co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G62360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030149: sphingolipid catabolic process	0.00E+00
2	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
3	GO:0006182: cGMP biosynthetic process	0.00E+00
4	GO:0072722: response to amitrole	0.00E+00
5	GO:0002191: cap-dependent translational initiation	0.00E+00
6	GO:0042430: indole-containing compound metabolic process	0.00E+00
7	GO:0002376: immune system process	0.00E+00
8	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
9	GO:0006457: protein folding	5.16E-11
10	GO:0034976: response to endoplasmic reticulum stress	8.24E-09
11	GO:0010150: leaf senescence	2.55E-07
12	GO:0046686: response to cadmium ion	9.89E-07
13	GO:0042742: defense response to bacterium	1.12E-06
14	GO:0006099: tricarboxylic acid cycle	1.91E-06
15	GO:0006102: isocitrate metabolic process	2.27E-06
16	GO:0030968: endoplasmic reticulum unfolded protein response	3.33E-06
17	GO:0009617: response to bacterium	7.85E-06
18	GO:0009697: salicylic acid biosynthetic process	4.05E-05
19	GO:0045454: cell redox homeostasis	4.69E-05
20	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	8.36E-05
21	GO:0010120: camalexin biosynthetic process	1.78E-04
22	GO:0042964: thioredoxin reduction	1.82E-04
23	GO:0046244: salicylic acid catabolic process	1.82E-04
24	GO:0044376: RNA polymerase II complex import to nucleus	1.82E-04
25	GO:0019276: UDP-N-acetylgalactosamine metabolic process	1.82E-04
26	GO:0051938: L-glutamate import	1.82E-04
27	GO:0006047: UDP-N-acetylglucosamine metabolic process	1.82E-04
28	GO:1990641: response to iron ion starvation	1.82E-04
29	GO:1990022: RNA polymerase III complex localization to nucleus	1.82E-04
30	GO:0009553: embryo sac development	1.93E-04
31	GO:0009682: induced systemic resistance	3.54E-04
32	GO:0030003: cellular cation homeostasis	4.10E-04
33	GO:0019752: carboxylic acid metabolic process	4.10E-04
34	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	4.10E-04
35	GO:0043091: L-arginine import	4.10E-04
36	GO:0031204: posttranslational protein targeting to membrane, translocation	4.10E-04
37	GO:0044419: interspecies interaction between organisms	4.10E-04
38	GO:0006101: citrate metabolic process	4.10E-04
39	GO:0015031: protein transport	5.47E-04
40	GO:0006468: protein phosphorylation	5.89E-04
41	GO:0055114: oxidation-reduction process	6.48E-04
42	GO:0009062: fatty acid catabolic process	6.69E-04
43	GO:0006011: UDP-glucose metabolic process	6.69E-04
44	GO:0010272: response to silver ion	6.69E-04
45	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	6.69E-04
46	GO:0055074: calcium ion homeostasis	6.69E-04
47	GO:0016998: cell wall macromolecule catabolic process	8.65E-04
48	GO:0031348: negative regulation of defense response	9.43E-04
49	GO:0002239: response to oomycetes	9.55E-04
50	GO:0072334: UDP-galactose transmembrane transport	9.55E-04
51	GO:0033014: tetrapyrrole biosynthetic process	9.55E-04
52	GO:0009306: protein secretion	1.11E-03
53	GO:0006979: response to oxidative stress	1.25E-03
54	GO:0006097: glyoxylate cycle	1.61E-03
55	GO:0045116: protein neddylation	1.61E-03
56	GO:0018344: protein geranylgeranylation	1.61E-03
57	GO:0006465: signal peptide processing	1.61E-03
58	GO:0034052: positive regulation of plant-type hypersensitive response	1.61E-03
59	GO:0000304: response to singlet oxygen	1.61E-03
60	GO:0007264: small GTPase mediated signal transduction	1.82E-03
61	GO:0006561: proline biosynthetic process	1.98E-03
62	GO:0001731: formation of translation preinitiation complex	1.98E-03
63	GO:0010256: endomembrane system organization	1.98E-03
64	GO:0009751: response to salicylic acid	2.32E-03
65	GO:0009408: response to heat	2.37E-03
66	GO:0042372: phylloquinone biosynthetic process	2.38E-03
67	GO:0009615: response to virus	2.46E-03
68	GO:0009627: systemic acquired resistance	2.74E-03
69	GO:0042773: ATP synthesis coupled electron transport	2.80E-03
70	GO:1900056: negative regulation of leaf senescence	2.80E-03
71	GO:0009817: defense response to fungus, incompatible interaction	3.20E-03
