GO:0042430: indole-containing compound metabolic process0.00E+00
3GO:0046865: terpenoid transport0.00E+00
4GO:0006793: phosphorus metabolic process0.00E+00
5GO:0006182: cGMP biosynthetic process0.00E+00
6GO:0006099: tricarboxylic acid cycle6.67E-05
7GO:0009636: response to toxic substance1.22E-04
8GO:0006855: drug transmembrane transport1.30E-04
9GO:0009617: response to bacterium1.48E-04
10GO:0006102: isocitrate metabolic process1.85E-04
11GO:0010193: response to ozone2.06E-04
12GO:0051938: L-glutamate import2.16E-04
13GO:0015760: glucose-6-phosphate transport2.16E-04
14GO:1990641: response to iron ion starvation2.16E-04
15GO:0033306: phytol metabolic process2.16E-04
16GO:1901183: positive regulation of camalexin biosynthetic process2.16E-04
17GO:0046244: salicylic acid catabolic process2.16E-04
18GO:0030163: protein catabolic process2.46E-04
19GO:0009624: response to nematode3.02E-04
20GO:0009615: response to virus3.40E-04
21GO:0009688: abscisic acid biosynthetic process3.88E-04
22GO:0015802: basic amino acid transport4.81E-04
23GO:0009805: coumarin biosynthetic process4.81E-04
24GO:0006101: citrate metabolic process4.81E-04
25GO:0015712: hexose phosphate transport4.81E-04
26GO:0060919: auxin influx4.81E-04
27GO:0008535: respiratory chain complex IV assembly4.81E-04
28GO:0097054: L-glutamate biosynthetic process4.81E-04
29GO:0043091: L-arginine import4.81E-04
30GO:0051592: response to calcium ion4.81E-04
31GO:0009407: toxin catabolic process5.44E-04
32GO:0015692: lead ion transport7.83E-04
33GO:0015714: phosphoenolpyruvate transport7.83E-04
34GO:0080168: abscisic acid transport7.83E-04
35GO:0035436: triose phosphate transmembrane transport7.83E-04
36GO:0010351: lithium ion transport7.83E-04
37GO:0006511: ubiquitin-dependent protein catabolic process9.09E-04
38GO:0003333: amino acid transmembrane transport1.09E-03
39GO:0002239: response to oomycetes1.12E-03
40GO:0006537: glutamate biosynthetic process1.12E-03
41GO:0006882: cellular zinc ion homeostasis1.12E-03
42GO:0001676: long-chain fatty acid metabolic process1.12E-03
43GO:0010116: positive regulation of abscisic acid biosynthetic process1.12E-03
44GO:0019748: secondary metabolic process1.18E-03
45GO:0046686: response to cadmium ion1.46E-03
46GO:0046345: abscisic acid catabolic process1.48E-03
47GO:0048638: regulation of developmental growth1.48E-03
48GO:0033356: UDP-L-arabinose metabolic process1.48E-03
49GO:0015713: phosphoglycerate transport1.48E-03
50GO:0034440: lipid oxidation1.48E-03
51GO:0010109: regulation of photosynthesis1.48E-03
52GO:0019676: ammonia assimilation cycle1.48E-03
53GO:0010225: response to UV-C1.89E-03
54GO:0000304: response to singlet oxygen1.89E-03
55GO:0009697: salicylic acid biosynthetic process1.89E-03
56GO:0006090: pyruvate metabolic process1.89E-03
57GO:0006097: glyoxylate cycle1.89E-03
58GO:0002229: defense response to oomycetes2.17E-03
59GO:0010256: endomembrane system organization2.33E-03
60GO:0043248: proteasome assembly2.33E-03
61GO:0042176: regulation of protein catabolic process2.33E-03
62GO:0010315: auxin efflux2.33E-03
63GO:0006796: phosphate-containing compound metabolic process2.33E-03
64GO:0018258: protein O-linked glycosylation via hydroxyproline2.33E-03
65GO:0009117: nucleotide metabolic process2.33E-03
66GO:0009643: photosynthetic acclimation2.33E-03
67GO:0006014: D-ribose metabolic process2.33E-03
68GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.33E-03
