Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G61960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
2GO:0032780: negative regulation of ATPase activity0.00E+00
3GO:0000303: response to superoxide3.50E-05
4GO:0080173: male-female gamete recognition during double fertilization3.50E-05
5GO:0071395: cellular response to jasmonic acid stimulus8.78E-05
6GO:0019521: D-gluconate metabolic process8.78E-05
7GO:0043617: cellular response to sucrose starvation1.52E-04
8GO:0001676: long-chain fatty acid metabolic process2.25E-04
9GO:0045017: glycerolipid biosynthetic process2.25E-04
10GO:0006809: nitric oxide biosynthetic process2.25E-04
11GO:0006464: cellular protein modification process2.46E-04
12GO:0006090: pyruvate metabolic process3.89E-04
13GO:0098719: sodium ion import across plasma membrane3.89E-04
14GO:0046283: anthocyanin-containing compound metabolic process3.89E-04
15GO:0048280: vesicle fusion with Golgi apparatus5.70E-04
16GO:0010189: vitamin E biosynthetic process5.70E-04
17GO:0006979: response to oxidative stress5.82E-04
18GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway6.66E-04
19GO:0071446: cellular response to salicylic acid stimulus6.66E-04
20GO:0006102: isocitrate metabolic process7.68E-04
21GO:0006098: pentose-phosphate shunt9.78E-04
22GO:0051453: regulation of intracellular pH1.09E-03
23GO:0006896: Golgi to vacuole transport1.20E-03
24GO:0012501: programmed cell death1.44E-03
25GO:0010102: lateral root morphogenesis1.57E-03
26GO:0055046: microgametogenesis1.57E-03
27GO:0009790: embryo development1.65E-03
28GO:0006511: ubiquitin-dependent protein catabolic process2.06E-03
29GO:2000377: regulation of reactive oxygen species metabolic process2.12E-03
30GO:0031408: oxylipin biosynthetic process2.41E-03
31GO:0009561: megagametogenesis2.87E-03
32GO:0042147: retrograde transport, endosome to Golgi3.03E-03
33GO:0006814: sodium ion transport3.53E-03
34GO:0009646: response to absence of light3.53E-03
35GO:0006623: protein targeting to vacuole3.70E-03
36GO:0010193: response to ozone3.88E-03
37GO:0006891: intra-Golgi vesicle-mediated transport3.88E-03
38GO:0016032: viral process4.06E-03
39GO:0009630: gravitropism4.06E-03
40GO:1901657: glycosyl compound metabolic process4.24E-03
41GO:0006914: autophagy4.42E-03
42GO:0045892: negative regulation of transcription, DNA-templated4.48E-03
43GO:0071805: potassium ion transmembrane transport4.60E-03
44GO:0009816: defense response to bacterium, incompatible interaction5.18E-03
45GO:0006888: ER to Golgi vesicle-mediated transport5.58E-03
46GO:0006950: response to stress5.58E-03
47GO:0009873: ethylene-activated signaling pathway7.01E-03
48GO:0009867: jasmonic acid mediated signaling pathway7.05E-03
49GO:0006099: tricarboxylic acid cycle7.27E-03
50GO:0006631: fatty acid metabolic process7.95E-03
51GO:0009744: response to sucrose8.41E-03
52GO:0051707: response to other organism8.41E-03
53GO:0000209: protein polyubiquitination8.65E-03
54GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process9.61E-03
55GO:0051603: proteolysis involved in cellular protein catabolic process1.06E-02
56GO:0016310: phosphorylation1.07E-02
57GO:0006417: regulation of translation1.11E-02
58GO:0055114: oxidation-reduction process1.23E-02
59GO:0051726: regulation of cell cycle1.38E-02
60GO:0000398: mRNA splicing, via spliceosome1.47E-02
61GO:0016036: cellular response to phosphate starvation1.86E-02
62GO:0006413: translational initiation1.86E-02
63GO:0010150: leaf senescence1.96E-02
64GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.12E-02
65GO:0006470: protein dephosphorylation2.15E-02
66GO:0009617: response to bacterium2.22E-02
67GO:0006970: response to osmotic stress2.82E-02