72	GO:0006875: cellular metal ion homeostasis	3.24E-03
73	GO:0009850: auxin metabolic process	3.24E-03
74	GO:0006605: protein targeting	3.24E-03
75	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.24E-03
76	GO:0009819: drought recovery	3.24E-03
77	GO:0030091: protein repair	3.24E-03
78	GO:0006499: N-terminal protein myristoylation	3.53E-03
79	GO:0009699: phenylpropanoid biosynthetic process	3.71E-03
80	GO:0019430: removal of superoxide radicals	3.71E-03
81	GO:0006783: heme biosynthetic process	4.20E-03
82	GO:0010112: regulation of systemic acquired resistance	4.20E-03
83	GO:0015780: nucleotide-sugar transport	4.20E-03
84	GO:0046685: response to arsenic-containing substance	4.20E-03
85	GO:0010205: photoinhibition	4.71E-03
86	GO:0043067: regulation of programmed cell death	4.71E-03
87	GO:0090332: stomatal closure	4.71E-03
88	GO:0006952: defense response	4.99E-03
89	GO:0006032: chitin catabolic process	5.24E-03
90	GO:0009555: pollen development	5.66E-03
91	GO:0000272: polysaccharide catabolic process	5.79E-03
92	GO:0006816: calcium ion transport	5.79E-03
93	GO:0006790: sulfur compound metabolic process	6.35E-03
94	GO:0002213: defense response to insect	6.35E-03
95	GO:0009718: anthocyanin-containing compound biosynthetic process	6.94E-03
96	GO:0010075: regulation of meristem growth	6.94E-03
97	GO:0006446: regulation of translational initiation	7.55E-03
98	GO:0009934: regulation of meristem structural organization	7.55E-03
99	GO:0002237: response to molecule of bacterial origin	7.55E-03
100	GO:0046854: phosphatidylinositol phosphorylation	8.18E-03
101	GO:0048316: seed development	8.57E-03
102	GO:0006886: intracellular protein transport	8.86E-03
103	GO:0009620: response to fungus	9.13E-03
104	GO:0010187: negative regulation of seed germination	9.48E-03
105	GO:2000377: regulation of reactive oxygen species metabolic process	9.48E-03
106	GO:0005992: trehalose biosynthetic process	9.48E-03
107	GO:0006874: cellular calcium ion homeostasis	1.02E-02
108	GO:0003333: amino acid transmembrane transport	1.09E-02
109	GO:0098542: defense response to other organism	1.09E-02
110	GO:0030433: ubiquitin-dependent ERAD pathway	1.16E-02
111	GO:0019748: secondary metabolic process	1.16E-02
112	GO:0007131: reciprocal meiotic recombination	1.16E-02
113	GO:0010227: floral organ abscission	1.23E-02
114	GO:0009651: response to salt stress	1.32E-02
115	GO:0008033: tRNA processing	1.46E-02
116	GO:0010118: stomatal movement	1.46E-02
117	GO:0009790: embryo development	1.47E-02
118	GO:0010197: polar nucleus fusion	1.54E-02
119	GO:0048868: pollen tube development	1.54E-02
120	GO:0006520: cellular amino acid metabolic process	1.54E-02
121	GO:0006413: translational initiation	1.62E-02
122	GO:0000302: response to reactive oxygen species	1.79E-02
123	GO:0006635: fatty acid beta-oxidation	1.79E-02
124	GO:0002229: defense response to oomycetes	1.79E-02
125	GO:0030163: protein catabolic process	1.96E-02
126	GO:0007166: cell surface receptor signaling pathway	1.99E-02
127	GO:0009567: double fertilization forming a zygote and endosperm	2.05E-02
128	GO:0009735: response to cytokinin	2.05E-02
129	GO:0010252: auxin homeostasis	2.05E-02
130	GO:0009409: response to cold	2.58E-02
131	GO:0015995: chlorophyll biosynthetic process	2.61E-02
132	GO:0016311: dephosphorylation	2.71E-02
133	GO:0016049: cell growth	2.71E-02
134	GO:0008219: cell death	2.81E-02
135	GO:0050832: defense response to fungus	2.98E-02
136	GO:0009407: toxin catabolic process	3.01E-02
137	GO:0010043: response to zinc ion	3.11E-02
138	GO:0007568: aging	3.11E-02
139	GO:0045087: innate immune response	3.32E-02
140	GO:0009853: photorespiration	3.32E-02
141	GO:0044550: secondary metabolite biosynthetic process	3.62E-02
142	GO:0042542: response to hydrogen peroxide	3.87E-02
143	GO:0009644: response to high light intensity	4.21E-02
144	GO:0009636: response to toxic substance	4.32E-02
145	GO:0009965: leaf morphogenesis	4.32E-02
146	GO:0006855: drug transmembrane transport	4.44E-02
147	GO:0031347: regulation of defense response	4.56E-02