69GO:0006121: mitochondrial electron transport, succinate to ubiquinone2.33E-03
70GO:0010405: arabinogalactan protein metabolic process2.33E-03
71GO:0010252: auxin homeostasis2.62E-03
72GO:0080086: stamen filament development2.80E-03
73GO:0006468: protein phosphorylation3.15E-03
74GO:1900056: negative regulation of leaf senescence3.30E-03
75GO:0019745: pentacyclic triterpenoid biosynthetic process3.30E-03
76GO:0042773: ATP synthesis coupled electron transport3.30E-03
77GO:0030026: cellular manganese ion homeostasis3.30E-03
78GO:1902074: response to salt3.30E-03
79GO:0009751: response to salicylic acid3.35E-03
80GO:0006952: defense response3.39E-03
81GO:0009061: anaerobic respiration3.82E-03
82GO:0030091: protein repair3.82E-03
83GO:0048767: root hair elongation4.27E-03
84GO:0009699: phenylpropanoid biosynthetic process4.38E-03
85GO:0010120: camalexin biosynthetic process4.38E-03
86GO:0046685: response to arsenic-containing substance4.95E-03
87GO:0019432: triglyceride biosynthetic process4.95E-03
88GO:0090332: stomatal closure5.56E-03
89GO:0048354: mucilage biosynthetic process involved in seed coat development5.56E-03
90GO:0010162: seed dormancy process6.18E-03
91GO:0055062: phosphate ion homeostasis6.18E-03
92GO:0007064: mitotic sister chromatid cohesion6.18E-03
93GO:0015770: sucrose transport6.84E-03
94GO:0009807: lignan biosynthetic process6.84E-03
95GO:0048229: gametophyte development6.84E-03
96GO:0042742: defense response to bacterium7.02E-03
97GO:0006979: response to oxidative stress7.12E-03
98GO:0055114: oxidation-reduction process7.43E-03
99GO:0006790: sulfur compound metabolic process7.51E-03
100GO:0012501: programmed cell death7.51E-03
101GO:0002213: defense response to insect7.51E-03
102GO:0006108: malate metabolic process8.22E-03
103GO:0006486: protein glycosylation8.94E-03
104GO:0010540: basipetal auxin transport8.94E-03
105GO:0009901: anther dehiscence9.69E-03
106GO:0046688: response to copper ion9.69E-03
107GO:0046854: phosphatidylinositol phosphorylation9.69E-03
108GO:0010053: root epidermal cell differentiation9.69E-03
109GO:0006096: glycolytic process1.06E-02
110GO:0007010: cytoskeleton organization1.12E-02
111GO:0010187: negative regulation of seed germination1.12E-02
112GO:0009620: response to fungus1.16E-02
113GO:0006874: cellular calcium ion homeostasis1.21E-02
114GO:0009695: jasmonic acid biosynthetic process1.21E-02
115GO:0006825: copper ion transport1.21E-02
116GO:0031408: oxylipin biosynthetic process1.29E-02
117GO:0016998: cell wall macromolecule catabolic process1.29E-02
118GO:0098542: defense response to other organism1.29E-02
119GO:0016226: iron-sulfur cluster assembly1.37E-02
120GO:0035428: hexose transmembrane transport1.37E-02
121GO:0030433: ubiquitin-dependent ERAD pathway1.37E-02
122GO:0031348: negative regulation of defense response1.37E-02
123GO:0032259: methylation1.43E-02
124GO:0040007: growth1.46E-02
125GO:0006012: galactose metabolic process1.46E-02
126GO:0009408: response to heat1.51E-02
127GO:0048653: anther development1.74E-02
128GO:0008033: tRNA processing1.74E-02
129GO:0010118: stomatal movement1.74E-02
130GO:0046323: glucose import1.83E-02
131GO:0006814: sodium ion transport1.93E-02
132GO:0009749: response to glucose2.02E-02
133GO:0019252: starch biosynthetic process2.02E-02
134GO:0009851: auxin biosynthetic process2.02E-02
135GO:0009651: response to salt stress2.11E-02
136GO:0080156: mitochondrial mRNA modification2.12E-02
137GO:0009630: gravitropism2.23E-02