68GO:0009723: response to ethylene2.96E-02
69GO:0010200: response to chitin3.19E-02
70GO:0015979: photosynthesis3.42E-02
71GO:0045454: cell redox homeostasis3.54E-02
72GO:0032259: methylation3.98E-02
73GO:0016042: lipid catabolic process4.03E-02
74GO:0006629: lipid metabolic process4.11E-02
75GO:0006468: protein phosphorylation4.49E-02
RankGO TermAdjusted P value
1GO:0050242: pyruvate, phosphate dikinase activity0.00E+00
2GO:0042030: ATPase inhibitor activity0.00E+00
3GO:0050342: tocopherol O-methyltransferase activity0.00E+00
4GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.50E-05
5GO:0004450: isocitrate dehydrogenase (NADP+) activity8.78E-05
6GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity1.52E-04
7GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen3.89E-04
8GO:0031386: protein tag3.89E-04
9GO:0047714: galactolipase activity4.78E-04
10GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.70E-04
11GO:0004144: diacylglycerol O-acyltransferase activity5.70E-04
12GO:0008113: peptide-methionine (S)-S-oxide reductase activity5.70E-04
13GO:0003950: NAD+ ADP-ribosyltransferase activity5.70E-04
14GO:0004143: diacylglycerol kinase activity6.66E-04
15GO:0004869: cysteine-type endopeptidase inhibitor activity7.68E-04
16GO:0003951: NAD+ kinase activity8.71E-04
17GO:0008970: phosphatidylcholine 1-acylhydrolase activity8.71E-04
18GO:0045309: protein phosphorylated amino acid binding1.09E-03
19GO:0008794: arsenate reductase (glutaredoxin) activity1.32E-03
20GO:0019904: protein domain specific binding1.32E-03
21GO:0015386: potassium:proton antiporter activity1.32E-03
22GO:0004872: receptor activity3.70E-03
23GO:0015385: sodium:proton antiporter activity4.24E-03
24GO:0051213: dioxygenase activity4.99E-03
25GO:0004842: ubiquitin-protein transferase activity5.15E-03
26GO:0102483: scopolin beta-glucosidase activity5.58E-03
27GO:0004806: triglyceride lipase activity5.58E-03
28GO:0009055: electron carrier activity5.83E-03
29GO:0008422: beta-glucosidase activity7.49E-03
30GO:0000149: SNARE binding7.49E-03
31GO:0005484: SNAP receptor activity8.41E-03
32GO:0051287: NAD binding9.61E-03
33GO:0015035: protein disulfide oxidoreductase activity1.36E-02
34GO:0003743: translation initiation factor activity2.19E-02
35GO:0000287: magnesium ion binding2.64E-02
36GO:0004601: peroxidase activity2.67E-02
37GO:0004672: protein kinase activity2.88E-02
38GO:0050660: flavin adenine dinucleotide binding2.96E-02
39GO:0061630: ubiquitin protein ligase activity3.23E-02
40GO:0005524: ATP binding3.38E-02
41GO:0004871: signal transducer activity3.66E-02
42GO:0004722: protein serine/threonine phosphatase activity3.78E-02
43GO:0016787: hydrolase activity4.19E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0030140: trans-Golgi network transport vesicle4.78E-04
3GO:0016363: nuclear matrix5.70E-04
4GO:0012507: ER to Golgi transport vesicle membrane7.68E-04
5GO:0016602: CCAAT-binding factor complex1.57E-03
6GO:0005770: late endosome3.36E-03
7GO:0032580: Golgi cisterna membrane4.42E-03
8GO:0005829: cytosol6.05E-03
9GO:0000325: plant-type vacuole6.61E-03
10GO:0031902: late endosome membrane7.95E-03
11GO:0031201: SNARE complex7.95E-03
12GO:0005635: nuclear envelope1.09E-02
13GO:0005777: peroxisome1.11E-02
14GO:0010008: endosome membrane1.19E-02
15GO:0005834: heterotrimeric G-protein complex1.22E-02
16GO:0005759: mitochondrial matrix1.83E-02
17GO:0005789: endoplasmic reticulum membrane2.99E-02
18GO:0009570: chloroplast stroma3.67E-02
19GO:0005783: endoplasmic reticulum3.97E-02
20GO:0043231: intracellular membrane-bounded organelle4.41E-02
21GO:0005737: cytoplasm4.49E-02
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Gene type



Gene DE type