148	GO:0009846: pollen germination	4.68E-02
149	GO:0042538: hyperosmotic salinity response	4.68E-02
150	GO:0006486: protein glycosylation	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
2	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
3	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
4	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
5	GO:0051670: inulinase activity	0.00E+00
6	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
7	GO:0098808: mRNA cap binding	0.00E+00
8	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
9	GO:0051082: unfolded protein binding	9.00E-07
10	GO:0003756: protein disulfide isomerase activity	2.35E-06
11	GO:0005093: Rab GDP-dissociation inhibitor activity	5.87E-06
12	GO:0005460: UDP-glucose transmembrane transporter activity	1.35E-05
13	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.35E-05
14	GO:0005459: UDP-galactose transmembrane transporter activity	4.05E-05
15	GO:0005524: ATP binding	8.42E-05
16	GO:0004674: protein serine/threonine kinase activity	1.35E-04
17	GO:0016301: kinase activity	1.46E-04
18	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	1.82E-04
19	GO:0048037: cofactor binding	1.82E-04
20	GO:0008909: isochorismate synthase activity	1.82E-04
21	GO:0031219: levanase activity	1.82E-04
22	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.82E-04
23	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	1.82E-04
24	GO:0008809: carnitine racemase activity	1.82E-04
25	GO:0051669: fructan beta-fructosidase activity	1.82E-04
26	GO:0004325: ferrochelatase activity	1.82E-04
27	GO:0004776: succinate-CoA ligase (GDP-forming) activity	4.10E-04
28	GO:0019781: NEDD8 activating enzyme activity	4.10E-04
29	GO:0003994: aconitate hydratase activity	4.10E-04
30	GO:0004775: succinate-CoA ligase (ADP-forming) activity	4.10E-04
31	GO:0051539: 4 iron, 4 sulfur cluster binding	5.66E-04
32	GO:0004383: guanylate cyclase activity	6.69E-04
33	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	6.69E-04
34	GO:0000030: mannosyltransferase activity	6.69E-04
35	GO:0004148: dihydrolipoyl dehydrogenase activity	6.69E-04
36	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.69E-04
37	GO:0010178: IAA-amino acid conjugate hydrolase activity	9.55E-04
38	GO:0004165: dodecenoyl-CoA delta-isomerase activity	9.55E-04
39	GO:0015189: L-lysine transmembrane transporter activity	9.55E-04
40	GO:0015181: arginine transmembrane transporter activity	9.55E-04
41	GO:0005509: calcium ion binding	1.05E-03
42	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.27E-03
43	GO:0005313: L-glutamate transmembrane transporter activity	1.27E-03
44	GO:0010181: FMN binding	1.49E-03
45	GO:0002020: protease binding	1.61E-03
46	GO:0008641: small protein activating enzyme activity	1.61E-03
47	GO:0017137: Rab GTPase binding	1.61E-03
48	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.98E-03
49	GO:0004656: procollagen-proline 4-dioxygenase activity	2.38E-03
50	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.38E-03
51	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.38E-03
52	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.38E-03
53	GO:0005261: cation channel activity	2.38E-03
54	GO:0008320: protein transmembrane transporter activity	2.80E-03
55	GO:0016831: carboxy-lyase activity	2.80E-03
56	GO:0030247: polysaccharide binding	2.89E-03
57	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.20E-03
58	GO:0005096: GTPase activator activity	3.36E-03
59	GO:0008135: translation factor activity, RNA binding	3.71E-03
60	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.05E-03
61	GO:0030955: potassium ion binding	4.71E-03
62	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.71E-03
63	GO:0004743: pyruvate kinase activity	4.71E-03
64	GO:0015174: basic amino acid transmembrane transporter activity	4.71E-03
65	GO:0004568: chitinase activity	5.24E-03
66	GO:0000166: nucleotide binding	5.66E-03
67	GO:0008559: xenobiotic-transporting ATPase activity	5.79E-03
68	GO:0004129: cytochrome-c oxidase activity	5.79E-03
