co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G62390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
2	GO:0010480: microsporocyte differentiation	0.00E+00
3	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
6	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
7	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
8	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.92E-07
9	GO:0032543: mitochondrial translation	1.36E-04
10	GO:0015995: chlorophyll biosynthetic process	1.45E-04
11	GO:0048437: floral organ development	3.40E-04
12	GO:0006824: cobalt ion transport	3.78E-04
13	GO:0043266: regulation of potassium ion transport	3.78E-04
14	GO:0031338: regulation of vesicle fusion	3.78E-04
15	GO:2000021: regulation of ion homeostasis	3.78E-04
16	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.78E-04
17	GO:0060627: regulation of vesicle-mediated transport	3.78E-04
18	GO:0010206: photosystem II repair	6.25E-04
19	GO:0034755: iron ion transmembrane transport	8.22E-04
20	GO:0010115: regulation of abscisic acid biosynthetic process	8.22E-04
21	GO:0045717: negative regulation of fatty acid biosynthetic process	8.22E-04
22	GO:0010541: acropetal auxin transport	8.22E-04
23	GO:0010270: photosystem II oxygen evolving complex assembly	8.22E-04
24	GO:0048229: gametophyte development	9.90E-04
25	GO:0010075: regulation of meristem growth	1.28E-03
26	GO:0006421: asparaginyl-tRNA aminoacylation	1.33E-03
27	GO:0010160: formation of animal organ boundary	1.33E-03
28	GO:0006518: peptide metabolic process	1.33E-03
29	GO:0043617: cellular response to sucrose starvation	1.33E-03
30	GO:0090630: activation of GTPase activity	1.33E-03
31	GO:2001295: malonyl-CoA biosynthetic process	1.33E-03
32	GO:0090506: axillary shoot meristem initiation	1.33E-03
33	GO:1902448: positive regulation of shade avoidance	1.33E-03
34	GO:0016310: phosphorylation	1.35E-03
35	GO:0009934: regulation of meristem structural organization	1.44E-03
36	GO:0010020: chloroplast fission	1.44E-03
37	GO:0016556: mRNA modification	1.92E-03
38	GO:0006424: glutamyl-tRNA aminoacylation	1.92E-03
39	GO:0043572: plastid fission	1.92E-03
40	GO:0010371: regulation of gibberellin biosynthetic process	1.92E-03
41	GO:0051639: actin filament network formation	1.92E-03
42	GO:0044211: CTP salvage	1.92E-03
43	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.92E-03
44	GO:0006418: tRNA aminoacylation for protein translation	2.20E-03
45	GO:0015846: polyamine transport	2.58E-03
46	GO:0031122: cytoplasmic microtubule organization	2.58E-03
47	GO:0044206: UMP salvage	2.58E-03
48	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	2.58E-03
49	GO:0051781: positive regulation of cell division	2.58E-03
50	GO:0051764: actin crosslink formation	2.58E-03
51	GO:0006468: protein phosphorylation	2.87E-03
52	GO:0048443: stamen development	3.14E-03
53	GO:0000304: response to singlet oxygen	3.30E-03
54	GO:0043097: pyrimidine nucleoside salvage	3.30E-03
55	GO:0045487: gibberellin catabolic process	3.30E-03
56	GO:0016123: xanthophyll biosynthetic process	3.30E-03
57	GO:0048653: anther development	3.68E-03
58	GO:0006206: pyrimidine nucleobase metabolic process	4.08E-03
59	GO:0009913: epidermal cell differentiation	4.08E-03
60	GO:0006655: phosphatidylglycerol biosynthetic process	4.08E-03
61	GO:0060918: auxin transport	4.08E-03
62	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.08E-03
63	GO:0006796: phosphate-containing compound metabolic process	4.08E-03
64	GO:0010405: arabinogalactan protein metabolic process	4.08E-03
65	GO:0010304: PSII associated light-harvesting complex II catabolic process	4.08E-03
66	GO:0006751: glutathione catabolic process	4.08E-03
67	GO:0042549: photosystem II stabilization	4.08E-03
68	GO:0006828: manganese ion transport	4.08E-03
69	GO:0006458: 'de novo' protein folding	4.92E-03
70	GO:0010067: procambium histogenesis	4.92E-03
71	GO:0042026: protein refolding	4.92E-03