138GO:0007166: cell surface receptor signaling pathway2.53E-02
139GO:0009737: response to abscisic acid2.57E-02
140GO:0009733: response to auxin2.80E-02
141GO:0009816: defense response to bacterium, incompatible interaction2.87E-02
142GO:0009611: response to wounding3.20E-02
143GO:0016311: dephosphorylation3.22E-02
144GO:0009817: defense response to fungus, incompatible interaction3.34E-02
145GO:0030244: cellulose biosynthetic process3.34E-02
146GO:0009832: plant-type cell wall biogenesis3.46E-02
147GO:0006970: response to osmotic stress3.68E-02
148GO:0007568: aging3.70E-02
149GO:0006865: amino acid transport3.82E-02
150GO:0009853: photorespiration3.95E-02
151GO:0045087: innate immune response3.95E-02
152GO:0055085: transmembrane transport4.17E-02
153GO:0080167: response to karrikin4.23E-02
154GO:0006457: protein folding4.27E-02
155GO:0006839: mitochondrial transport4.33E-02
156GO:0006631: fatty acid metabolic process4.46E-02
157GO:0042542: response to hydrogen peroxide4.59E-02
158GO:0006508: proteolysis4.70E-02
159GO:0051707: response to other organism4.73E-02
160GO:0009926: auxin polar transport4.73E-02
161GO:0009744: response to sucrose4.73E-02
162GO:0008643: carbohydrate transport5.00E-02
RankGO TermAdjusted P value
1GO:0051670: inulinase activity0.00E+00
2GO:0050220: prostaglandin-E synthase activity0.00E+00
3GO:0015930: glutamate synthase activity0.00E+00
4GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
5GO:0005524: ATP binding2.04E-08
6GO:0010279: indole-3-acetic acid amido synthetase activity3.35E-05
7GO:0005496: steroid binding5.37E-05
8GO:0016301: kinase activity1.54E-04
9GO:0051669: fructan beta-fructosidase activity2.16E-04
10GO:0031219: levanase activity2.16E-04
11GO:0016041: glutamate synthase (ferredoxin) activity2.16E-04
12GO:0000287: magnesium ion binding2.39E-04
13GO:0004743: pyruvate kinase activity3.31E-04
14GO:0030955: potassium ion binding3.31E-04
15GO:0008559: xenobiotic-transporting ATPase activity4.49E-04
16GO:0005509: calcium ion binding4.60E-04
17GO:0003994: aconitate hydratase activity4.81E-04
18GO:0015152: glucose-6-phosphate transmembrane transporter activity4.81E-04
19GO:0004775: succinate-CoA ligase (ADP-forming) activity4.81E-04
20GO:0050736: O-malonyltransferase activity4.81E-04
21GO:0048531: beta-1,3-galactosyltransferase activity4.81E-04
22GO:0015036: disulfide oxidoreductase activity4.81E-04
23GO:0004385: guanylate kinase activity4.81E-04
24GO:0008517: folic acid transporter activity4.81E-04
25GO:0004776: succinate-CoA ligase (GDP-forming) activity4.81E-04
26GO:0051539: 4 iron, 4 sulfur cluster binding7.64E-04
27GO:0016531: copper chaperone activity7.83E-04
28GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity7.83E-04
29GO:0004383: guanylate cyclase activity7.83E-04
30GO:0016165: linoleate 13S-lipoxygenase activity7.83E-04
31GO:0071917: triose-phosphate transmembrane transporter activity7.83E-04
32GO:0004364: glutathione transferase activity8.47E-04
33GO:0009055: electron carrier activity8.47E-04
34GO:0004674: protein serine/threonine kinase activity9.08E-04
35GO:0051537: 2 iron, 2 sulfur cluster binding9.81E-04
36GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.01E-03
37GO:0004298: threonine-type endopeptidase activity1.09E-03
38GO:0015189: L-lysine transmembrane transporter activity1.12E-03
39GO:0015181: arginine transmembrane transporter activity1.12E-03
40GO:0004449: isocitrate dehydrogenase (NAD+) activity1.12E-03
41GO:0042299: lupeol synthase activity1.12E-03
42GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity1.48E-03
43GO:0015369: calcium:proton antiporter activity1.48E-03
44GO:0010328: auxin influx transmembrane transporter activity1.48E-03
45GO:0005313: L-glutamate transmembrane transporter activity1.48E-03
46GO:0004470: malic enzyme activity1.48E-03
47GO:0004031: aldehyde oxidase activity1.48E-03
48GO:0050302: indole-3-acetaldehyde oxidase activity1.48E-03
49GO:0016866: intramolecular transferase activity1.48E-03
50GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor1.48E-03
51GO:0015120: phosphoglycerate transmembrane transporter activity1.48E-03
52GO:0015368: calcium:cation antiporter activity1.48E-03
53GO:0004737: pyruvate decarboxylase activity1.48E-03
54GO:0010294: abscisic acid glucosyltransferase activity1.89E-03
55GO:0015145: monosaccharide transmembrane transporter activity1.89E-03
56GO:0008177: succinate dehydrogenase (ubiquinone) activity1.89E-03
57GO:0000104: succinate dehydrogenase activity1.89E-03
58GO:0051538: 3 iron, 4 sulfur cluster binding1.89E-03
59GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity1.89E-03
60GO:0002020: protease binding1.89E-03
61GO:1990714: hydroxyproline O-galactosyltransferase activity2.33E-03
62GO:0004556: alpha-amylase activity2.33E-03
63GO:0016462: pyrophosphatase activity2.33E-03
64GO:0036402: proteasome-activating ATPase activity2.33E-03
65GO:0030976: thiamine pyrophosphate binding2.33E-03
66GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.80E-03
67GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.80E-03
68GO:0102391: decanoate--CoA ligase activity2.80E-03
69GO:0004747: ribokinase activity2.80E-03
70GO:0004144: diacylglycerol O-acyltransferase activity2.80E-03
71GO:0003978: UDP-glucose 4-epimerase activity2.80E-03
72GO:0008113: peptide-methionine (S)-S-oxide reductase activity2.80E-03
73GO:0051213: dioxygenase activity3.12E-03
74GO:0016831: carboxy-lyase activity3.30E-03
75GO:0008506: sucrose:proton symporter activity3.30E-03
76GO:0004427: inorganic diphosphatase activity3.30E-03
77GO:0008320: protein transmembrane transporter activity3.30E-03
78GO:0004467: long-chain fatty acid-CoA ligase activity3.30E-03
79GO:0030247: polysaccharide binding3.67E-03
80GO:0015297: antiporter activity3.79E-03
81GO:0004033: aldo-keto reductase (NADP) activity3.82E-03
82GO:0008865: fructokinase activity3.82E-03
83GO:0015491: cation:cation antiporter activity3.82E-03
84GO:0004714: transmembrane receptor protein tyrosine kinase activity3.82E-03
85GO:0015238: drug transmembrane transporter activity4.27E-03
86GO:0008194: UDP-glycosyltransferase activity4.64E-03
87GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.69E-03
88GO:0050897: cobalt ion binding4.69E-03
89GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors5.14E-03
90GO:0015174: basic amino acid transmembrane transporter activity5.56E-03
91GO:0045309: protein phosphorylated amino acid binding5.56E-03
92GO:0030234: enzyme regulator activity6.18E-03
93GO:0008171: O-methyltransferase activity6.18E-03
94GO:0046872: metal ion binding6.60E-03
95GO:0004129: cytochrome-c oxidase activity6.84E-03
96GO:0019904: protein domain specific binding6.84E-03
97GO:0008378: galactosyltransferase activity7.51E-03
98GO:0051287: NAD binding8.03E-03
99GO:0015114: phosphate ion transmembrane transporter activity8.22E-03
100GO:0010329: auxin efflux transmembrane transporter activity8.22E-03
101GO:0004022: alcohol dehydrogenase (NAD) activity8.22E-03