69	GO:0008233: peptidase activity	6.63E-03
70	GO:0004022: alcohol dehydrogenase (NAD) activity	6.94E-03
71	GO:0031072: heat shock protein binding	6.94E-03
72	GO:0005262: calcium channel activity	6.94E-03
73	GO:0016491: oxidoreductase activity	7.42E-03
74	GO:0005217: intracellular ligand-gated ion channel activity	8.18E-03
75	GO:0004970: ionotropic glutamate receptor activity	8.18E-03
76	GO:0008061: chitin binding	8.18E-03
77	GO:0003712: transcription cofactor activity	8.18E-03
78	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	9.40E-03
79	GO:0051536: iron-sulfur cluster binding	9.48E-03
80	GO:0031418: L-ascorbic acid binding	9.48E-03
81	GO:0003954: NADH dehydrogenase activity	9.48E-03
82	GO:0004298: threonine-type endopeptidase activity	1.09E-02
83	GO:0016779: nucleotidyltransferase activity	1.16E-02
84	GO:0008565: protein transporter activity	1.50E-02
85	GO:0005506: iron ion binding	1.61E-02
86	GO:0004791: thioredoxin-disulfide reductase activity	1.62E-02
87	GO:0016853: isomerase activity	1.62E-02
88	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.79E-02
89	GO:0003743: translation initiation factor activity	2.03E-02
90	GO:0008237: metallopeptidase activity	2.14E-02
91	GO:0051213: dioxygenase activity	2.32E-02
92	GO:0004683: calmodulin-dependent protein kinase activity	2.61E-02
93	GO:0000287: magnesium ion binding	2.64E-02
94	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.71E-02
95	GO:0015238: drug transmembrane transporter activity	2.91E-02
96	GO:0043531: ADP binding	2.95E-02
97	GO:0050660: flavin adenine dinucleotide binding	3.11E-02
98	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.11E-02
99	GO:0050897: cobalt ion binding	3.11E-02
100	GO:0020037: heme binding	3.23E-02
101	GO:0003746: translation elongation factor activity	3.32E-02
102	GO:0030246: carbohydrate binding	3.33E-02
103	GO:0005507: copper ion binding	3.57E-02
104	GO:0019825: oxygen binding	3.57E-02
105	GO:0004364: glutathione transferase activity	3.87E-02
106	GO:0051537: 2 iron, 2 sulfur cluster binding	4.21E-02
107	GO:0051287: NAD binding	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0005784: Sec61 translocon complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
4	GO:0005788: endoplasmic reticulum lumen	4.74E-14
5	GO:0005783: endoplasmic reticulum	1.19E-12
6	GO:0005774: vacuolar membrane	6.61E-06
7	GO:0005829: cytosol	1.70E-04
8	GO:0045252: oxoglutarate dehydrogenase complex	1.82E-04
9	GO:0005789: endoplasmic reticulum membrane	2.16E-04
10	GO:0005886: plasma membrane	3.74E-04
11	GO:0030134: ER to Golgi transport vesicle	4.10E-04
12	GO:0030176: integral component of endoplasmic reticulum membrane	5.83E-04
13	GO:0048046: apoplast	6.05E-04
14	GO:0005968: Rab-protein geranylgeranyltransferase complex	9.55E-04
15	GO:0016021: integral component of membrane	1.12E-03
16	GO:0005746: mitochondrial respiratory chain	1.61E-03
17	GO:0016592: mediator complex	1.82E-03
18	GO:0016282: eukaryotic 43S preinitiation complex	1.98E-03
19	GO:0005801: cis-Golgi network	2.38E-03
20	GO:0033290: eukaryotic 48S preinitiation complex	2.38E-03
21	GO:0030173: integral component of Golgi membrane	2.38E-03
22	GO:0000326: protein storage vacuole	3.71E-03
23	GO:0019773: proteasome core complex, alpha-subunit complex	3.71E-03
24	GO:0031090: organelle membrane	4.20E-03
25	GO:0016020: membrane	5.06E-03
26	GO:0005747: mitochondrial respiratory chain complex I	8.57E-03
27	GO:0005834: heterotrimeric G-protein complex	8.84E-03
28	GO:0045271: respiratory chain complex I	1.02E-02
29	GO:0005839: proteasome core complex	1.09E-02
30	GO:0005623: cell	1.29E-02
31	GO:0005759: mitochondrial matrix	1.58E-02
32	GO:0009507: chloroplast	1.79E-02
33	GO:0005618: cell wall	1.82E-02
34	GO:0009505: plant-type cell wall	2.30E-02
35	GO:0000325: plant-type vacuole	3.11E-02
36	GO:0005773: vacuole	3.14E-02
37	GO:0031969: chloroplast membrane	3.33E-02
38	GO:0005737: cytoplasm	3.72E-02
39	GO:0031966: mitochondrial membrane	4.68E-02
40	GO:0005739: mitochondrion	4.83E-02
41	GO:0000502: proteasome complex	4.92E-02