72	GO:0006955: immune response	5.81E-03
73	GO:0009395: phospholipid catabolic process	5.81E-03
74	GO:0016559: peroxisome fission	6.75E-03
75	GO:0008610: lipid biosynthetic process	6.75E-03
76	GO:0010027: thylakoid membrane organization	7.09E-03
77	GO:0009657: plastid organization	7.75E-03
78	GO:0032544: plastid translation	7.75E-03
79	GO:0071482: cellular response to light stimulus	7.75E-03
80	GO:0015996: chlorophyll catabolic process	7.75E-03
81	GO:0006754: ATP biosynthetic process	8.79E-03
82	GO:0009817: defense response to fungus, incompatible interaction	9.27E-03
83	GO:0006779: porphyrin-containing compound biosynthetic process	9.89E-03
84	GO:0006633: fatty acid biosynthetic process	1.02E-02
85	GO:0019538: protein metabolic process	1.10E-02
86	GO:0006949: syncytium formation	1.10E-02
87	GO:0006782: protoporphyrinogen IX biosynthetic process	1.10E-02
88	GO:0016042: lipid catabolic process	1.15E-02
89	GO:0045490: pectin catabolic process	1.15E-02
90	GO:0006415: translational termination	1.22E-02
91	GO:1903507: negative regulation of nucleic acid-templated transcription	1.22E-02
92	GO:0018119: peptidyl-cysteine S-nitrosylation	1.22E-02
93	GO:0000038: very long-chain fatty acid metabolic process	1.22E-02
94	GO:0006816: calcium ion transport	1.22E-02
95	GO:0009739: response to gibberellin	1.33E-02
96	GO:0016024: CDP-diacylglycerol biosynthetic process	1.34E-02
97	GO:0010152: pollen maturation	1.34E-02
98	GO:0008361: regulation of cell size	1.34E-02
99	GO:0012501: programmed cell death	1.34E-02
100	GO:0006820: anion transport	1.34E-02
101	GO:0008152: metabolic process	1.39E-02
102	GO:0010102: lateral root morphogenesis	1.47E-02
103	GO:0010223: secondary shoot formation	1.60E-02
104	GO:0010540: basipetal auxin transport	1.60E-02
105	GO:0048768: root hair cell tip growth	1.60E-02
106	GO:0010143: cutin biosynthetic process	1.60E-02
107	GO:0071732: cellular response to nitric oxide	1.74E-02
108	GO:0010030: positive regulation of seed germination	1.74E-02
109	GO:0009664: plant-type cell wall organization	1.91E-02
110	GO:0042538: hyperosmotic salinity response	1.91E-02
111	GO:0009658: chloroplast organization	2.01E-02
112	GO:0007010: cytoskeleton organization	2.02E-02
113	GO:0051017: actin filament bundle assembly	2.02E-02
114	GO:0031408: oxylipin biosynthetic process	2.32E-02
115	GO:0016998: cell wall macromolecule catabolic process	2.32E-02
116	GO:0061077: chaperone-mediated protein folding	2.32E-02
117	GO:0035428: hexose transmembrane transport	2.48E-02
118	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.48E-02
119	GO:0080092: regulation of pollen tube growth	2.48E-02
120	GO:0080167: response to karrikin	2.63E-02
121	GO:0071369: cellular response to ethylene stimulus	2.64E-02
122	GO:0001944: vasculature development	2.64E-02
123	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.64E-02
124	GO:0009306: protein secretion	2.80E-02
125	GO:0010089: xylem development	2.80E-02
126	GO:0009416: response to light stimulus	2.83E-02
127	GO:0042545: cell wall modification	2.84E-02
128	GO:0016117: carotenoid biosynthetic process	2.96E-02
129	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.96E-02
130	GO:0015979: photosynthesis	3.10E-02
131	GO:0042335: cuticle development	3.13E-02
132	GO:0000413: protein peptidyl-prolyl isomerization	3.13E-02
133	GO:0010087: phloem or xylem histogenesis	3.13E-02
134	GO:0042631: cellular response to water deprivation	3.13E-02
135	GO:0009958: positive gravitropism	3.30E-02
136	GO:0046323: glucose import	3.30E-02
137	GO:0006814: sodium ion transport	3.48E-02
138	GO:0009646: response to absence of light	3.48E-02
139	GO:0009733: response to auxin	3.53E-02
140	GO:0002229: defense response to oomycetes	3.83E-02
141	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.83E-02
142	GO:0071554: cell wall organization or biogenesis	3.83E-02
143	GO:0007264: small GTPase mediated signal transduction	4.02E-02