102GO:0005315: inorganic phosphate transmembrane transporter activity8.22E-03
103GO:0050660: flavin adenine dinucleotide binding8.44E-03
104GO:0008233: peptidase activity9.02E-03
105GO:0017025: TBP-class protein binding9.69E-03
106GO:0015171: amino acid transmembrane transporter activity9.91E-03
107GO:0003954: NADH dehydrogenase activity1.12E-02
108GO:0051536: iron-sulfur cluster binding1.12E-02
109GO:0016491: oxidoreductase activity1.13E-02
110GO:0080044: quercetin 7-O-glucosyltransferase activity1.16E-02
111GO:0080043: quercetin 3-O-glucosyltransferase activity1.16E-02
112GO:0015035: protein disulfide oxidoreductase activity1.31E-02
113GO:0022891: substrate-specific transmembrane transporter activity1.46E-02
114GO:0016758: transferase activity, transferring hexosyl groups1.56E-02
115GO:0005355: glucose transmembrane transporter activity1.93E-02
116GO:0010181: FMN binding1.93E-02
117GO:0008137: NADH dehydrogenase (ubiquinone) activity2.12E-02
118GO:0016757: transferase activity, transferring glycosyl groups2.16E-02
119GO:0004197: cysteine-type endopeptidase activity2.23E-02
120GO:0008237: metallopeptidase activity2.54E-02
121GO:0005200: structural constituent of cytoskeleton2.54E-02
122GO:0005215: transporter activity2.74E-02
123GO:0009931: calcium-dependent protein serine/threonine kinase activity2.99E-02
124GO:0004683: calmodulin-dependent protein kinase activity3.10E-02
125GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.22E-02
126GO:0008168: methyltransferase activity3.29E-02
127GO:0004222: metalloendopeptidase activity3.58E-02
128GO:0003697: single-stranded DNA binding3.95E-02
129GO:0016740: transferase activity3.98E-02
130GO:0005507: copper ion binding4.80E-02
131GO:0043621: protein self-association5.00E-02
RankGO TermAdjusted P value
1GO:0005829: cytosol4.28E-07
2GO:0000502: proteasome complex6.29E-07
3GO:0005886: plasma membrane5.95E-06
4GO:0008541: proteasome regulatory particle, lid subcomplex1.64E-05
5GO:0016020: membrane3.81E-04
6GO:0016021: integral component of membrane4.48E-04
7GO:0031314: extrinsic component of mitochondrial inner membrane4.81E-04
8GO:0030134: ER to Golgi transport vesicle4.81E-04
9GO:0005751: mitochondrial respiratory chain complex IV7.83E-04
10GO:0046861: glyoxysomal membrane7.83E-04
11GO:0005758: mitochondrial intermembrane space9.02E-04
12GO:0005839: proteasome core complex1.09E-03
13GO:0005794: Golgi apparatus1.22E-03
14GO:0005801: cis-Golgi network2.80E-03
15GO:0031597: cytosolic proteasome complex2.80E-03
16GO:0031595: nuclear proteasome complex3.30E-03
17GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)3.82E-03
18GO:0045273: respiratory chain complex II3.82E-03
19GO:0005618: cell wall4.04E-03
20GO:0009514: glyoxysome4.38E-03
21GO:0019773: proteasome core complex, alpha-subunit complex4.38E-03
22GO:0008540: proteasome regulatory particle, base subcomplex5.56E-03
23GO:0005774: vacuolar membrane8.26E-03
24GO:0005750: mitochondrial respiratory chain complex III8.94E-03
25GO:0045271: respiratory chain complex I1.21E-02
26GO:0009506: plasmodesma1.32E-02
27GO:0005743: mitochondrial inner membrane1.38E-02
28GO:0005783: endoplasmic reticulum1.50E-02
29GO:0009705: plant-type vacuole membrane2.21E-02
30GO:0009536: plastid3.19E-02
31GO:0005739: mitochondrion3.57E-02
32GO:0000325: plant-type vacuole3.70E-02
33GO:0031969: chloroplast membrane4.23E-02
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Gene type



Gene DE type