144	GO:0071281: cellular response to iron ion	4.21E-02
145	GO:0030163: protein catabolic process	4.21E-02
146	GO:0009639: response to red or far red light	4.40E-02
147	GO:0009828: plant-type cell wall loosening	4.40E-02
148	GO:0016125: sterol metabolic process	4.40E-02
149	GO:0009753: response to jasmonic acid	4.64E-02
150	GO:0009793: embryo development ending in seed dormancy	4.91E-02
151	GO:0016126: sterol biosynthetic process	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
2	GO:0038198: auxin receptor activity	0.00E+00
3	GO:0019808: polyamine binding	0.00E+00
4	GO:0004823: leucine-tRNA ligase activity	0.00E+00
5	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
6	GO:1990534: thermospermine oxidase activity	0.00E+00
7	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
8	GO:0004496: mevalonate kinase activity	0.00E+00
9	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
10	GO:0016851: magnesium chelatase activity	4.92E-05
11	GO:0033612: receptor serine/threonine kinase binding	2.36E-04
12	GO:0016788: hydrolase activity, acting on ester bonds	2.44E-04
13	GO:0004856: xylulokinase activity	3.78E-04
14	GO:0008568: microtubule-severing ATPase activity	3.78E-04
15	GO:0034256: chlorophyll(ide) b reductase activity	3.78E-04
16	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	3.78E-04
17	GO:0005227: calcium activated cation channel activity	3.78E-04
18	GO:0008252: nucleotidase activity	3.78E-04
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.78E-04
20	GO:0042834: peptidoglycan binding	3.78E-04
21	GO:0004033: aldo-keto reductase (NADP) activity	4.26E-04
22	GO:0005524: ATP binding	5.08E-04
23	GO:0000822: inositol hexakisphosphate binding	8.22E-04
24	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	8.22E-04
25	GO:0003839: gamma-glutamylcyclotransferase activity	8.22E-04
26	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.22E-04
27	GO:0008236: serine-type peptidase activity	1.25E-03
28	GO:0004565: beta-galactosidase activity	1.28E-03
29	GO:0004816: asparagine-tRNA ligase activity	1.33E-03
30	GO:0004075: biotin carboxylase activity	1.33E-03
31	GO:0030267: glyoxylate reductase (NADP) activity	1.33E-03
32	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.33E-03
33	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	1.33E-03
34	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.33E-03
35	GO:0003913: DNA photolyase activity	1.33E-03
36	GO:0002161: aminoacyl-tRNA editing activity	1.33E-03
37	GO:0004674: protein serine/threonine kinase activity	1.60E-03
38	GO:0016149: translation release factor activity, codon specific	1.92E-03
39	GO:0043023: ribosomal large subunit binding	1.92E-03
40	GO:0052689: carboxylic ester hydrolase activity	1.92E-03
41	GO:0008508: bile acid:sodium symporter activity	1.92E-03
42	GO:0001872: (1->3)-beta-D-glucan binding	1.92E-03
43	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.92E-03
44	GO:0005528: FK506 binding	1.99E-03
45	GO:0016301: kinase activity	2.09E-03
46	GO:0008526: phosphatidylinositol transporter activity	2.58E-03
47	GO:0004845: uracil phosphoribosyltransferase activity	2.58E-03
48	GO:0010011: auxin binding	2.58E-03
49	GO:0016836: hydro-lyase activity	2.58E-03
50	GO:0004045: aminoacyl-tRNA hydrolase activity	2.58E-03
51	GO:0052793: pectin acetylesterase activity	2.58E-03
52	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.04E-03
53	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.30E-03
54	GO:0017137: Rab GTPase binding	3.30E-03
55	GO:0003989: acetyl-CoA carboxylase activity	3.30E-03
56	GO:0008381: mechanically-gated ion channel activity	3.30E-03
57	GO:0004812: aminoacyl-tRNA ligase activity	3.40E-03
58	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.08E-03
59	GO:0042578: phosphoric ester hydrolase activity	4.08E-03
60	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.08E-03
61	GO:0004849: uridine kinase activity	4.92E-03
62	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.92E-03
63	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.92E-03
64	GO:0051920: peroxiredoxin activity	4.92E-03
65	GO:0015631: tubulin binding	4.92E-03
66	GO:0004427: inorganic diphosphatase activity	5.81E-03
67	GO:0009881: photoreceptor activity	5.81E-03
68	GO:0043022: ribosome binding	6.75E-03
69	GO:0016209: antioxidant activity	6.75E-03
70	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	8.79E-03
71	GO:0003747: translation release factor activity	8.79E-03
72	GO:0005384: manganese ion transmembrane transporter activity	9.89E-03
73	GO:0047617: acyl-CoA hydrolase activity	9.89E-03
74	GO:0005381: iron ion transmembrane transporter activity	9.89E-03
75	GO:0004222: metalloendopeptidase activity	1.02E-02
76	GO:0008017: microtubule binding	1.22E-02
77	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.22E-02
78	GO:0044183: protein binding involved in protein folding	1.22E-02
79	GO:0047372: acylglycerol lipase activity	1.22E-02
80	GO:0003993: acid phosphatase activity	1.23E-02
81	GO:0008378: galactosyltransferase activity	1.34E-02
82	GO:0010329: auxin efflux transmembrane transporter activity	1.47E-02
83	GO:0015095: magnesium ion transmembrane transporter activity	1.47E-02
84	GO:0008131: primary amine oxidase activity	1.60E-02
85	GO:0004190: aspartic-type endopeptidase activity	1.74E-02
86	GO:0016491: oxidoreductase activity	1.74E-02
87	GO:0005516: calmodulin binding	1.77E-02
88	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.88E-02
89	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.88E-02
90	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.88E-02
91	GO:0003714: transcription corepressor activity	2.02E-02
92	GO:0008324: cation transmembrane transporter activity	2.17E-02
93	GO:0045330: aspartyl esterase activity	2.28E-02
94	GO:0004176: ATP-dependent peptidase activity	2.32E-02
95	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.32E-02
96	GO:0016887: ATPase activity	2.32E-02
97	GO:0030570: pectate lyase activity	2.64E-02
98	GO:0030599: pectinesterase activity	2.76E-02
99	GO:0005102: receptor binding	2.96E-02
100	GO:0003713: transcription coactivator activity	3.30E-02
101	GO:0005355: glucose transmembrane transporter activity	3.48E-02
102	GO:0016758: transferase activity, transferring hexosyl groups	3.57E-02
103	GO:0019901: protein kinase binding	3.66E-02
104	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.76E-02
105	GO:0016829: lyase activity	3.96E-02
106	GO:0004252: serine-type endopeptidase activity	4.06E-02
107	GO:0051015: actin filament binding	4.21E-02
108	GO:0003924: GTPase activity	4.26E-02
109	GO:0008237: metallopeptidase activity	4.59E-02
110	GO:0016597: amino acid binding	4.78E-02
111	GO:0016413: O-acetyltransferase activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0009507: chloroplast	1.40E-11
3	GO:0009570: chloroplast stroma	3.44E-09
4	GO:0031977: thylakoid lumen	2.35E-06
5	GO:0009543: chloroplast thylakoid lumen	3.25E-06
6	GO:0009941: chloroplast envelope	4.51E-06
7	GO:0005886: plasma membrane	9.75E-06
8	GO:0009579: thylakoid	1.20E-05
9	GO:0009534: chloroplast thylakoid	1.25E-05
10	GO:0010007: magnesium chelatase complex	2.24E-05
11	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.78E-04
12	GO:0009505: plant-type cell wall	6.35E-04
13	GO:0031969: chloroplast membrane	1.61E-03
14	GO:0032432: actin filament bundle	1.92E-03
15	GO:0009535: chloroplast thylakoid membrane	2.84E-03
16	GO:0009536: plastid	5.33E-03
17	GO:0016324: apical plasma membrane	1.10E-02
18	GO:0005884: actin filament	1.22E-02
19	GO:0000311: plastid large ribosomal subunit	1.34E-02
20	GO:0030659: cytoplasmic vesicle membrane	1.60E-02
21	GO:0043234: protein complex	1.88E-02
22	GO:0005874: microtubule	2.52E-02
23	GO:0010287: plastoglobule	3.47E-02
24	GO:0030529: intracellular ribonucleoprotein complex	4.98E-02